Wall clock time and date at job start Sun Mar 29 2020 22:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37095 * 120.00394 * 2 1 4 4 H 1.08004 * 120.00143 * 146.80699 * 3 2 1 5 5 C 1.38948 * 119.99897 * 326.80166 * 3 2 1 6 6 N 1.31411 * 119.99842 * 163.05943 * 5 3 2 7 7 Si 1.86800 * 120.00075 * 343.06412 * 5 3 2 8 8 H 1.48504 * 109.47319 * 86.52303 * 7 5 3 9 9 H 1.48500 * 109.47060 * 206.52255 * 7 5 3 10 10 H 1.48500 * 109.47031 * 326.52265 * 7 5 3 11 11 C 1.34781 * 119.99578 * 180.02562 * 2 1 3 12 12 O 1.21295 * 119.99576 * 184.41796 * 11 2 1 13 13 C 1.50698 * 120.00179 * 4.41706 * 11 2 1 14 14 C 1.52999 * 109.47206 * 278.23516 * 13 11 2 15 15 O 1.42898 * 109.47026 * 38.24030 * 13 11 2 16 16 C 1.53006 * 109.46829 * 158.23915 * 13 11 2 17 17 C 1.53002 * 117.51910 * 111.28683 * 16 13 11 18 18 C 1.53002 * 60.00160 * 107.47396 * 17 16 13 19 19 H 1.08997 * 109.47036 * 235.38939 * 1 2 3 20 20 H 1.09005 * 109.46947 * 355.38699 * 1 2 3 21 21 H 1.09002 * 109.46855 * 115.38477 * 1 2 3 22 22 H 0.96997 * 119.99678 * 180.02562 * 6 5 3 23 23 H 1.09001 * 109.47294 * 300.00644 * 14 13 11 24 24 H 1.09004 * 109.46884 * 59.99700 * 14 13 11 25 25 H 1.09003 * 109.47201 * 179.97438 * 14 13 11 26 26 H 0.96693 * 114.00384 * 59.99954 * 15 13 11 27 27 H 1.08999 * 115.54769 * 325.57795 * 16 13 11 28 28 H 1.08996 * 117.49798 * 214.96892 * 17 16 13 29 29 H 1.09002 * 117.49531 * 359.97438 * 17 16 13 30 30 H 1.08996 * 117.50225 * 252.50757 * 18 17 16 31 31 H 1.09004 * 117.49367 * 107.48717 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.0984 1.2635 0.5121 5 6 1.6260 2.2924 -0.6589 6 7 2.0866 3.4945 -0.3949 7 14 0.2659 2.0694 -1.9198 8 1 -1.0510 2.0723 -1.2333 9 1 0.3144 3.1819 -2.9022 10 1 0.4529 0.7766 -2.6262 11 6 2.1388 -1.1673 -0.0005 12 8 3.3491 -1.1689 0.0804 13 6 1.3886 -2.4704 -0.1016 14 6 0.8608 -2.8635 1.2796 15 8 0.2921 -2.3198 -1.0055 16 6 2.3290 -3.5614 -0.6177 17 6 2.7233 -4.6736 0.3562 18 6 1.7521 -4.9682 -0.7888 19 1 -0.3633 -0.5837 0.8458 20 1 -0.3633 1.0244 0.0827 21 1 -0.3633 -0.4406 -0.9285 22 1 1.7201 4.2660 -0.8546 23 1 1.6973 -2.9782 1.9691 24 1 0.1910 -2.0861 1.6474 25 1 0.3178 -3.8058 1.2064 26 1 0.5532 -2.0706 -1.9025 27 1 3.0787 -3.2338 -1.3380 28 1 3.7325 -5.0777 0.2767 29 1 2.3132 -4.6279 1.3650 30 1 0.7030 -5.1165 -0.5333 31 1 2.1225 -5.5662 -1.6216 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335598820.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:33 Heat of formation + Delta-G solvation = -37.528488 kcal Electronic energy + Delta-G solvation = -15161.282736 eV Core-core repulsion = 12637.790697 eV Total energy + Delta-G solvation = -2523.492040 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.80838 -37.22934 -35.40477 -34.56122 -31.94881 -30.20827 -26.39852 -25.57551 -24.16932 -22.18627 -20.48003 -18.94428 -17.10530 -16.90761 -16.13409 -15.51030 -14.90257 -14.33022 -14.05195 -13.50938 -13.11867 -12.62490 -12.50914 -12.22255 -12.03491 -11.94518 -11.72703 -11.10422 -10.91146 -10.61944 -10.36657 -10.17987 -10.08263 -9.91007 -9.78968 -9.08865 -8.30264 -7.72305 -6.37487 -3.95033 3.05200 3.20831 3.24240 3.58697 3.90593 4.14605 4.37631 4.59848 4.89966 4.98257 5.15734 5.21062 5.31925 5.55396 5.75831 5.77940 5.93212 5.99815 6.06148 6.11254 6.23193 6.27237 6.38433 6.47732 6.57677 7.50841 7.80565 8.26585 8.52440 8.94972 9.33198 9.75809 10.74654 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.048597 B = 0.010635 C = 0.009821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.032557 B = 2632.154512 C = 2850.251835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.460 5.460 3 C -0.317 4.317 4 H 0.107 0.893 5 C 0.053 3.947 6 N -0.870 5.870 7 Si 0.892 3.108 8 H -0.274 1.274 9 H -0.291 1.291 10 H -0.267 1.267 11 C 0.437 3.563 12 O -0.562 6.562 13 C 0.150 3.850 14 C -0.139 4.139 15 O -0.549 6.549 16 C -0.159 4.159 17 C -0.173 4.173 18 C -0.172 4.172 19 H 0.054 0.946 20 H 0.071 0.929 21 H 0.066 0.934 22 H 0.274 0.726 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.378 0.622 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.693 -12.531 -0.916 13.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.181 5.181 3 C -0.444 4.444 4 H 0.125 0.875 5 C -0.152 4.152 6 N -0.507 5.507 7 Si 0.720 3.280 8 H -0.201 1.201 9 H -0.219 1.219 10 H -0.192 1.192 11 C 0.224 3.776 12 O -0.444 6.444 13 C 0.107 3.893 14 C -0.196 4.196 15 O -0.356 6.356 16 C -0.178 4.178 17 C -0.209 4.209 18 C -0.209 4.209 19 H 0.072 0.928 20 H 0.089 0.911 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.094 0.906 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.226 0.774 27 H 0.128 0.872 28 H 0.110 0.890 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.435 -12.449 -0.370 13.589 hybrid contribution -0.398 0.319 -1.192 1.297 sum -5.833 -12.129 -1.562 13.550 Atomic orbital electron populations 1.22355 0.82688 1.02076 1.01712 1.43704 1.04431 1.05552 1.64412 1.19196 1.07178 0.84849 1.33196 0.87512 1.25381 0.97994 0.94799 0.97006 1.69715 1.42722 0.97994 1.40240 0.86874 0.81415 0.78059 0.81659 1.20056 1.21852 1.19160 1.20697 0.88105 0.85247 0.83517 1.90557 1.13932 1.86742 1.53150 1.20778 0.85569 0.92084 0.90905 1.21883 1.01790 1.02056 0.93911 1.86507 1.33163 1.91980 1.23913 1.22626 1.01840 0.89412 1.03895 1.23034 0.99895 1.02384 0.95637 1.22889 0.99194 0.98094 1.00741 0.92763 0.91102 0.91603 0.91569 0.90579 0.91297 0.91575 0.77396 0.87220 0.88989 0.88235 0.88617 0.89141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.14 6.85 59.85 0.41 1.55 16 2 N -0.46 -11.37 2.69 -122.19 -0.33 -11.70 16 3 C -0.32 -9.16 9.53 -14.94 -0.14 -9.31 16 4 H 0.11 3.49 7.78 -52.48 -0.41 3.08 16 5 C 0.05 1.49 5.24 -17.47 -0.09 1.40 16 6 N -0.87 -25.54 13.96 55.50 0.77 -24.76 16 7 Si 0.89 20.73 24.37 -169.99 -4.14 16.59 16 8 H -0.27 -5.93 6.45 56.52 0.36 -5.57 16 9 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.27 -5.98 6.96 56.52 0.39 -5.59 16 11 C 0.44 10.29 6.54 -10.98 -0.07 10.22 16 12 O -0.56 -15.33 15.86 5.54 0.09 -15.24 16 13 C 0.15 2.68 0.78 -91.77 -0.07 2.61 16 14 C -0.14 -2.16 7.33 37.16 0.27 -1.89 16 15 O -0.55 -8.99 9.61 -35.23 -0.34 -9.33 16 16 C -0.16 -2.56 4.84 -90.61 -0.44 -3.00 16 17 C -0.17 -2.35 9.57 -26.73 -0.26 -2.60 16 18 C -0.17 -2.17 9.80 -26.73 -0.26 -2.43 16 19 H 0.05 1.00 5.86 -51.93 -0.30 0.69 16 20 H 0.07 1.54 4.63 -51.93 -0.24 1.30 16 21 H 0.07 1.26 5.12 -51.93 -0.27 0.99 16 22 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.08 1.17 6.97 -51.93 -0.36 0.81 16 24 H 0.07 1.08 5.97 -51.93 -0.31 0.77 16 25 H 0.07 0.87 7.07 -51.93 -0.37 0.50 16 26 H 0.38 5.60 8.91 45.56 0.41 6.01 16 27 H 0.11 1.94 7.89 -51.93 -0.41 1.53 16 28 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 29 H 0.10 1.27 5.85 -51.93 -0.30 0.97 16 30 H 0.10 1.16 7.60 -51.93 -0.39 0.76 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 245.72 15.07 3.70 3.70 Total: -1.00 -32.05 245.72 -3.88 -35.93 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -2.99 Total: 8.26 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -0.65 Total: -3.45 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: 0.45 Total: -36.46 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.25 Total: -24.57 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.14 Total: 16.59 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -32.05 -3.88 -35.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335598820.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.595 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds