Wall clock time and date at job start Sun Mar 29 2020 22:08:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.37095 * 120.00394 * 2 1
4 4 H 1.08004 * 120.00143 * 146.80699 * 3 2 1
5 5 C 1.38948 * 119.99897 * 326.80166 * 3 2 1
6 6 N 1.31411 * 119.99842 * 163.05943 * 5 3 2
7 7 Si 1.86800 * 120.00075 * 343.06412 * 5 3 2
8 8 H 1.48504 * 109.47319 * 86.52303 * 7 5 3
9 9 H 1.48500 * 109.47060 * 206.52255 * 7 5 3
10 10 H 1.48500 * 109.47031 * 326.52265 * 7 5 3
11 11 C 1.34781 * 119.99578 * 180.02562 * 2 1 3
12 12 O 1.21295 * 119.99576 * 184.41796 * 11 2 1
13 13 C 1.50698 * 120.00179 * 4.41706 * 11 2 1
14 14 C 1.52999 * 109.47206 * 278.23516 * 13 11 2
15 15 O 1.42898 * 109.47026 * 38.24030 * 13 11 2
16 16 C 1.53006 * 109.46829 * 158.23915 * 13 11 2
17 17 C 1.53002 * 117.51910 * 111.28683 * 16 13 11
18 18 C 1.53002 * 60.00160 * 107.47396 * 17 16 13
19 19 H 1.08997 * 109.47036 * 235.38939 * 1 2 3
20 20 H 1.09005 * 109.46947 * 355.38699 * 1 2 3
21 21 H 1.09002 * 109.46855 * 115.38477 * 1 2 3
22 22 H 0.96997 * 119.99678 * 180.02562 * 6 5 3
23 23 H 1.09001 * 109.47294 * 300.00644 * 14 13 11
24 24 H 1.09004 * 109.46884 * 59.99700 * 14 13 11
25 25 H 1.09003 * 109.47201 * 179.97438 * 14 13 11
26 26 H 0.96693 * 114.00384 * 59.99954 * 15 13 11
27 27 H 1.08999 * 115.54769 * 325.57795 * 16 13 11
28 28 H 1.08996 * 117.49798 * 214.96892 * 17 16 13
29 29 H 1.09002 * 117.49531 * 359.97438 * 17 16 13
30 30 H 1.08996 * 117.50225 * 252.50757 * 18 17 16
31 31 H 1.09004 * 117.49367 * 107.48717 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1505 1.1872 0.0000
4 1 3.0984 1.2635 0.5121
5 6 1.6260 2.2924 -0.6589
6 7 2.0866 3.4945 -0.3949
7 14 0.2659 2.0694 -1.9198
8 1 -1.0510 2.0723 -1.2333
9 1 0.3144 3.1819 -2.9022
10 1 0.4529 0.7766 -2.6262
11 6 2.1388 -1.1673 -0.0005
12 8 3.3491 -1.1689 0.0804
13 6 1.3886 -2.4704 -0.1016
14 6 0.8608 -2.8635 1.2796
15 8 0.2921 -2.3198 -1.0055
16 6 2.3290 -3.5614 -0.6177
17 6 2.7233 -4.6736 0.3562
18 6 1.7521 -4.9682 -0.7888
19 1 -0.3633 -0.5837 0.8458
20 1 -0.3633 1.0244 0.0827
21 1 -0.3633 -0.4406 -0.9285
22 1 1.7201 4.2660 -0.8546
23 1 1.6973 -2.9782 1.9691
24 1 0.1910 -2.0861 1.6474
25 1 0.3178 -3.8058 1.2064
26 1 0.5532 -2.0706 -1.9025
27 1 3.0787 -3.2338 -1.3380
28 1 3.7325 -5.0777 0.2767
29 1 2.3132 -4.6279 1.3650
30 1 0.7030 -5.1165 -0.5333
31 1 2.1225 -5.5662 -1.6216
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000335598820.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:08:33
Heat of formation + Delta-G solvation = -62.805951 kcal
Electronic energy + Delta-G solvation = -15162.378849 eV
Core-core repulsion = 12637.790697 eV
Total energy + Delta-G solvation = -2524.588153 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 213.115 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-41.39515 -38.75360 -37.03301 -36.19082 -34.04853 -31.53226 -28.20171 -27.37983
-25.68364 -23.19355 -22.10016 -20.38747 -19.13482 -18.48963 -17.63787 -17.26953
-16.52481 -16.01095 -15.62779 -14.82221 -14.61010 -14.47743 -14.12011 -13.97736
-13.66242 -13.37050 -13.03130 -12.58683 -12.44066 -12.15512 -12.06972 -11.80100
-11.42772 -11.29560 -11.11670 -11.00973 -10.11190 -9.72309 -8.52788 -6.17680
1.23080 1.31490 1.45621 1.79457 2.17725 2.54320 2.91008 2.92550
3.32557 3.67083 3.73018 4.01239 4.09851 4.31894 4.38469 4.50196
4.67975 4.73568 4.77715 4.88429 4.96665 5.01557 5.15690 5.29506
5.32150 5.48057 5.97084 6.39258 6.63291 6.89051 7.26234 7.80381
8.64360
Molecular weight = 213.12amu
Principal moments of inertia in cm(-1)
A = 0.048597 B = 0.010635 C = 0.009821
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 576.032557 B = 2632.154512 C = 2850.251835
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.052 3.948
2 N -0.472 5.472
3 C -0.341 4.341
4 H 0.042 0.958
5 C 0.003 3.997
6 N -0.918 5.918
7 Si 0.965 3.035
8 H -0.238 1.238
9 H -0.292 1.292
10 H -0.250 1.250
11 C 0.430 3.570
12 O -0.613 6.613
13 C 0.167 3.833
14 C -0.138 4.138
15 O -0.541 6.541
16 C -0.193 4.193
17 C -0.173 4.173
18 C -0.136 4.136
19 H 0.080 0.920
20 H 0.061 0.939
21 H 0.092 0.908
22 H 0.281 0.719
23 H 0.071 0.929
24 H 0.066 0.934
25 H 0.101 0.899
26 H 0.386 0.614
27 H 0.082 0.918
28 H 0.096 0.904
29 H 0.110 0.890
30 H 0.112 0.888
31 H 0.108 0.892
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.743 -14.998 -1.904 17.464
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.089 4.089
2 N -0.193 5.193
3 C -0.469 4.469
4 H 0.060 0.940
5 C -0.198 4.198
6 N -0.556 5.556
7 Si 0.787 3.213
8 H -0.162 1.162
9 H -0.219 1.219
10 H -0.174 1.174
11 C 0.219 3.781
12 O -0.498 6.498
13 C 0.123 3.877
14 C -0.195 4.195
15 O -0.348 6.348
16 C -0.213 4.213
17 C -0.210 4.210
18 C -0.173 4.173
19 H 0.099 0.901
20 H 0.080 0.920
21 H 0.110 0.890
22 H 0.090 0.910
23 H 0.090 0.910
24 H 0.085 0.915
25 H 0.119 0.881
26 H 0.235 0.765
27 H 0.101 0.899
28 H 0.114 0.886
29 H 0.128 0.872
30 H 0.130 0.870
31 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges -8.511 -14.932 -1.345 17.240
hybrid contribution 0.680 1.091 -0.819 1.524
sum -7.831 -13.841 -2.163 16.049
Atomic orbital electron populations
1.22557 0.79833 1.02307 1.04240 1.43823 1.06133 1.04514 1.64819
1.18799 1.06124 0.87632 1.34352 0.93999 1.26305 1.01332 0.93646
0.98523 1.69849 1.45049 0.99189 1.41500 0.85728 0.78924 0.78560
0.78115 1.16237 1.21896 1.17387 1.21981 0.88003 0.87002 0.81145
1.90518 1.16646 1.87843 1.54764 1.20557 0.85655 0.88690 0.92761
1.21926 1.01898 1.03687 0.92016 1.86480 1.32265 1.91733 1.24308
1.22493 1.02571 0.90706 1.05483 1.23189 1.00918 1.00558 0.96344
1.22990 0.99745 0.94254 1.00315 0.90138 0.92027 0.89015 0.90973
0.90975 0.91469 0.88051 0.76465 0.89928 0.88561 0.87205 0.87004
0.87375
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.05 2.03 6.85 127.77 0.87 2.90 16
2 N -0.47 -23.45 2.69 -658.88 -1.77 -25.23 16
3 C -0.34 -20.69 9.53 84.04 0.80 -19.89 16
4 H 0.04 3.00 7.78 -2.91 -0.02 2.97 16
5 C 0.00 0.18 5.24 84.93 0.44 0.62 16
6 N -0.92 -55.89 13.96 21.66 0.30 -55.59 16
7 Si 0.96 41.78 24.37 68.60 1.67 43.45 16
8 H -0.24 -8.99 6.45 99.48 0.64 -8.35 16
9 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16
10 H -0.25 -10.08 6.96 99.48 0.69 -9.39 16
11 C 0.43 20.45 6.54 87.66 0.57 21.02 16
12 O -0.61 -35.11 15.86 -3.07 -0.05 -35.16 16
13 C 0.17 5.61 0.78 -11.54 -0.01 5.60 16
14 C -0.14 -3.85 7.33 71.98 0.53 -3.32 16
15 O -0.54 -15.60 9.61 -148.98 -1.43 -17.03 16
16 C -0.19 -5.89 4.84 -10.79 -0.05 -5.94 16
17 C -0.17 -4.25 9.57 30.60 0.29 -3.95 16
18 C -0.14 -2.87 9.80 30.60 0.30 -2.57 16
19 H 0.08 2.69 5.86 -2.39 -0.01 2.68 16
20 H 0.06 2.50 4.63 -2.38 -0.01 2.49 16
21 H 0.09 3.09 5.12 -2.39 -0.01 3.08 16
22 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16
23 H 0.07 2.07 6.97 -2.39 -0.02 2.05 16
24 H 0.07 1.89 5.97 -2.39 -0.01 1.87 16
25 H 0.10 2.14 7.07 -2.39 -0.02 2.12 16
26 H 0.39 10.03 8.91 -74.06 -0.66 9.37 16
27 H 0.08 2.95 7.89 -2.39 -0.02 2.93 16
28 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16
29 H 0.11 2.46 5.85 -2.39 -0.01 2.44 16
30 H 0.11 2.06 7.60 -2.39 -0.02 2.04 16
31 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16
Total: -1.00 -74.61 245.72 2.89 -71.72
By element:
Atomic # 1 Polarization: 22.95 SS G_CDS: 0.41 Total: 23.37 kcal
Atomic # 6 Polarization: -9.28 SS G_CDS: 3.75 Total: -5.53 kcal
Atomic # 7 Polarization: -79.35 SS G_CDS: -1.47 Total: -80.82 kcal
Atomic # 8 Polarization: -50.71 SS G_CDS: -1.48 Total: -52.19 kcal
Atomic # 14 Polarization: 41.78 SS G_CDS: 1.67 Total: 43.45 kcal
Total: -74.61 2.89 -71.72 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000335598820.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.915 kcal
(2) G-P(sol) polarization free energy of solvation -74.607 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.692 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.886 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.721 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.806 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds