Wall clock time and date at job start Sun Mar 29 2020 22:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37095 * 120.00394 * 2 1 4 4 H 1.08004 * 120.00143 * 146.80699 * 3 2 1 5 5 C 1.38948 * 119.99897 * 326.80166 * 3 2 1 6 6 N 1.31411 * 119.99842 * 163.05943 * 5 3 2 7 7 Si 1.86800 * 120.00075 * 343.06412 * 5 3 2 8 8 H 1.48504 * 109.47319 * 86.52303 * 7 5 3 9 9 H 1.48500 * 109.47060 * 206.52255 * 7 5 3 10 10 H 1.48500 * 109.47031 * 326.52265 * 7 5 3 11 11 C 1.34781 * 119.99578 * 180.02562 * 2 1 3 12 12 O 1.21295 * 119.99576 * 184.41796 * 11 2 1 13 13 C 1.50698 * 120.00179 * 4.41706 * 11 2 1 14 14 C 1.52999 * 109.47206 * 278.23516 * 13 11 2 15 15 O 1.42898 * 109.47026 * 38.24030 * 13 11 2 16 16 C 1.53006 * 109.46829 * 158.23915 * 13 11 2 17 17 C 1.53002 * 117.51910 * 111.28683 * 16 13 11 18 18 C 1.53002 * 60.00160 * 107.47396 * 17 16 13 19 19 H 1.08997 * 109.47036 * 235.38939 * 1 2 3 20 20 H 1.09005 * 109.46947 * 355.38699 * 1 2 3 21 21 H 1.09002 * 109.46855 * 115.38477 * 1 2 3 22 22 H 0.96997 * 119.99678 * 180.02562 * 6 5 3 23 23 H 1.09001 * 109.47294 * 300.00644 * 14 13 11 24 24 H 1.09004 * 109.46884 * 59.99700 * 14 13 11 25 25 H 1.09003 * 109.47201 * 179.97438 * 14 13 11 26 26 H 0.96693 * 114.00384 * 59.99954 * 15 13 11 27 27 H 1.08999 * 115.54769 * 325.57795 * 16 13 11 28 28 H 1.08996 * 117.49798 * 214.96892 * 17 16 13 29 29 H 1.09002 * 117.49531 * 359.97438 * 17 16 13 30 30 H 1.08996 * 117.50225 * 252.50757 * 18 17 16 31 31 H 1.09004 * 117.49367 * 107.48717 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.0984 1.2635 0.5121 5 6 1.6260 2.2924 -0.6589 6 7 2.0866 3.4945 -0.3949 7 14 0.2659 2.0694 -1.9198 8 1 -1.0510 2.0723 -1.2333 9 1 0.3144 3.1819 -2.9022 10 1 0.4529 0.7766 -2.6262 11 6 2.1388 -1.1673 -0.0005 12 8 3.3491 -1.1689 0.0804 13 6 1.3886 -2.4704 -0.1016 14 6 0.8608 -2.8635 1.2796 15 8 0.2921 -2.3198 -1.0055 16 6 2.3290 -3.5614 -0.6177 17 6 2.7233 -4.6736 0.3562 18 6 1.7521 -4.9682 -0.7888 19 1 -0.3633 -0.5837 0.8458 20 1 -0.3633 1.0244 0.0827 21 1 -0.3633 -0.4406 -0.9285 22 1 1.7201 4.2660 -0.8546 23 1 1.6973 -2.9782 1.9691 24 1 0.1910 -2.0861 1.6474 25 1 0.3178 -3.8058 1.2064 26 1 0.5532 -2.0706 -1.9025 27 1 3.0787 -3.2338 -1.3380 28 1 3.7325 -5.0777 0.2767 29 1 2.3132 -4.6279 1.3650 30 1 0.7030 -5.1165 -0.5333 31 1 2.1225 -5.5662 -1.6216 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335598820.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:33 Heat of formation + Delta-G solvation = -62.805951 kcal Electronic energy + Delta-G solvation = -15162.378849 eV Core-core repulsion = 12637.790697 eV Total energy + Delta-G solvation = -2524.588153 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.39515 -38.75360 -37.03301 -36.19082 -34.04853 -31.53226 -28.20171 -27.37983 -25.68364 -23.19355 -22.10016 -20.38747 -19.13482 -18.48963 -17.63787 -17.26953 -16.52481 -16.01095 -15.62779 -14.82221 -14.61010 -14.47743 -14.12011 -13.97736 -13.66242 -13.37050 -13.03130 -12.58683 -12.44066 -12.15512 -12.06972 -11.80100 -11.42772 -11.29560 -11.11670 -11.00973 -10.11190 -9.72309 -8.52788 -6.17680 1.23080 1.31490 1.45621 1.79457 2.17725 2.54320 2.91008 2.92550 3.32557 3.67083 3.73018 4.01239 4.09851 4.31894 4.38469 4.50196 4.67975 4.73568 4.77715 4.88429 4.96665 5.01557 5.15690 5.29506 5.32150 5.48057 5.97084 6.39258 6.63291 6.89051 7.26234 7.80381 8.64360 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.048597 B = 0.010635 C = 0.009821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.032557 B = 2632.154512 C = 2850.251835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.472 5.472 3 C -0.341 4.341 4 H 0.042 0.958 5 C 0.003 3.997 6 N -0.918 5.918 7 Si 0.965 3.035 8 H -0.238 1.238 9 H -0.292 1.292 10 H -0.250 1.250 11 C 0.430 3.570 12 O -0.613 6.613 13 C 0.167 3.833 14 C -0.138 4.138 15 O -0.541 6.541 16 C -0.193 4.193 17 C -0.173 4.173 18 C -0.136 4.136 19 H 0.080 0.920 20 H 0.061 0.939 21 H 0.092 0.908 22 H 0.281 0.719 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.101 0.899 26 H 0.386 0.614 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.743 -14.998 -1.904 17.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.193 5.193 3 C -0.469 4.469 4 H 0.060 0.940 5 C -0.198 4.198 6 N -0.556 5.556 7 Si 0.787 3.213 8 H -0.162 1.162 9 H -0.219 1.219 10 H -0.174 1.174 11 C 0.219 3.781 12 O -0.498 6.498 13 C 0.123 3.877 14 C -0.195 4.195 15 O -0.348 6.348 16 C -0.213 4.213 17 C -0.210 4.210 18 C -0.173 4.173 19 H 0.099 0.901 20 H 0.080 0.920 21 H 0.110 0.890 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.119 0.881 26 H 0.235 0.765 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.511 -14.932 -1.345 17.240 hybrid contribution 0.680 1.091 -0.819 1.524 sum -7.831 -13.841 -2.163 16.049 Atomic orbital electron populations 1.22557 0.79833 1.02307 1.04240 1.43823 1.06133 1.04514 1.64819 1.18799 1.06124 0.87632 1.34352 0.93999 1.26305 1.01332 0.93646 0.98523 1.69849 1.45049 0.99189 1.41500 0.85728 0.78924 0.78560 0.78115 1.16237 1.21896 1.17387 1.21981 0.88003 0.87002 0.81145 1.90518 1.16646 1.87843 1.54764 1.20557 0.85655 0.88690 0.92761 1.21926 1.01898 1.03687 0.92016 1.86480 1.32265 1.91733 1.24308 1.22493 1.02571 0.90706 1.05483 1.23189 1.00918 1.00558 0.96344 1.22990 0.99745 0.94254 1.00315 0.90138 0.92027 0.89015 0.90973 0.90975 0.91469 0.88051 0.76465 0.89928 0.88561 0.87205 0.87004 0.87375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.03 6.85 127.77 0.87 2.90 16 2 N -0.47 -23.45 2.69 -658.88 -1.77 -25.23 16 3 C -0.34 -20.69 9.53 84.04 0.80 -19.89 16 4 H 0.04 3.00 7.78 -2.91 -0.02 2.97 16 5 C 0.00 0.18 5.24 84.93 0.44 0.62 16 6 N -0.92 -55.89 13.96 21.66 0.30 -55.59 16 7 Si 0.96 41.78 24.37 68.60 1.67 43.45 16 8 H -0.24 -8.99 6.45 99.48 0.64 -8.35 16 9 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 10 H -0.25 -10.08 6.96 99.48 0.69 -9.39 16 11 C 0.43 20.45 6.54 87.66 0.57 21.02 16 12 O -0.61 -35.11 15.86 -3.07 -0.05 -35.16 16 13 C 0.17 5.61 0.78 -11.54 -0.01 5.60 16 14 C -0.14 -3.85 7.33 71.98 0.53 -3.32 16 15 O -0.54 -15.60 9.61 -148.98 -1.43 -17.03 16 16 C -0.19 -5.89 4.84 -10.79 -0.05 -5.94 16 17 C -0.17 -4.25 9.57 30.60 0.29 -3.95 16 18 C -0.14 -2.87 9.80 30.60 0.30 -2.57 16 19 H 0.08 2.69 5.86 -2.39 -0.01 2.68 16 20 H 0.06 2.50 4.63 -2.38 -0.01 2.49 16 21 H 0.09 3.09 5.12 -2.39 -0.01 3.08 16 22 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 23 H 0.07 2.07 6.97 -2.39 -0.02 2.05 16 24 H 0.07 1.89 5.97 -2.39 -0.01 1.87 16 25 H 0.10 2.14 7.07 -2.39 -0.02 2.12 16 26 H 0.39 10.03 8.91 -74.06 -0.66 9.37 16 27 H 0.08 2.95 7.89 -2.39 -0.02 2.93 16 28 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.11 2.46 5.85 -2.39 -0.01 2.44 16 30 H 0.11 2.06 7.60 -2.39 -0.02 2.04 16 31 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -74.61 245.72 2.89 -71.72 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.41 Total: 23.37 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 3.75 Total: -5.53 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -1.47 Total: -80.82 kcal Atomic # 8 Polarization: -50.71 SS G_CDS: -1.48 Total: -52.19 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.67 Total: 43.45 kcal Total: -74.61 2.89 -71.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335598820.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.915 kcal (2) G-P(sol) polarization free energy of solvation -74.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds