Wall clock time and date at job start Sun Mar 29 2020 22:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42894 * 113.28539 * 2 1 4 4 C 1.53500 * 114.20511 * 133.06768 * 2 1 3 5 5 N 1.47062 * 87.98589 * 139.85331 * 4 2 1 6 6 C 1.34784 * 136.05762 * 152.84499 * 5 4 2 7 7 O 1.21279 * 119.99925 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99961 * 179.97438 * 6 5 4 9 9 C 1.52992 * 109.47257 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47257 * 179.97438 * 9 8 6 11 11 H 1.07999 * 119.99988 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00045 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99915 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 120.00035 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46889 * 90.00701 * 14 12 10 16 16 H 1.48505 * 109.47302 * 210.00596 * 14 12 10 17 17 H 1.48498 * 109.47131 * 330.00397 * 14 12 10 18 18 C 1.47061 * 87.88485 * 333.09948 * 5 4 2 19 19 H 1.08999 * 109.47089 * 286.93029 * 1 2 3 20 20 H 1.08992 * 109.47163 * 46.93198 * 1 2 3 21 21 H 1.09000 * 109.47261 * 166.93459 * 1 2 3 22 22 H 0.96700 * 113.99741 * 313.07049 * 3 2 1 23 23 H 1.08999 * 113.47071 * 25.06792 * 4 2 1 24 24 H 1.09000 * 113.46754 * 254.63022 * 4 2 1 25 25 H 1.09004 * 109.46932 * 300.00223 * 8 6 5 26 26 H 1.08997 * 109.47392 * 59.99562 * 8 6 5 27 27 H 1.09004 * 109.47330 * 299.99977 * 9 8 6 28 28 H 1.09005 * 109.47124 * 59.99773 * 9 8 6 29 29 H 0.97000 * 119.99655 * 179.97438 * 13 12 10 30 30 H 1.09001 * 113.46984 * 141.68050 * 18 5 4 31 31 H 1.09003 * 113.46580 * 272.11929 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0948 1.3126 0.0000 4 6 2.1593 -0.9560 1.0228 5 7 3.1628 -1.3016 0.0048 6 6 4.4375 -1.7397 0.0080 7 8 5.0089 -1.9350 1.0597 8 6 5.1525 -1.9869 -1.2954 9 6 6.5743 -2.4759 -1.0123 10 6 7.2891 -2.7237 -2.3156 11 1 6.7801 -2.5502 -3.2522 12 6 8.5926 -3.1730 -2.3124 13 7 9.2166 -3.3887 -3.4498 14 14 9.4728 -3.4739 -0.6925 15 1 9.2499 -4.8773 -0.2613 16 1 10.9280 -3.2351 -0.8680 17 1 8.9403 -2.5484 0.3396 18 6 2.1656 -0.9525 -1.0182 19 1 -0.3633 0.2993 0.9831 20 1 -0.3633 0.7017 -0.7507 21 1 -0.3634 -1.0011 -0.2323 22 1 1.6962 1.9123 -0.6453 23 1 1.5113 -1.7894 1.2941 24 1 2.5790 -0.4479 1.8910 25 1 4.6152 -2.7439 -1.8667 26 1 5.1938 -1.0607 -1.8685 27 1 7.1118 -1.7192 -0.4408 28 1 6.5325 -3.4023 -0.4394 29 1 10.1337 -3.7045 -3.4475 30 1 2.5906 -0.4414 -1.8821 31 1 1.5193 -1.7851 -1.2962 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335605901.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:09 Heat of formation + Delta-G solvation = -52.781472 kcal Electronic energy + Delta-G solvation = -14106.198338 eV Core-core repulsion = 11582.044879 eV Total energy + Delta-G solvation = -2524.153459 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.58857 -38.08136 -35.33700 -33.44908 -31.44366 -30.77594 -27.55025 -26.25159 -25.18177 -21.32713 -20.41462 -18.76969 -17.16307 -16.86131 -16.09986 -15.79290 -15.25833 -14.76061 -14.09172 -14.03354 -13.72275 -13.01575 -12.59793 -12.47881 -12.31720 -12.20324 -11.96239 -11.41339 -10.95282 -10.93655 -10.19526 -10.10978 -10.01143 -9.75223 -9.20317 -9.12887 -8.55022 -8.47620 -6.01051 -3.99628 3.01266 3.14348 3.40158 3.46449 3.58671 3.66011 4.04825 4.53456 4.57983 4.70069 5.04476 5.24741 5.26969 5.34535 5.39129 5.44580 5.59525 5.63691 5.73199 5.98382 6.13695 6.20078 6.71960 7.38721 7.39041 7.46379 7.79402 7.97627 8.51366 8.65413 9.01671 9.62149 11.11793 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.061127 B = 0.006257 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.954467 B = 4474.206812 C = 4699.333099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.087 3.913 3 O -0.532 6.532 4 C 0.110 3.890 5 N -0.648 5.648 6 C 0.542 3.458 7 O -0.538 6.538 8 C -0.113 4.113 9 C 0.001 3.999 10 C -0.524 4.524 11 H 0.072 0.928 12 C 0.069 3.931 13 N -0.904 5.904 14 Si 0.877 3.123 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.261 1.261 18 C 0.076 3.924 19 H 0.069 0.931 20 H 0.066 0.934 21 H 0.074 0.926 22 H 0.380 0.620 23 H 0.093 0.907 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.024 0.976 28 H 0.019 0.981 29 H 0.263 0.737 30 H 0.084 0.916 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.812 6.987 4.809 21.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.044 3.956 3 O -0.337 6.337 4 C -0.013 4.013 5 N -0.386 5.386 6 C 0.335 3.665 7 O -0.414 6.414 8 C -0.152 4.152 9 C -0.037 4.037 10 C -0.562 4.562 11 H 0.091 0.909 12 C -0.132 4.132 13 N -0.543 5.543 14 Si 0.704 3.296 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.185 1.185 18 C -0.048 4.048 19 H 0.088 0.912 20 H 0.085 0.915 21 H 0.093 0.907 22 H 0.228 0.772 23 H 0.111 0.889 24 H 0.100 0.900 25 H 0.102 0.898 26 H 0.103 0.897 27 H 0.043 0.957 28 H 0.037 0.963 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.677 6.468 5.778 20.592 hybrid contribution 0.135 -0.023 0.210 0.251 sum -18.541 6.445 5.988 20.523 Atomic orbital electron populations 1.22185 0.93414 1.03426 1.03223 1.22430 0.91870 0.83856 0.97405 1.86592 1.63662 1.20777 1.62686 1.22980 0.88882 0.95157 0.94264 1.49598 1.10707 1.68407 1.09841 1.21195 0.78331 0.74058 0.92963 1.90659 1.64994 1.51320 1.34431 1.21604 0.98729 1.02639 0.92259 1.19396 0.89957 0.96732 0.97631 1.21097 0.97862 1.44945 0.92275 0.90945 1.24959 0.97296 0.94658 0.96262 1.69914 1.12304 1.46517 1.25569 0.86800 0.78537 0.79404 0.84867 1.20212 1.21384 1.18512 1.23658 0.89573 0.97325 0.94263 0.91161 0.91521 0.90729 0.77161 0.88863 0.90010 0.89799 0.89702 0.95746 0.96259 0.92721 0.89780 0.89148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 9.54 37.16 0.35 -0.56 16 2 C 0.09 0.81 2.03 -90.24 -0.18 0.63 16 3 O -0.53 -5.66 13.55 -35.23 -0.48 -6.14 16 4 C 0.11 1.36 8.05 -8.52 -0.07 1.29 16 5 N -0.65 -10.23 3.69 -185.39 -0.68 -10.91 16 6 C 0.54 11.20 8.08 -10.98 -0.09 11.11 16 7 O -0.54 -13.25 16.76 5.56 0.09 -13.16 16 8 C -0.11 -2.38 5.47 -27.89 -0.15 -2.53 16 9 C 0.00 0.02 3.33 -27.89 -0.09 -0.07 16 10 C -0.52 -15.43 9.66 -34.44 -0.33 -15.76 16 11 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 12 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 13 N -0.90 -28.47 13.96 55.43 0.77 -27.69 16 14 Si 0.88 23.14 27.47 -169.99 -4.67 18.47 16 15 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 17 H -0.26 -6.91 6.54 56.52 0.37 -6.54 16 18 C 0.08 0.81 7.83 -8.65 -0.07 0.74 16 19 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 20 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 21 H 0.07 0.35 7.91 -51.93 -0.41 -0.07 16 22 H 0.38 2.18 9.03 45.56 0.41 2.59 16 23 H 0.09 0.91 8.10 -51.93 -0.42 0.49 16 24 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 26 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 27 H 0.02 0.67 7.16 -51.93 -0.37 0.30 16 28 H 0.02 0.52 7.53 -51.93 -0.39 0.12 16 29 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.09 0.75 7.95 -51.93 -0.41 0.34 16 LS Contribution 268.46 15.07 4.05 4.05 Total: -1.00 -37.02 268.46 -5.37 -42.38 By element: Atomic # 1 Polarization: -0.12 SS G_CDS: -3.72 Total: -3.84 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -0.73 Total: -3.15 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.09 Total: -38.60 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.38 Total: -19.30 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -4.67 Total: 18.47 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -37.02 -5.37 -42.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335605901.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.397 kcal (2) G-P(sol) polarization free energy of solvation -37.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds