Wall clock time and date at job start Sun Mar 29 2020 22:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42894 * 113.28539 * 2 1 4 4 C 1.53500 * 114.20511 * 133.06768 * 2 1 3 5 5 N 1.47062 * 87.98589 * 139.85331 * 4 2 1 6 6 C 1.34784 * 136.05762 * 152.84499 * 5 4 2 7 7 O 1.21279 * 119.99925 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99961 * 179.97438 * 6 5 4 9 9 C 1.52992 * 109.47257 * 180.02562 * 8 6 5 10 10 C 1.50700 * 109.47257 * 179.97438 * 9 8 6 11 11 H 1.07999 * 119.99988 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00045 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99915 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 120.00035 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46889 * 90.00701 * 14 12 10 16 16 H 1.48505 * 109.47302 * 210.00596 * 14 12 10 17 17 H 1.48498 * 109.47131 * 330.00397 * 14 12 10 18 18 C 1.47061 * 87.88485 * 333.09948 * 5 4 2 19 19 H 1.08999 * 109.47089 * 286.93029 * 1 2 3 20 20 H 1.08992 * 109.47163 * 46.93198 * 1 2 3 21 21 H 1.09000 * 109.47261 * 166.93459 * 1 2 3 22 22 H 0.96700 * 113.99741 * 313.07049 * 3 2 1 23 23 H 1.08999 * 113.47071 * 25.06792 * 4 2 1 24 24 H 1.09000 * 113.46754 * 254.63022 * 4 2 1 25 25 H 1.09004 * 109.46932 * 300.00223 * 8 6 5 26 26 H 1.08997 * 109.47392 * 59.99562 * 8 6 5 27 27 H 1.09004 * 109.47330 * 299.99977 * 9 8 6 28 28 H 1.09005 * 109.47124 * 59.99773 * 9 8 6 29 29 H 0.97000 * 119.99655 * 179.97438 * 13 12 10 30 30 H 1.09001 * 113.46984 * 141.68050 * 18 5 4 31 31 H 1.09003 * 113.46580 * 272.11929 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0948 1.3126 0.0000 4 6 2.1593 -0.9560 1.0228 5 7 3.1628 -1.3016 0.0048 6 6 4.4375 -1.7397 0.0080 7 8 5.0089 -1.9350 1.0597 8 6 5.1525 -1.9869 -1.2954 9 6 6.5743 -2.4759 -1.0123 10 6 7.2891 -2.7237 -2.3156 11 1 6.7801 -2.5502 -3.2522 12 6 8.5926 -3.1730 -2.3124 13 7 9.2166 -3.3887 -3.4498 14 14 9.4728 -3.4739 -0.6925 15 1 9.2499 -4.8773 -0.2613 16 1 10.9280 -3.2351 -0.8680 17 1 8.9403 -2.5484 0.3396 18 6 2.1656 -0.9525 -1.0182 19 1 -0.3633 0.2993 0.9831 20 1 -0.3633 0.7017 -0.7507 21 1 -0.3634 -1.0011 -0.2323 22 1 1.6962 1.9123 -0.6453 23 1 1.5113 -1.7894 1.2941 24 1 2.5790 -0.4479 1.8910 25 1 4.6152 -2.7439 -1.8667 26 1 5.1938 -1.0607 -1.8685 27 1 7.1118 -1.7192 -0.4408 28 1 6.5325 -3.4023 -0.4394 29 1 10.1337 -3.7045 -3.4475 30 1 2.5906 -0.4414 -1.8821 31 1 1.5193 -1.7851 -1.2962 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335605901.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:09 Heat of formation + Delta-G solvation = -82.771011 kcal Electronic energy + Delta-G solvation = -14107.498782 eV Core-core repulsion = 11582.044879 eV Total energy + Delta-G solvation = -2525.453903 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.65114 -39.51388 -36.28397 -35.59484 -33.41457 -31.78665 -28.93758 -27.19336 -26.76725 -23.05946 -21.55576 -20.14843 -19.13066 -17.88678 -17.46912 -16.99105 -16.62704 -16.29389 -15.72480 -15.27692 -14.87816 -14.66813 -14.15909 -13.91917 -13.49408 -13.13651 -12.94118 -12.82889 -12.74634 -12.17013 -12.03122 -11.84600 -11.77136 -11.44797 -11.04772 -10.81273 -10.66089 -9.76197 -8.34851 -6.38099 1.30456 1.32276 1.48263 1.58517 1.82815 2.32541 2.92391 3.00407 3.29688 3.63497 3.94488 4.15673 4.27320 4.38470 4.42364 4.54508 4.56356 4.77261 4.83051 4.95977 4.96618 5.07764 5.27860 5.33895 5.36728 5.55913 6.19736 6.63625 6.68764 6.88124 7.12817 7.27406 8.80815 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.061127 B = 0.006257 C = 0.005957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.954467 B = 4474.206812 C = 4699.333099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.104 3.896 3 O -0.561 6.561 4 C 0.096 3.904 5 N -0.655 5.655 6 C 0.537 3.463 7 O -0.594 6.594 8 C -0.104 4.104 9 C 0.006 3.994 10 C -0.530 4.530 11 H 0.051 0.949 12 C 0.017 3.983 13 N -0.941 5.941 14 Si 0.937 3.063 15 H -0.266 1.266 16 H -0.274 1.274 17 H -0.267 1.267 18 C 0.071 3.929 19 H 0.073 0.927 20 H 0.087 0.913 21 H 0.090 0.910 22 H 0.401 0.599 23 H 0.125 0.875 24 H 0.058 0.942 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.006 0.994 28 H 0.009 0.991 29 H 0.269 0.731 30 H 0.087 0.913 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.063 7.295 5.037 23.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.062 3.938 3 O -0.370 6.370 4 C -0.026 4.026 5 N -0.389 5.389 6 C 0.329 3.671 7 O -0.475 6.475 8 C -0.144 4.144 9 C -0.032 4.032 10 C -0.568 4.568 11 H 0.069 0.931 12 C -0.181 4.181 13 N -0.581 5.581 14 Si 0.761 3.239 15 H -0.191 1.191 16 H -0.199 1.199 17 H -0.191 1.191 18 C -0.051 4.051 19 H 0.092 0.908 20 H 0.105 0.895 21 H 0.109 0.891 22 H 0.253 0.747 23 H 0.142 0.858 24 H 0.076 0.924 25 H 0.119 0.881 26 H 0.113 0.887 27 H 0.025 0.975 28 H 0.028 0.972 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -21.007 6.809 5.966 22.874 hybrid contribution 0.720 -0.050 0.071 0.725 sum -20.287 6.760 6.037 22.219 Atomic orbital electron populations 1.22140 0.89616 1.05146 1.04251 1.22350 0.94068 0.82721 0.94623 1.86542 1.64912 1.21726 1.63813 1.23440 0.88258 0.97171 0.93697 1.49618 1.10066 1.65791 1.13466 1.20859 0.80097 0.74489 0.91651 1.90621 1.66923 1.54278 1.35655 1.21383 0.96209 1.03436 0.93357 1.19226 0.92747 0.95844 0.95387 1.21367 0.98190 1.44449 0.92829 0.93058 1.25761 0.98247 0.94587 0.99475 1.70012 1.13004 1.47570 1.27540 0.85852 0.77927 0.79533 0.80554 1.19078 1.19910 1.19123 1.24115 0.88365 0.98885 0.93775 0.90797 0.89453 0.89081 0.74737 0.85774 0.92381 0.88061 0.88728 0.97512 0.97246 0.92220 0.89459 0.85767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.54 71.98 0.69 -0.32 16 2 C 0.10 1.63 2.03 -10.55 -0.02 1.61 16 3 O -0.56 -10.70 13.55 -148.98 -2.02 -12.72 16 4 C 0.10 2.19 8.05 83.17 0.67 2.86 16 5 N -0.65 -19.72 3.69 -859.33 -3.17 -22.89 16 6 C 0.54 22.16 8.08 87.66 0.71 22.87 16 7 O -0.59 -29.89 16.76 -3.03 -0.05 -29.94 16 8 C -0.10 -4.38 5.47 29.85 0.16 -4.22 16 9 C 0.01 0.31 3.33 29.85 0.10 0.41 16 10 C -0.53 -31.71 9.66 25.60 0.25 -31.46 16 11 H 0.05 3.20 7.99 -2.91 -0.02 3.18 16 12 C 0.02 1.06 5.47 84.65 0.46 1.52 16 13 N -0.94 -59.75 13.96 21.45 0.30 -59.45 16 14 Si 0.94 48.10 27.47 68.60 1.88 49.99 16 15 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 16 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16 17 H -0.27 -13.86 6.54 99.48 0.65 -13.21 16 18 C 0.07 1.28 7.83 83.09 0.65 1.93 16 19 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 20 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 21 H 0.09 0.36 7.91 -2.39 -0.02 0.34 16 22 H 0.40 3.50 9.03 -74.06 -0.67 2.83 16 23 H 0.12 2.04 8.10 -2.39 -0.02 2.02 16 24 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.10 3.85 8.14 -2.38 -0.02 3.83 16 26 H 0.09 3.73 8.14 -2.39 -0.02 3.72 16 27 H 0.01 0.37 7.16 -2.38 -0.02 0.35 16 28 H 0.01 0.50 7.53 -2.38 -0.02 0.48 16 29 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 30 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.12 1.49 7.95 -2.39 -0.02 1.47 16 Total: -1.00 -81.88 268.46 1.00 -80.88 By element: Atomic # 1 Polarization: -1.47 SS G_CDS: 0.39 Total: -1.07 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 3.67 Total: -4.80 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -2.87 Total: -82.34 kcal Atomic # 8 Polarization: -40.59 SS G_CDS: -2.07 Total: -42.66 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 1.88 Total: 49.99 kcal Total: -81.88 1.00 -80.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335605901.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.887 kcal (2) G-P(sol) polarization free energy of solvation -81.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds