Wall clock time and date at job start Sun Mar 29 2020 21:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 N 1.31740 * 126.22657 * 297.59594 * 3 2 1 5 5 N 1.39841 * 109.88515 * 180.13901 * 4 3 2 6 6 C 1.36702 * 125.37137 * 179.81117 * 5 4 3 7 7 H 1.08002 * 120.00506 * 179.69507 * 6 5 4 8 8 C 1.39140 * 119.99850 * 359.41141 * 6 5 4 9 9 N 1.31224 * 119.99852 * 0.27912 * 8 6 5 10 10 Si 1.86798 * 120.00369 * 180.28082 * 8 6 5 11 11 H 1.48500 * 109.47353 * 89.99582 * 10 8 6 12 12 H 1.48501 * 109.47293 * 210.00032 * 10 8 6 13 13 H 1.48499 * 109.46749 * 330.00185 * 10 8 6 14 14 C 1.37900 * 109.26127 * 359.54019 * 5 4 3 15 15 C 1.39052 * 133.49532 * 180.29079 * 14 5 4 16 16 C 1.37807 * 119.89390 * 179.97438 * 15 14 5 17 17 C 1.38809 * 120.59981 * 0.02562 * 16 15 14 18 18 C 1.37696 * 120.39670 * 359.97437 * 17 16 15 19 19 C 1.39538 * 119.69490 * 359.97438 * 18 17 16 20 20 H 0.97000 * 119.99412 * 180.02562 * 9 8 6 21 21 H 1.08005 * 120.04736 * 359.94788 * 15 14 5 22 22 H 1.08007 * 119.70329 * 179.97438 * 16 15 14 23 23 H 1.07994 * 119.80146 * 180.02562 * 17 16 15 24 24 H 1.07997 * 120.14554 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.3468 -0.4913 0.9418 5 7 4.6886 -0.3056 0.5946 6 6 5.7618 -0.6935 1.3474 7 1 6.7651 -0.5104 0.9921 8 6 5.5615 -1.3188 2.5741 9 7 4.3424 -1.5411 3.0059 10 14 7.0278 -1.8417 3.6064 11 1 7.4140 -0.7328 4.5155 12 1 6.6665 -3.0373 4.4098 13 1 8.1687 -2.1708 2.7147 14 6 4.7586 0.3250 -0.6298 15 6 5.8146 0.7388 -1.4342 16 6 5.5589 1.3585 -2.6383 17 6 4.2538 1.5754 -3.0582 18 6 3.1943 1.1732 -2.2761 19 6 3.4366 0.5433 -1.0547 20 1 4.2028 -1.9767 3.8613 21 1 6.8335 0.5751 -1.1156 22 1 6.3815 1.6790 -3.2605 23 1 4.0682 2.0619 -4.0043 24 1 2.1805 1.3436 -2.6070 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336394039.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:23 Heat of formation + Delta-G solvation = 103.170974 kcal Electronic energy + Delta-G solvation = -12874.225129 eV Core-core repulsion = 10560.602853 eV Total energy + Delta-G solvation = -2313.622277 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 213.060 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.81043 -37.87562 -37.50977 -35.42866 -33.26922 -30.71280 -30.33805 -27.50976 -24.49491 -23.34991 -22.63134 -19.54678 -19.02761 -17.56525 -16.90191 -16.01198 -15.97496 -15.78290 -14.89146 -14.69792 -14.35140 -14.16965 -13.81966 -13.57305 -13.06734 -12.96447 -12.53446 -12.48846 -12.09114 -11.69216 -11.36232 -11.16962 -10.67134 -9.32858 -9.04029 -8.59877 -6.23565 0.11174 0.71558 1.12241 1.39579 1.51075 1.56668 1.60379 1.99964 2.36894 2.48782 2.94491 3.17341 3.20669 3.96018 4.26114 4.39214 4.46310 4.72674 4.82758 5.00410 5.23962 5.28827 5.65165 5.68417 5.78831 5.86130 6.28037 6.47174 6.49107 7.17265 7.27503 8.39098 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.028487 B = 0.011609 C = 0.008272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.672483 B = 2411.438297 C = 3384.262279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.333 3.667 3 C -0.024 4.024 4 N -0.208 5.208 5 N -0.170 5.170 6 C -0.326 4.326 7 H 0.149 0.851 8 C -0.006 4.006 9 N -0.815 5.815 10 Si 1.019 2.981 11 H -0.263 1.263 12 H -0.277 1.277 13 H -0.242 1.242 14 C 0.016 3.984 15 C -0.113 4.113 16 C -0.102 4.102 17 C -0.142 4.142 18 C -0.083 4.083 19 C -0.146 4.146 20 H 0.283 0.717 21 H 0.135 0.865 22 H 0.163 0.837 23 H 0.157 0.843 24 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.963 3.435 -6.696 10.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.143 5.143 2 C 0.019 3.981 3 C -0.180 4.180 4 N -0.042 5.042 5 N 0.055 4.945 6 C -0.461 4.461 7 H 0.166 0.834 8 C -0.219 4.219 9 N -0.444 5.444 10 Si 0.837 3.163 11 H -0.188 1.188 12 H -0.202 1.202 13 H -0.165 1.165 14 C -0.099 4.099 15 C -0.135 4.135 16 C -0.123 4.123 17 C -0.162 4.162 18 C -0.103 4.103 19 C -0.157 4.157 20 H 0.093 0.907 21 H 0.152 0.848 22 H 0.180 0.820 23 H 0.174 0.826 24 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.089 2.759 -5.407 8.598 hybrid contribution 0.417 -0.118 0.278 0.515 sum 6.506 2.641 -5.129 8.695 Atomic orbital electron populations 1.81086 1.11103 1.12375 1.09734 1.23863 0.90264 0.91854 0.92100 1.18100 0.86338 1.15003 0.98572 1.78060 0.87362 1.19379 1.19374 1.44885 1.03359 1.34896 1.11406 1.20782 0.85998 1.38189 1.01096 0.83360 1.26873 1.01407 0.95345 0.98265 1.70271 1.23194 1.31485 1.19427 0.84569 0.76087 0.78056 0.77547 1.18807 1.20155 1.16467 1.19349 0.96331 1.04545 0.89681 1.20353 0.96591 1.01686 0.94862 1.21208 0.97909 0.98335 0.94807 1.21185 0.91720 1.02463 1.00784 1.20628 1.00279 0.97727 0.91687 1.19435 0.90640 1.08157 0.97513 0.90677 0.84753 0.81998 0.82565 0.85642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -21.29 18.54 19.00 0.35 -20.93 14 2 C 0.33 15.72 15.95 88.33 1.41 17.13 14 3 C -0.02 -1.19 7.17 42.71 0.31 -0.88 14 4 N -0.21 -11.55 10.23 -47.60 -0.49 -12.04 14 5 N -0.17 -8.85 3.73 -184.05 -0.69 -9.54 14 6 C -0.33 -15.90 10.12 84.15 0.85 -15.05 14 7 H 0.15 6.21 7.72 -2.91 -0.02 6.18 14 8 C -0.01 -0.29 5.50 85.00 0.47 0.18 14 9 N -0.82 -43.47 11.74 21.69 0.25 -43.21 14 10 Si 1.02 35.36 29.55 68.60 2.03 37.39 14 11 H -0.26 -8.86 7.11 99.48 0.71 -8.16 14 12 H -0.28 -9.61 7.11 99.48 0.71 -8.91 14 13 H -0.24 -7.56 7.11 99.48 0.71 -6.85 14 14 C 0.02 0.72 6.80 38.95 0.26 0.99 14 15 C -0.11 -3.95 9.95 22.36 0.22 -3.73 14 16 C -0.10 -2.79 10.02 22.30 0.22 -2.56 14 17 C -0.14 -3.91 10.02 22.28 0.22 -3.69 14 18 C -0.08 -2.91 10.10 22.46 0.23 -2.68 14 19 C -0.15 -6.49 6.31 -20.09 -0.13 -6.61 14 20 H 0.28 13.87 8.30 -92.71 -0.77 13.10 14 21 H 0.13 4.09 7.95 -2.91 -0.02 4.07 14 22 H 0.16 2.97 8.06 -2.91 -0.02 2.95 14 23 H 0.16 3.01 8.06 -2.91 -0.02 2.99 14 24 H 0.13 3.93 8.06 -2.91 -0.02 3.90 14 Total: -1.00 -62.72 235.19 6.76 -55.96 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.23 Total: 9.29 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: 4.07 Total: -16.91 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: -0.57 Total: -85.72 kcal Atomic # 14 Polarization: 35.36 SS G_CDS: 2.03 Total: 37.39 kcal Total: -62.72 6.76 -55.96 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336394039.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.130 kcal (2) G-P(sol) polarization free energy of solvation -62.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds