Wall clock time and date at job start Sun Mar 29 2020 22:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99831 * 2 1 4 4 H 1.48498 * 109.47174 * 269.99878 * 3 2 1 5 5 H 1.48504 * 109.46913 * 30.00128 * 3 2 1 6 6 H 1.48501 * 109.47062 * 149.99927 * 3 2 1 7 7 C 1.37875 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99970 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00042 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47331 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47004 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00413 * 0.27039 * 11 10 9 13 13 N 1.34784 * 119.99635 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99971 * 179.97438 * 13 11 10 15 15 H 1.09007 * 112.84837 * 26.68712 * 14 13 11 16 16 C 1.53784 * 113.61546 * 255.49870 * 14 13 11 17 17 C 1.53784 * 87.07520 * 270.88168 * 16 14 13 18 18 C 1.53773 * 113.61759 * 157.99551 * 14 13 11 19 19 H 1.09001 * 113.61468 * 334.57061 * 18 14 13 20 20 O 1.42898 * 113.62099 * 203.66349 * 18 14 13 21 21 H 0.97000 * 120.00459 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47392 * 59.99708 * 9 7 2 23 23 H 1.09002 * 109.47260 * 299.99953 * 9 7 2 24 24 H 1.09005 * 109.47089 * 59.99750 * 10 9 7 25 25 H 1.09002 * 109.46787 * 300.00092 * 10 9 7 26 26 H 0.96999 * 120.00044 * 0.02562 * 13 11 10 27 27 H 1.08997 * 113.61263 * 25.42986 * 16 14 13 28 28 H 1.08999 * 113.61280 * 156.25172 * 16 14 13 29 29 H 1.09003 * 113.61206 * 89.11834 * 17 16 14 30 30 H 1.09002 * 113.61009 * 219.93533 * 17 16 14 31 31 H 0.96697 * 114.00596 * 179.97438 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5285 -2.6364 0.0022 12 8 6.1349 -1.5861 0.0080 13 7 6.2025 -3.8036 0.0028 14 6 7.6674 -3.8036 0.0035 15 1 8.0905 -2.9059 0.4545 16 6 8.2841 -4.1568 -1.3603 17 6 8.2308 -5.6278 -0.9150 18 6 8.2833 -5.1097 0.5320 19 1 7.6315 -5.6548 1.2148 20 8 9.6112 -4.9537 1.0363 21 1 -0.4851 0.8400 -0.0004 22 1 3.8745 -0.6799 0.8911 23 1 3.8752 -0.6804 -0.8888 24 1 3.6585 -3.1502 -0.8893 25 1 3.6579 -3.1505 0.8907 26 1 5.7175 -4.6437 0.0021 27 1 7.6329 -3.9326 -2.2052 28 1 9.2966 -3.7759 -1.4935 29 1 7.2948 -6.1266 -1.1666 30 1 9.1091 -6.2041 -1.2059 31 1 10.0038 -5.7717 1.3705 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378693935.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:23 Heat of formation + Delta-G solvation = -102.762205 kcal Electronic energy + Delta-G solvation = -13941.603884 eV Core-core repulsion = 11415.283098 eV Total energy + Delta-G solvation = -2526.320786 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.32758 -39.66037 -36.21318 -35.53933 -33.95143 -33.08903 -28.35003 -26.02217 -25.96064 -23.32686 -21.36073 -20.49834 -19.27231 -18.27980 -17.64905 -16.92784 -16.61354 -16.25146 -15.80703 -15.59293 -14.96735 -14.70305 -14.41849 -14.02116 -13.41568 -13.33292 -12.93638 -12.60826 -12.17188 -12.04470 -11.97290 -11.77528 -11.40476 -11.24296 -10.90071 -10.78508 -10.75116 -10.09770 -8.31820 -6.34471 1.32617 1.34825 1.49901 1.62347 2.00093 2.34720 3.04101 3.24510 3.51642 3.72264 3.86445 3.98868 4.08237 4.38014 4.49563 4.59825 4.68710 4.92133 4.99990 5.01283 5.03915 5.16744 5.34053 5.43976 5.55390 5.61081 6.23168 6.54804 6.72008 6.87904 7.28070 7.31191 8.83808 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.067511 B = 0.005689 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.645522 B = 4920.633346 C = 5097.896679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.016 3.984 3 Si 0.936 3.064 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.528 4.528 8 H 0.053 0.947 9 C 0.003 3.997 10 C -0.114 4.114 11 C 0.517 3.483 12 O -0.586 6.586 13 N -0.696 5.696 14 C 0.106 3.894 15 H 0.067 0.933 16 C -0.150 4.150 17 C -0.152 4.152 18 C 0.088 3.912 19 H 0.092 0.908 20 O -0.566 6.566 21 H 0.267 0.733 22 H 0.008 0.992 23 H 0.008 0.992 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.419 0.581 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.221 -15.123 -0.197 22.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.182 4.182 3 Si 0.761 3.239 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.566 4.566 8 H 0.071 0.929 9 C -0.035 4.035 10 C -0.154 4.154 11 C 0.306 3.694 12 O -0.466 6.466 13 N -0.350 5.350 14 C 0.000 4.000 15 H 0.086 0.914 16 C -0.189 4.189 17 C -0.190 4.190 18 C 0.027 3.973 19 H 0.110 0.890 20 O -0.375 6.375 21 H 0.076 0.924 22 H 0.027 0.973 23 H 0.026 0.974 24 H 0.125 0.875 25 H 0.125 0.875 26 H 0.257 0.743 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.125 0.875 30 H 0.109 0.891 31 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 17.409 -13.670 -0.352 22.137 hybrid contribution -0.140 0.224 0.115 0.288 sum 17.269 -13.445 -0.237 21.887 Atomic orbital electron populations 1.70011 1.07720 1.28090 1.52530 1.25763 0.95450 1.02714 0.94290 0.85868 0.79204 0.79738 0.79135 1.19379 1.20283 1.18816 1.21424 0.91125 0.93806 1.50264 0.92868 1.19243 0.94057 0.93886 0.96328 1.21501 0.88490 0.99933 1.05437 1.21323 0.91150 0.83181 0.73780 1.90648 1.71422 1.33445 1.51049 1.45388 1.05445 1.08874 1.75298 1.21893 0.80641 0.99178 0.98322 0.91440 1.23311 1.01126 0.98060 0.96367 1.23563 1.04417 0.95570 0.95411 1.22920 0.84863 0.94409 0.95071 0.88994 1.86391 1.28419 1.39770 1.82897 0.92356 0.97314 0.97401 0.87468 0.87522 0.74265 0.91792 0.89504 0.87506 0.89143 0.74345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.07 13.96 21.45 0.30 -58.77 16 2 C 0.02 0.93 5.47 84.66 0.46 1.39 16 3 Si 0.94 47.17 27.47 68.60 1.88 49.05 16 4 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 6 H -0.26 -13.32 6.54 99.48 0.65 -12.67 16 7 C -0.53 -30.45 9.66 25.60 0.25 -30.20 16 8 H 0.05 3.20 7.99 -2.91 -0.02 3.18 16 9 C 0.00 0.14 3.33 29.85 0.10 0.24 16 10 C -0.11 -4.24 5.64 29.85 0.17 -4.07 16 11 C 0.52 18.54 7.83 87.65 0.69 19.23 16 12 O -0.59 -26.88 15.62 -3.01 -0.05 -26.92 16 13 N -0.70 -17.39 5.27 -440.04 -2.32 -19.71 16 14 C 0.11 2.61 4.12 45.52 0.19 2.80 16 15 H 0.07 2.20 7.53 -2.38 -0.02 2.18 16 16 C -0.15 -3.13 7.81 31.12 0.24 -2.88 16 17 C -0.15 -2.00 7.81 31.12 0.24 -1.76 16 18 C 0.09 1.40 5.01 31.12 0.16 1.56 16 19 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 20 O -0.57 -9.43 13.59 -148.98 -2.02 -11.46 16 21 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 22 H 0.01 0.45 7.15 -2.39 -0.02 0.43 16 23 H 0.01 0.40 7.53 -2.39 -0.02 0.38 16 24 H 0.11 3.55 8.14 -2.38 -0.02 3.53 16 25 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 26 H 0.42 7.07 8.71 -92.71 -0.81 6.26 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.40 2.42 9.12 -74.06 -0.68 1.75 16 Total: -1.00 -76.70 266.66 -0.11 -76.81 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -0.40 Total: 4.69 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 2.49 Total: -13.70 kcal Atomic # 7 Polarization: -76.46 SS G_CDS: -2.02 Total: -78.48 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -2.07 Total: -38.38 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.88 Total: 49.05 kcal Total: -76.70 -0.11 -76.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378693935.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.952 kcal (2) G-P(sol) polarization free energy of solvation -76.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds