Wall clock time and date at job start Sun Mar 29 2020 22:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99601 * 2 1 4 4 H 1.48500 * 109.47417 * 270.00007 * 3 2 1 5 5 H 1.48498 * 109.47346 * 30.00694 * 3 2 1 6 6 H 1.48508 * 109.46733 * 150.00222 * 3 2 1 7 7 C 1.37868 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00511 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99896 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.47275 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47204 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.46972 * 179.97438 * 11 10 9 13 13 C 1.34776 * 120.00191 * 179.97438 * 12 11 10 14 14 O 1.21287 * 119.99803 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00413 * 179.97438 * 13 12 11 16 16 H 1.08995 * 113.03469 * 293.02320 * 15 13 12 17 17 C 1.54036 * 113.86128 * 65.00082 * 15 13 12 18 18 C 1.54038 * 85.82157 * 136.72729 * 17 15 13 19 19 O 1.44173 * 113.86532 * 160.86772 * 15 13 12 20 20 H 0.96999 * 120.00504 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.46935 * 60.00152 * 9 7 2 22 22 H 1.08999 * 109.47506 * 299.99811 * 9 7 2 23 23 H 1.08999 * 109.47353 * 59.99795 * 10 9 7 24 24 H 1.09008 * 109.46893 * 300.00414 * 10 9 7 25 25 H 1.08999 * 109.47225 * 60.00034 * 11 10 9 26 26 H 1.08997 * 109.46795 * 299.99831 * 11 10 9 27 27 H 0.97000 * 120.00149 * 359.97438 * 12 11 10 28 28 H 1.08999 * 113.81483 * 250.95354 * 17 15 13 29 29 H 1.09001 * 113.82018 * 22.50074 * 17 15 13 30 30 H 1.09001 * 113.86540 * 91.57040 * 18 17 15 31 31 H 1.08999 * 113.86002 * 223.27233 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 5.5516 -2.6364 -0.0009 12 7 6.0399 -4.0176 -0.0002 13 6 7.3650 -4.2639 -0.0006 14 8 8.1531 -3.3420 -0.0019 15 6 7.8674 -5.6847 0.0008 16 1 7.6401 -6.2165 0.9246 17 6 7.5132 -6.4720 -1.2749 18 6 8.9602 -6.9972 -1.2169 19 8 9.2360 -5.8198 -0.4318 20 1 -0.4851 0.8400 0.0004 21 1 3.8751 -0.6803 0.8889 22 1 3.8745 -0.6799 -0.8911 23 1 3.6579 -3.1505 -0.8907 24 1 3.6585 -3.1501 0.8893 25 1 5.9149 -2.1225 0.8890 26 1 5.9148 -2.1226 -0.8910 27 1 5.4096 -4.7549 0.0005 28 1 6.7586 -7.2433 -1.1208 29 1 7.3085 -5.8405 -2.1394 30 1 9.0687 -7.9308 -0.6649 31 1 9.4635 -7.0105 -2.1837 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379353619.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:11 Heat of formation + Delta-G solvation = -87.580586 kcal Electronic energy + Delta-G solvation = -13695.554264 eV Core-core repulsion = 11169.891802 eV Total energy + Delta-G solvation = -2525.662461 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.82112 -39.86961 -37.00644 -35.18609 -33.39431 -30.96089 -29.43779 -27.86099 -24.64529 -22.59159 -22.21827 -21.04600 -19.05662 -18.55690 -17.64351 -17.33914 -16.58761 -16.42395 -16.18180 -15.56183 -15.30093 -14.78077 -14.14700 -13.81637 -13.68355 -13.48024 -12.85439 -12.74937 -12.67902 -11.95653 -11.80614 -11.67012 -11.60171 -11.33404 -11.11048 -10.76282 -10.56182 -10.17424 -8.29536 -6.33248 1.36598 1.38548 1.46339 1.49911 1.88145 2.36106 2.78952 3.06450 3.21905 3.64192 3.98047 4.08448 4.18438 4.31336 4.41898 4.48644 4.73877 4.86710 4.87786 4.91364 5.01782 5.04550 5.16235 5.33775 5.48479 5.55258 5.64916 6.27219 6.49271 6.74933 7.15600 7.31835 8.86801 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.072228 B = 0.004949 C = 0.004721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 387.565625 B = 5656.084627 C = 5929.963144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.945 3.055 4 H -0.268 1.268 5 H -0.284 1.284 6 H -0.249 1.249 7 C -0.530 4.530 8 H 0.040 0.960 9 C -0.014 4.014 10 C -0.099 4.099 11 C 0.125 3.875 12 N -0.705 5.705 13 C 0.505 3.495 14 O -0.585 6.585 15 C 0.043 3.957 16 H 0.153 0.847 17 C -0.162 4.162 18 C 0.030 3.970 19 O -0.399 6.399 20 H 0.266 0.734 21 H 0.020 0.980 22 H 0.019 0.981 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.419 0.581 28 H 0.121 0.879 29 H 0.089 0.911 30 H 0.114 0.886 31 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.329 -15.487 -1.609 21.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.769 3.231 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.173 1.173 7 C -0.568 4.568 8 H 0.058 0.942 9 C -0.052 4.052 10 C -0.137 4.137 11 C 0.001 3.999 12 N -0.359 5.359 13 C 0.292 3.708 14 O -0.465 6.465 15 C -0.018 4.018 16 H 0.170 0.830 17 C -0.199 4.199 18 C -0.046 4.046 19 O -0.318 6.318 20 H 0.075 0.925 21 H 0.038 0.962 22 H 0.037 0.963 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.256 0.744 28 H 0.140 0.860 29 H 0.108 0.892 30 H 0.132 0.868 31 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 14.980 -14.580 -1.566 20.963 hybrid contribution -0.552 0.730 -0.010 0.915 sum 14.428 -13.850 -1.576 20.062 Atomic orbital electron populations 1.70049 1.08169 1.28122 1.52718 1.25947 0.95552 1.03319 0.94256 0.85730 0.79495 0.78719 0.79160 1.19280 1.21017 1.17313 1.21457 0.91817 0.93317 1.50178 0.94176 1.19485 0.94166 0.94799 0.96763 1.21479 0.91564 0.98114 1.02507 1.21341 0.94670 0.82533 1.01337 1.45824 1.06433 1.09580 1.74028 1.21097 0.82500 0.91779 0.75426 1.90705 1.56766 1.47973 1.51077 1.23568 0.83971 0.91696 1.02588 0.82966 1.24560 1.00031 0.99819 0.95527 1.24230 0.94003 0.89325 0.97002 1.89847 1.26990 1.46056 1.68884 0.92502 0.96192 0.96308 0.91339 0.91353 0.92534 0.92554 0.74361 0.86042 0.89231 0.86771 0.88015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.93 13.96 21.44 0.30 -58.63 16 2 C 0.01 0.36 5.47 84.65 0.46 0.82 16 3 Si 0.95 44.26 27.47 68.60 1.88 46.15 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 7 C -0.53 -29.70 9.66 25.60 0.25 -29.45 16 8 H 0.04 2.43 7.99 -2.91 -0.02 2.41 16 9 C -0.01 -0.64 4.04 29.85 0.12 -0.52 16 10 C -0.10 -3.44 5.27 30.60 0.16 -3.28 16 11 C 0.12 3.92 5.67 86.38 0.49 4.41 16 12 N -0.71 -17.36 5.56 -463.06 -2.57 -19.94 16 13 C 0.51 14.25 7.38 87.66 0.65 14.90 16 14 O -0.59 -23.20 16.82 11.64 0.20 -23.01 16 15 C 0.04 0.81 4.91 30.14 0.15 0.96 16 16 H 0.15 1.84 8.14 -2.39 -0.02 1.83 16 17 C -0.16 -1.95 7.92 31.30 0.25 -1.70 16 18 C 0.03 0.38 9.21 72.28 0.67 1.05 16 19 O -0.40 -9.80 12.04 -134.29 -1.62 -11.42 16 20 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 21 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 22 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 23 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 24 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 25 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 27 H 0.42 7.20 8.47 -92.71 -0.79 6.42 16 28 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.09 1.30 8.09 -2.39 -0.02 1.29 16 30 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -76.40 268.91 1.66 -74.75 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: 0.28 Total: 4.91 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 3.19 Total: -12.81 kcal Atomic # 7 Polarization: -76.29 SS G_CDS: -2.27 Total: -78.56 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -1.42 Total: -34.43 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.15 kcal Total: -76.40 1.66 -74.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379353619.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.833 kcal (2) G-P(sol) polarization free energy of solvation -76.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds