Wall clock time and date at job start Sun Mar 29 2020 22:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99875 * 2 1 4 4 H 1.48505 * 109.46968 * 239.99815 * 3 2 1 5 5 H 1.48502 * 109.47265 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47456 * 119.99883 * 3 2 1 7 7 C 1.37871 * 120.00390 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00800 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00055 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47414 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46885 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.46740 * 180.02562 * 11 10 9 13 13 C 1.34781 * 119.99911 * 179.97438 * 12 11 10 14 14 O 1.21276 * 119.99754 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99998 * 179.97438 * 13 12 11 16 16 H 1.08998 * 113.03348 * 66.97628 * 15 13 12 17 17 C 1.54038 * 113.86531 * 294.99977 * 15 13 12 18 18 C 1.54037 * 85.95734 * 268.37113 * 17 15 13 19 19 O 1.44175 * 113.86624 * 199.12924 * 15 13 12 20 20 H 0.96996 * 120.00134 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46658 * 59.99785 * 9 7 2 22 22 H 1.08996 * 109.46768 * 300.00207 * 9 7 2 23 23 H 1.09001 * 109.46961 * 59.99881 * 10 9 7 24 24 H 1.09001 * 109.47026 * 300.00107 * 10 9 7 25 25 H 1.08993 * 109.47526 * 59.99714 * 11 10 9 26 26 H 1.09001 * 109.47146 * 299.99752 * 11 10 9 27 27 H 0.97006 * 120.00398 * 359.97438 * 12 11 10 28 28 H 1.09002 * 113.81706 * 22.65797 * 17 15 13 29 29 H 1.08996 * 113.81491 * 154.08477 * 17 15 13 30 30 H 1.08996 * 113.86647 * 91.62718 * 18 17 15 31 31 H 1.09000 * 113.86636 * 223.33666 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 -0.0001 12 7 2.4324 -6.1005 0.0005 13 6 1.9832 -7.3713 0.0006 14 8 0.7908 -7.5929 0.0007 15 6 2.9625 -8.5167 0.0007 16 1 3.5379 -8.5858 0.9238 17 6 3.8199 -8.6036 -1.2760 18 6 2.7217 -9.5373 -1.8190 19 8 2.3948 -9.7696 -0.4313 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 2.8720 -3.6043 0.8905 24 1 2.8720 -3.6043 -0.8895 25 1 0.8540 -5.0446 -0.8902 26 1 0.8534 -5.0451 0.8897 27 1 3.3861 -5.9233 0.0008 28 1 3.9023 -7.6603 -1.8160 29 1 4.7816 -9.0947 -1.1278 30 1 1.9397 -9.0212 -2.3759 31 1 3.1063 -10.4165 -2.3360 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379353620.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:13 Heat of formation + Delta-G solvation = -65.204697 kcal Electronic energy + Delta-G solvation = -13730.449134 eV Core-core repulsion = 11205.756964 eV Total energy + Delta-G solvation = -2524.692170 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.03359 -38.54536 -35.43250 -33.37643 -31.43606 -29.94153 -27.88597 -26.26990 -23.37220 -21.96129 -20.71183 -19.52579 -17.43661 -16.93489 -16.47876 -16.08585 -15.63512 -15.06772 -14.64344 -14.40742 -13.71155 -13.33217 -12.74528 -12.30578 -11.88320 -11.83589 -11.45651 -11.10808 -10.90394 -10.77845 -10.69349 -10.59624 -9.90478 -9.67914 -9.28714 -9.12573 -8.86749 -8.39329 -6.03878 -4.07436 2.57380 3.05455 3.30403 3.35466 3.37097 3.49116 3.95437 4.42154 4.61483 4.68429 4.98295 5.13264 5.29143 5.31831 5.60535 5.60998 5.67396 5.72764 5.80678 6.10886 6.39906 6.54721 6.77077 6.95582 7.59753 7.60451 7.72644 7.94275 8.27468 8.35528 8.98967 9.56938 11.07375 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.077192 B = 0.004707 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.646872 B = 5946.567344 C = 6147.002420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.116 3.884 12 N -0.720 5.720 13 C 0.499 3.501 14 O -0.527 6.527 15 C 0.044 3.956 16 H 0.129 0.871 17 C -0.175 4.175 18 C 0.031 3.969 19 O -0.352 6.352 20 H 0.262 0.738 21 H 0.019 0.981 22 H 0.019 0.981 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.399 0.601 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.084 0.916 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.494 -14.776 -2.351 17.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C -0.007 4.007 12 N -0.373 5.373 13 C 0.283 3.717 14 O -0.403 6.403 15 C -0.018 4.018 16 H 0.147 0.853 17 C -0.213 4.213 18 C -0.046 4.046 19 O -0.269 6.269 20 H 0.072 0.928 21 H 0.037 0.963 22 H 0.038 0.962 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.233 0.767 28 H 0.100 0.900 29 H 0.123 0.877 30 H 0.102 0.898 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.312 -15.041 -2.217 17.327 hybrid contribution 0.966 1.212 -0.048 1.551 sum 9.278 -13.829 -2.265 16.806 Atomic orbital electron populations 1.69951 1.06079 1.26855 1.50369 1.25024 0.94851 0.99306 0.95218 0.86637 0.79561 0.83074 0.78585 1.20247 1.21249 1.20230 1.21157 0.92943 0.90932 1.51209 0.92688 1.19033 0.93854 0.90837 0.97700 1.21893 0.99782 0.93238 1.00922 1.21693 0.91866 0.84973 1.02154 1.46162 1.10955 1.05609 1.74526 1.20619 0.89680 0.84177 0.77264 1.90738 1.16471 1.84617 1.48492 1.23210 0.92353 0.85253 1.01012 0.85340 1.24620 0.99862 1.01853 0.94945 1.24017 0.95741 0.99275 0.85536 1.89842 1.83877 1.32857 1.20331 0.92830 0.96269 0.96232 0.92637 0.92687 0.91667 0.91616 0.76700 0.89985 0.87682 0.89789 0.88560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 8 H 0.05 1.45 7.74 -52.48 -0.41 1.05 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.29 5.27 -26.73 -0.14 -2.43 16 11 C 0.12 1.99 5.67 -4.04 -0.02 1.97 16 12 N -0.72 -9.87 5.56 -60.30 -0.33 -10.21 16 13 C 0.50 7.45 7.10 -10.98 -0.08 7.37 16 14 O -0.53 -10.47 16.82 -9.80 -0.16 -10.63 16 15 C 0.04 0.48 5.12 -27.40 -0.14 0.34 16 16 H 0.13 1.09 8.14 -51.93 -0.42 0.67 16 17 C -0.18 -1.39 7.93 -25.65 -0.20 -1.60 16 18 C 0.03 0.30 8.98 37.64 0.34 0.64 16 19 O -0.35 -4.72 12.06 -50.59 -0.61 -5.33 16 20 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 21 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.40 4.17 8.47 -40.82 -0.35 3.82 16 28 H 0.08 0.61 8.09 -51.93 -0.42 0.19 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 272.23 15.07 4.10 4.10 Total: -1.00 -33.51 272.23 -6.62 -40.14 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -4.53 Total: -1.90 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -0.80 Total: -6.50 kcal Atomic # 7 Polarization: -36.54 SS G_CDS: 0.40 Total: -36.13 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.77 Total: -15.96 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -33.51 -6.62 -40.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379353620.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.066 kcal (2) G-P(sol) polarization free energy of solvation -33.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds