Wall clock time and date at job start Sun Mar 29 2020 22:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99875 * 2 1 4 4 H 1.48505 * 109.46968 * 239.99815 * 3 2 1 5 5 H 1.48502 * 109.47265 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47456 * 119.99883 * 3 2 1 7 7 C 1.37871 * 120.00390 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00800 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00055 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47414 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46885 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.46740 * 180.02562 * 11 10 9 13 13 C 1.34781 * 119.99911 * 179.97438 * 12 11 10 14 14 O 1.21276 * 119.99754 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99998 * 179.97438 * 13 12 11 16 16 H 1.08998 * 113.03348 * 66.97628 * 15 13 12 17 17 C 1.54038 * 113.86531 * 294.99977 * 15 13 12 18 18 C 1.54037 * 85.95734 * 268.37113 * 17 15 13 19 19 O 1.44175 * 113.86624 * 199.12924 * 15 13 12 20 20 H 0.96996 * 120.00134 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46658 * 59.99785 * 9 7 2 22 22 H 1.08996 * 109.46768 * 300.00207 * 9 7 2 23 23 H 1.09001 * 109.46961 * 59.99881 * 10 9 7 24 24 H 1.09001 * 109.47026 * 300.00107 * 10 9 7 25 25 H 1.08993 * 109.47526 * 59.99714 * 11 10 9 26 26 H 1.09001 * 109.47146 * 299.99752 * 11 10 9 27 27 H 0.97006 * 120.00398 * 359.97438 * 12 11 10 28 28 H 1.09002 * 113.81706 * 22.65797 * 17 15 13 29 29 H 1.08996 * 113.81491 * 154.08477 * 17 15 13 30 30 H 1.08996 * 113.86647 * 91.62718 * 18 17 15 31 31 H 1.09000 * 113.86636 * 223.33666 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 -0.0001 12 7 2.4324 -6.1005 0.0005 13 6 1.9832 -7.3713 0.0006 14 8 0.7908 -7.5929 0.0007 15 6 2.9625 -8.5167 0.0007 16 1 3.5379 -8.5858 0.9238 17 6 3.8199 -8.6036 -1.2760 18 6 2.7217 -9.5373 -1.8190 19 8 2.3948 -9.7696 -0.4313 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8897 22 1 0.6241 -2.5567 0.8903 23 1 2.8720 -3.6043 0.8905 24 1 2.8720 -3.6043 -0.8895 25 1 0.8540 -5.0446 -0.8902 26 1 0.8534 -5.0451 0.8897 27 1 3.3861 -5.9233 0.0008 28 1 3.9023 -7.6603 -1.8160 29 1 4.7816 -9.0947 -1.1278 30 1 1.9397 -9.0212 -2.3759 31 1 3.1063 -10.4165 -2.3360 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379353620.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:13 Heat of formation + Delta-G solvation = -89.784692 kcal Electronic energy + Delta-G solvation = -13731.515003 eV Core-core repulsion = 11205.756964 eV Total energy + Delta-G solvation = -2525.758039 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.98035 -39.71586 -36.97283 -35.23214 -33.16611 -30.89369 -29.13360 -27.72280 -25.02868 -23.05736 -22.33506 -20.67992 -18.61541 -18.32573 -17.73067 -17.31939 -16.69110 -16.49977 -16.40138 -15.69383 -15.15579 -14.50454 -14.20660 -13.78407 -13.55694 -13.37024 -12.71714 -12.56101 -12.42303 -12.23216 -11.98725 -11.68525 -11.65401 -11.43714 -11.22572 -10.54484 -10.42290 -10.18601 -8.18954 -6.30833 1.42738 1.43212 1.45690 1.53556 1.96483 2.42936 2.64963 3.15001 3.21639 3.66392 4.00149 4.14577 4.19045 4.25632 4.45858 4.53240 4.70940 4.87718 4.92483 4.94566 4.98788 5.06404 5.16832 5.37368 5.52018 5.70154 5.84188 6.21856 6.48995 6.86797 7.15342 7.39139 8.93034 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.077192 B = 0.004707 C = 0.004554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 362.646872 B = 5946.567344 C = 6147.002420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.541 4.541 8 H 0.069 0.931 9 C 0.021 3.979 10 C -0.100 4.100 11 C 0.128 3.872 12 N -0.703 5.703 13 C 0.495 3.505 14 O -0.586 6.586 15 C 0.040 3.960 16 H 0.162 0.838 17 C -0.150 4.150 18 C 0.018 3.982 19 O -0.386 6.386 20 H 0.263 0.737 21 H -0.009 1.009 22 H -0.009 1.009 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.420 0.580 28 H 0.090 0.910 29 H 0.140 0.860 30 H 0.065 0.935 31 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.635 -14.990 -2.555 19.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.087 0.913 9 C -0.016 4.016 10 C -0.138 4.138 11 C 0.004 3.996 12 N -0.356 5.356 13 C 0.282 3.718 14 O -0.466 6.466 15 C -0.021 4.021 16 H 0.179 0.821 17 C -0.187 4.187 18 C -0.058 4.058 19 O -0.303 6.303 20 H 0.072 0.928 21 H 0.010 0.990 22 H 0.009 0.991 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.257 0.743 28 H 0.108 0.892 29 H 0.158 0.842 30 H 0.083 0.917 31 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 11.517 -15.263 -2.426 19.274 hybrid contribution -0.059 1.233 0.006 1.235 sum 11.458 -14.030 -2.420 18.275 Atomic orbital electron populations 1.70108 1.08027 1.27867 1.51670 1.26030 0.95710 1.03607 0.94749 0.85461 0.78166 0.77862 0.79311 1.18932 1.21316 1.18978 1.21658 0.93813 0.91921 1.50536 0.91326 1.18963 0.94523 0.93130 0.95011 1.21593 0.98381 0.91394 1.02435 1.21272 0.92063 0.85654 1.00644 1.45876 1.11447 1.04522 1.73790 1.21478 0.89673 0.85131 0.75524 1.90713 1.19285 1.85452 1.51140 1.23374 0.91682 0.82827 1.04233 0.82116 1.24564 1.00068 1.01962 0.92100 1.24257 0.96184 1.01103 0.84283 1.89819 1.84461 1.33702 1.22326 0.92838 0.99039 0.99100 0.91076 0.90963 0.93278 0.93402 0.74257 0.89184 0.84165 0.91683 0.85818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.04 13.29 21.44 0.28 -56.76 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 3 Si 0.97 43.20 29.54 68.60 2.03 45.23 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 5 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 7 C -0.54 -29.75 9.11 25.60 0.23 -29.51 16 8 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.02 1.10 4.97 29.85 0.15 1.25 16 10 C -0.10 -3.71 5.27 30.59 0.16 -3.55 16 11 C 0.13 4.42 5.67 86.38 0.49 4.91 16 12 N -0.70 -18.21 5.56 -463.07 -2.57 -20.79 16 13 C 0.50 14.42 7.10 87.66 0.62 15.04 16 14 O -0.59 -23.90 16.82 11.67 0.20 -23.70 16 15 C 0.04 0.80 5.12 30.16 0.15 0.95 16 16 H 0.16 2.13 8.14 -2.39 -0.02 2.11 16 17 C -0.15 -1.83 7.93 31.30 0.25 -1.58 16 18 C 0.02 0.32 8.98 72.30 0.65 0.97 16 19 O -0.39 -9.80 12.06 -134.30 -1.62 -11.42 16 20 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 21 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 22 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 23 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 24 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 25 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.42 7.44 8.47 -92.70 -0.79 6.65 16 28 H 0.09 0.99 8.09 -2.39 -0.02 0.97 16 29 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -75.05 272.23 1.81 -73.24 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 0.33 Total: 5.44 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 3.17 Total: -11.24 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -2.29 Total: -77.54 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -1.42 Total: -35.12 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -75.05 1.81 -73.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379353620.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.549 kcal (2) G-P(sol) polarization free energy of solvation -75.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds