Wall clock time and date at job start Sun Mar 29 2020 21:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34226 * 116.99570 * 2 1 4 4 O 1.20832 * 120.00301 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00322 * 180.02562 * 3 2 1 6 6 H 1.09003 * 115.55935 * 307.65277 * 5 3 2 7 7 C 1.52996 * 117.50321 * 161.96446 * 5 3 2 8 8 C 1.52994 * 117.50318 * 93.33826 * 5 3 2 9 9 H 1.09001 * 117.52389 * 214.97865 * 8 5 3 10 10 C 1.50708 * 117.49759 * 0.02562 * 8 5 3 11 11 O 1.21284 * 120.00022 * 311.67184 * 10 8 5 12 12 N 1.34775 * 119.99593 * 131.38823 * 10 8 5 13 13 C 1.37104 * 119.99912 * 179.97438 * 12 10 8 14 14 H 1.07996 * 119.99433 * 0.02562 * 13 12 10 15 15 C 1.38943 * 120.00042 * 180.02562 * 13 12 10 16 16 N 1.31411 * 120.00084 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99836 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47103 * 89.99791 * 17 15 13 19 19 H 1.48502 * 109.46809 * 209.99621 * 17 15 13 20 20 H 1.48496 * 109.46935 * 329.99692 * 17 15 13 21 21 H 1.09004 * 109.46496 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47444 * 299.99623 * 1 2 3 23 23 H 1.08995 * 109.47097 * 60.00555 * 1 2 3 24 24 H 1.09003 * 117.50104 * 145.02170 * 7 5 3 25 25 H 1.08998 * 117.50004 * 359.97438 * 7 5 3 26 26 H 0.97000 * 120.00223 * 0.02562 * 12 10 8 27 27 H 0.97003 * 119.99589 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2751 -0.0006 6 1 4.0677 0.6997 0.7776 7 6 4.2039 2.6008 -0.4207 8 6 4.2671 1.3913 -1.3556 9 1 5.2297 0.8927 -1.4692 10 6 3.3996 1.4186 -2.5876 11 8 2.5214 0.5942 -2.7293 12 7 3.5960 2.3627 -3.5292 13 6 2.8072 2.3872 -4.6504 14 1 2.0282 1.6503 -4.7786 15 6 3.0100 3.3601 -5.6213 16 7 3.9583 4.2565 -5.4654 17 14 1.9347 3.3940 -7.1485 18 1 0.7448 4.2462 -6.8973 19 1 2.7096 3.9491 -8.2872 20 1 1.4951 2.0137 -7.4750 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 5.1250 2.8977 0.0810 25 1 3.5350 3.4158 -0.6971 26 1 4.2960 3.0243 -3.4141 27 1 4.0996 4.9359 -6.1431 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379364686.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:24 Heat of formation + Delta-G solvation = -98.178554 kcal Electronic energy + Delta-G solvation = -14218.170504 eV Core-core repulsion = 11556.215385 eV Total energy + Delta-G solvation = -2661.955118 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.20841 -38.39753 -36.30694 -35.28128 -33.91809 -31.18437 -27.80933 -25.72276 -24.03420 -22.96214 -20.20777 -19.04806 -18.00429 -17.23807 -16.42894 -15.95182 -15.25997 -14.91765 -14.43547 -13.95373 -13.29184 -12.84102 -12.72049 -12.34324 -11.80808 -11.60608 -11.57025 -11.10505 -10.46315 -10.40961 -10.35960 -10.32310 -10.17799 -9.94774 -9.53606 -8.44947 -8.00030 -6.44683 -3.85260 2.61796 3.06087 3.16615 3.25724 3.31599 3.77949 3.97941 4.16579 4.72317 4.99371 5.04909 5.21836 5.31757 5.42027 5.51101 5.56497 5.83090 5.89756 6.03996 6.30692 6.37719 6.85409 7.52641 8.01918 8.24150 8.56466 9.13562 9.50286 10.00960 10.72652 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.037809 B = 0.009005 C = 0.007969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.392210 B = 3108.546606 C = 3512.590697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.344 6.344 3 C 0.506 3.494 4 O -0.511 6.511 5 C -0.147 4.147 6 H 0.138 0.862 7 C -0.137 4.137 8 C -0.136 4.136 9 H 0.131 0.869 10 C 0.455 3.545 11 O -0.585 6.585 12 N -0.548 5.548 13 C -0.302 4.302 14 H 0.103 0.897 15 C 0.025 3.975 16 N -0.897 5.897 17 Si 0.931 3.069 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.269 1.269 21 H 0.095 0.905 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.395 0.605 27 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.640 -3.842 9.360 10.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.260 6.260 3 C 0.349 3.651 4 O -0.399 6.399 5 C -0.166 4.166 6 H 0.156 0.844 7 C -0.174 4.174 8 C -0.158 4.158 9 H 0.149 0.851 10 C 0.241 3.759 11 O -0.471 6.471 12 N -0.183 5.183 13 C -0.431 4.431 14 H 0.121 0.879 15 C -0.177 4.177 16 N -0.538 5.538 17 Si 0.758 3.242 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.194 1.194 21 H 0.114 0.886 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.130 0.870 25 H 0.130 0.870 26 H 0.228 0.772 27 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.127 -3.939 9.109 9.925 hybrid contribution -0.194 0.465 -0.703 0.865 sum -0.320 -3.473 8.406 9.100 Atomic orbital electron populations 1.23153 0.76958 1.03058 1.02137 1.86451 1.22798 1.33033 1.83696 1.22287 0.90223 0.81327 0.71233 1.90630 1.66811 1.36584 1.45905 1.21634 0.88892 1.04942 1.01132 0.84431 1.23178 1.02247 0.91250 1.00767 1.22387 1.00873 1.02715 0.89807 0.85102 1.18939 0.87185 0.85043 0.84782 1.90558 1.35783 1.41510 1.79220 1.41813 1.32019 1.26651 1.17768 1.19729 1.13811 1.13834 0.95764 0.87903 1.25285 0.97303 0.95497 0.99634 1.69618 1.31427 1.16583 1.36135 0.85841 0.79358 0.78771 0.80231 1.20315 1.20807 1.19358 0.88617 0.92672 0.91705 0.86977 0.87023 0.77155 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.56 101.05 1.07 1.70 15 2 O -0.34 -6.51 10.48 -39.37 -0.41 -6.92 15 3 C 0.51 10.09 5.87 36.01 0.21 10.30 15 4 O -0.51 -11.46 16.17 -18.75 -0.30 -11.76 15 5 C -0.15 -2.40 6.30 -91.78 -0.58 -2.97 15 6 H 0.14 1.67 8.14 -51.93 -0.42 1.25 15 7 C -0.14 -2.12 9.74 -26.73 -0.26 -2.38 15 8 C -0.14 -2.45 6.13 -91.77 -0.56 -3.02 15 9 H 0.13 1.93 8.14 -51.93 -0.42 1.51 15 10 C 0.46 11.15 6.83 -10.98 -0.08 11.07 15 11 O -0.59 -16.36 15.36 5.55 0.09 -16.27 15 12 N -0.55 -14.26 5.29 -10.96 -0.06 -14.32 15 13 C -0.30 -8.59 9.68 -14.93 -0.14 -8.74 15 14 H 0.10 3.07 7.16 -52.49 -0.38 2.70 15 15 C 0.03 0.68 5.50 -17.47 -0.10 0.58 15 16 N -0.90 -24.56 13.05 55.50 0.72 -23.84 15 17 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 15 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 20 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15 21 H 0.10 1.14 8.14 -51.93 -0.42 0.71 15 22 H 0.05 0.75 8.13 -51.93 -0.42 0.33 15 23 H 0.06 1.12 8.13 -51.93 -0.42 0.70 15 24 H 0.11 1.27 8.14 -51.93 -0.42 0.84 15 25 H 0.11 2.02 7.79 -51.93 -0.40 1.61 15 26 H 0.39 9.80 7.90 -40.82 -0.32 9.47 15 27 H 0.27 7.04 8.31 -40.82 -0.34 6.70 15 LS Contribution 251.81 15.07 3.79 3.79 Total: -1.00 -33.77 251.81 -4.40 -38.18 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -2.77 Total: 8.35 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -0.44 Total: 6.55 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.67 Total: -38.16 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -0.63 Total: -34.95 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -33.77 -4.40 -38.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379364686.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.002 kcal (2) G-P(sol) polarization free energy of solvation -33.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds