Wall clock time and date at job start Sun Mar 29 2020 21:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34226 * 116.99570 * 2 1 4 4 O 1.20832 * 120.00301 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00322 * 180.02562 * 3 2 1 6 6 H 1.09003 * 115.55935 * 307.65277 * 5 3 2 7 7 C 1.52996 * 117.50321 * 161.96446 * 5 3 2 8 8 C 1.52994 * 117.50318 * 93.33826 * 5 3 2 9 9 H 1.09001 * 117.52389 * 214.97865 * 8 5 3 10 10 C 1.50708 * 117.49759 * 0.02562 * 8 5 3 11 11 O 1.21284 * 120.00022 * 311.67184 * 10 8 5 12 12 N 1.34775 * 119.99593 * 131.38823 * 10 8 5 13 13 C 1.37104 * 119.99912 * 179.97438 * 12 10 8 14 14 H 1.07996 * 119.99433 * 0.02562 * 13 12 10 15 15 C 1.38943 * 120.00042 * 180.02562 * 13 12 10 16 16 N 1.31411 * 120.00084 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99836 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47103 * 89.99791 * 17 15 13 19 19 H 1.48502 * 109.46809 * 209.99621 * 17 15 13 20 20 H 1.48496 * 109.46935 * 329.99692 * 17 15 13 21 21 H 1.09004 * 109.46496 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47444 * 299.99623 * 1 2 3 23 23 H 1.08995 * 109.47097 * 60.00555 * 1 2 3 24 24 H 1.09003 * 117.50104 * 145.02170 * 7 5 3 25 25 H 1.08998 * 117.50004 * 359.97438 * 7 5 3 26 26 H 0.97000 * 120.00223 * 0.02562 * 12 10 8 27 27 H 0.97003 * 119.99589 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2751 -0.0006 6 1 4.0677 0.6997 0.7776 7 6 4.2039 2.6008 -0.4207 8 6 4.2671 1.3913 -1.3556 9 1 5.2297 0.8927 -1.4692 10 6 3.3996 1.4186 -2.5876 11 8 2.5214 0.5942 -2.7293 12 7 3.5960 2.3627 -3.5292 13 6 2.8072 2.3872 -4.6504 14 1 2.0282 1.6503 -4.7786 15 6 3.0100 3.3601 -5.6213 16 7 3.9583 4.2565 -5.4654 17 14 1.9347 3.3940 -7.1485 18 1 0.7448 4.2462 -6.8973 19 1 2.7096 3.9491 -8.2872 20 1 1.4951 2.0137 -7.4750 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 5.1250 2.8977 0.0810 25 1 3.5350 3.4158 -0.6971 26 1 4.2960 3.0243 -3.4141 27 1 4.0996 4.9359 -6.1431 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379364686.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:24 Heat of formation + Delta-G solvation = -122.681568 kcal Electronic energy + Delta-G solvation = -14219.233034 eV Core-core repulsion = 11556.215385 eV Total energy + Delta-G solvation = -2663.017649 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.72600 -40.17911 -37.84987 -36.83565 -35.98075 -33.26168 -29.15022 -27.64112 -25.52018 -24.54005 -21.66077 -20.80201 -19.98925 -18.83537 -17.98451 -17.46455 -17.10772 -16.38630 -16.22041 -15.81890 -14.89351 -14.66300 -14.17920 -13.98896 -13.58383 -13.14542 -12.99294 -12.89180 -12.49589 -12.17296 -11.77985 -11.76966 -11.64962 -11.52772 -11.43403 -10.40797 -10.07567 -8.52360 -6.01703 1.10482 1.33675 1.38126 1.51150 1.73793 1.94378 2.25863 2.66363 3.07120 3.17359 3.70112 3.71714 3.90153 4.16730 4.25995 4.29856 4.49989 4.61313 4.80390 4.84017 5.09210 5.35162 5.41689 5.92625 6.51690 6.74192 7.04931 7.48208 8.03092 8.64846 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.037809 B = 0.009005 C = 0.007969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.392210 B = 3108.546606 C = 3512.590697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.354 6.354 3 C 0.491 3.509 4 O -0.549 6.549 5 C -0.142 4.142 6 H 0.191 0.809 7 C -0.117 4.117 8 C -0.149 4.149 9 H 0.173 0.827 10 C 0.448 3.552 11 O -0.628 6.628 12 N -0.558 5.558 13 C -0.341 4.341 14 H 0.076 0.924 15 C -0.009 4.009 16 N -0.914 5.914 17 Si 0.993 3.007 18 H -0.273 1.273 19 H -0.265 1.265 20 H -0.272 1.272 21 H 0.133 0.867 22 H 0.072 0.928 23 H 0.035 0.965 24 H 0.168 0.832 25 H 0.078 0.922 26 H 0.399 0.601 27 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.842 -3.984 10.191 11.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.269 6.269 3 C 0.337 3.663 4 O -0.440 6.440 5 C -0.160 4.160 6 H 0.208 0.792 7 C -0.154 4.154 8 C -0.170 4.170 9 H 0.191 0.809 10 C 0.235 3.765 11 O -0.516 6.516 12 N -0.194 5.194 13 C -0.470 4.470 14 H 0.094 0.906 15 C -0.209 4.209 16 N -0.554 5.554 17 Si 0.816 3.184 18 H -0.199 1.199 19 H -0.189 1.189 20 H -0.197 1.197 21 H 0.151 0.849 22 H 0.091 0.909 23 H 0.054 0.946 24 H 0.186 0.814 25 H 0.097 0.903 26 H 0.233 0.767 27 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.099 -4.078 9.953 10.813 hybrid contribution -0.625 0.477 -0.923 1.213 sum 0.474 -3.602 9.030 9.734 Atomic orbital electron populations 1.23421 0.75540 1.05397 1.01558 1.86444 1.24436 1.32781 1.83235 1.23197 0.91998 0.81015 0.70137 1.90606 1.68031 1.37688 1.47709 1.22042 0.86630 1.06252 1.01121 0.79170 1.23333 1.03511 0.89530 0.99046 1.22332 1.01401 1.06026 0.87248 0.80950 1.20108 0.86960 0.83374 0.86023 1.90520 1.37808 1.42793 1.80516 1.41884 1.32109 1.27461 1.17903 1.19674 1.14820 1.14651 0.97895 0.90610 1.26066 0.98344 0.94587 1.01933 1.69667 1.31963 1.16676 1.37118 0.84933 0.77874 0.78563 0.76983 1.19852 1.18919 1.19684 0.84899 0.90901 0.94620 0.81444 0.90343 0.76698 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.05 10.56 113.37 1.20 2.24 15 2 O -0.35 -13.19 10.48 -51.26 -0.54 -13.72 15 3 C 0.49 19.31 5.87 71.24 0.42 19.73 15 4 O -0.55 -25.03 16.17 21.95 0.35 -24.67 15 5 C -0.14 -4.21 6.30 -11.54 -0.07 -4.28 15 6 H 0.19 3.60 8.14 -2.39 -0.02 3.58 15 7 C -0.12 -3.28 9.74 30.59 0.30 -2.98 15 8 C -0.15 -5.02 6.13 -11.54 -0.07 -5.09 15 9 H 0.17 4.37 8.14 -2.39 -0.02 4.35 15 10 C 0.45 22.15 6.83 87.66 0.60 22.75 15 11 O -0.63 -36.14 15.36 -3.04 -0.05 -36.18 15 12 N -0.56 -29.70 5.29 -306.99 -1.62 -31.32 15 13 C -0.34 -20.02 9.68 84.04 0.81 -19.21 15 14 H 0.08 4.76 7.16 -2.91 -0.02 4.74 15 15 C -0.01 -0.48 5.50 84.92 0.47 -0.01 15 16 N -0.91 -49.90 13.05 21.66 0.28 -49.62 15 17 Si 0.99 43.73 29.55 68.60 2.03 45.76 15 18 H -0.27 -11.79 7.11 99.48 0.71 -11.08 15 19 H -0.26 -10.85 7.11 99.48 0.71 -10.14 15 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 15 21 H 0.13 2.97 8.14 -2.39 -0.02 2.95 15 22 H 0.07 1.94 8.13 -2.39 -0.02 1.92 15 23 H 0.03 1.28 8.13 -2.39 -0.02 1.26 15 24 H 0.17 2.84 8.14 -2.39 -0.02 2.82 15 25 H 0.08 2.77 7.79 -2.39 -0.02 2.75 15 26 H 0.40 20.04 7.90 -92.71 -0.73 19.31 15 27 H 0.28 14.21 8.31 -92.71 -0.77 13.44 15 Total: -1.00 -76.58 251.81 4.57 -72.01 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.46 Total: 24.60 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 3.65 Total: 13.15 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -1.34 Total: -80.94 kcal Atomic # 8 Polarization: -74.35 SS G_CDS: -0.23 Total: -74.58 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -76.58 4.57 -72.01 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379364686.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.669 kcal (2) G-P(sol) polarization free energy of solvation -76.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds