Wall clock time and date at job start Sun Mar 29 2020 22:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47289 * 2 1 4 4 C 1.53001 * 109.47060 * 239.99951 * 2 1 3 5 5 N 1.46502 * 109.47163 * 59.99821 * 4 2 1 6 6 C 1.34773 * 120.00270 * 179.97438 * 5 4 2 7 7 O 1.21687 * 119.99820 * 0.02562 * 6 5 4 8 8 C 1.46370 * 120.00104 * 180.02562 * 6 5 4 9 9 H 1.08007 * 120.00136 * 353.94117 * 8 6 5 10 10 C 1.40057 * 120.00064 * 173.94594 * 8 6 5 11 11 N 1.30667 * 119.99610 * 6.14654 * 10 8 6 12 12 Si 1.86794 * 119.99902 * 186.15143 * 10 8 6 13 13 H 1.48504 * 109.47459 * 94.98011 * 12 10 8 14 14 H 1.48498 * 109.47077 * 214.97981 * 12 10 8 15 15 H 1.48501 * 109.47434 * 334.98227 * 12 10 8 16 16 C 1.53005 * 109.47424 * 120.00091 * 2 1 3 17 17 C 1.52998 * 117.51892 * 231.27909 * 16 2 1 18 18 C 1.52993 * 117.49929 * 299.91343 * 16 2 1 19 19 H 1.08998 * 109.46590 * 299.99722 * 1 2 3 20 20 H 1.08993 * 109.47137 * 59.99979 * 1 2 3 21 21 H 1.09004 * 109.46696 * 180.02562 * 1 2 3 22 22 H 0.96701 * 114.00377 * 180.02562 * 3 2 1 23 23 H 1.09002 * 109.47597 * 180.02562 * 4 2 1 24 24 H 1.09007 * 109.47182 * 300.00049 * 4 2 1 25 25 H 0.96996 * 119.99537 * 0.02562 * 5 4 2 26 26 H 0.97003 * 119.99472 * 179.97438 * 11 10 8 27 27 H 1.09007 * 115.54776 * 85.58189 * 16 2 1 28 28 H 1.08995 * 117.49903 * 214.96524 * 17 16 2 29 29 H 1.09000 * 117.49850 * 359.97438 * 17 16 2 30 30 H 1.09002 * 117.49933 * 359.97438 * 18 16 2 31 31 H 1.09000 * 117.50509 * 144.97316 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.5516 -0.0307 -2.4454 6 6 1.8776 -0.4908 -3.6695 7 8 2.5772 -1.4802 -3.7812 8 6 1.3901 0.1995 -4.8646 9 1 0.6909 1.0172 -4.7686 10 6 1.8301 -0.2003 -6.1328 11 7 2.5797 -1.2631 -6.2591 12 14 1.3453 0.7858 -7.6433 13 1 2.4207 1.7577 -7.9662 14 1 1.1479 -0.1339 -8.7924 15 1 0.0819 1.5176 -7.3723 16 6 2.0401 -0.7213 1.2492 17 6 3.0759 0.0038 2.1107 18 6 1.6375 -0.1484 2.6096 19 1 -0.3632 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 2.9703 1.4236 -0.0004 23 1 3.1300 -0.7217 -1.2491 24 1 1.6766 -1.7490 -1.2492 25 1 0.9942 0.7581 -2.3564 26 1 2.8842 -1.5402 -7.1374 27 1 2.1254 -1.8047 1.1646 28 1 3.8426 -0.6026 2.5930 29 1 3.3946 0.9947 1.7873 30 1 1.0097 0.7426 2.6146 31 1 1.4576 -0.8548 3.4200 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379391105.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:16 Heat of formation + Delta-G solvation = -72.949373 kcal Electronic energy + Delta-G solvation = -14357.220872 eV Core-core repulsion = 11832.192868 eV Total energy + Delta-G solvation = -2525.028004 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.31298 -36.98744 -35.01449 -33.16085 -32.26624 -30.30414 -27.00998 -25.42717 -22.61764 -22.29405 -19.82018 -19.49903 -17.39745 -16.78807 -15.67121 -15.24237 -14.65221 -14.22320 -13.86994 -13.58343 -12.86765 -12.68647 -12.18153 -12.14828 -11.90625 -11.39709 -11.27580 -11.11724 -10.86509 -10.77004 -10.50019 -10.42273 -10.20804 -9.99965 -9.58862 -8.81754 -7.57873 -7.43839 -6.16249 -4.59613 3.16347 3.23363 3.27229 3.75125 4.12271 4.33897 4.60832 4.65215 4.90575 4.92148 5.10686 5.29303 5.47778 5.49772 5.60390 5.79982 5.83654 5.96987 6.08284 6.11255 6.21616 6.35253 6.43001 6.54769 7.47301 7.82481 8.00222 8.16052 8.38254 9.06272 9.59837 10.63630 10.82537 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.064872 B = 0.006573 C = 0.006334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.512359 B = 4258.603967 C = 4419.336617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.151 3.849 3 O -0.555 6.555 4 C 0.114 3.886 5 N -0.760 5.760 6 C 0.554 3.446 7 O -0.584 6.584 8 C -0.546 4.546 9 H 0.068 0.932 10 C 0.088 3.912 11 N -0.770 5.770 12 Si 0.907 3.093 13 H -0.273 1.273 14 H -0.280 1.280 15 H -0.265 1.265 16 C -0.179 4.179 17 C -0.179 4.179 18 C -0.170 4.170 19 H 0.057 0.943 20 H 0.068 0.932 21 H 0.069 0.931 22 H 0.374 0.626 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.384 0.616 26 H 0.267 0.733 27 H 0.110 0.890 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.078 3.516 12.962 13.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.110 3.890 3 O -0.362 6.362 4 C -0.012 4.012 5 N -0.417 5.417 6 C 0.358 3.642 7 O -0.468 6.468 8 C -0.583 4.583 9 H 0.086 0.914 10 C -0.132 4.132 11 N -0.398 5.398 12 Si 0.732 3.268 13 H -0.198 1.198 14 H -0.205 1.205 15 H -0.189 1.189 16 C -0.198 4.198 17 C -0.216 4.216 18 C -0.207 4.207 19 H 0.076 0.924 20 H 0.086 0.914 21 H 0.088 0.912 22 H 0.223 0.777 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.216 0.784 26 H 0.078 0.922 27 H 0.128 0.872 28 H 0.110 0.890 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.097 2.767 12.756 13.220 hybrid contribution 0.204 0.601 -0.651 0.909 sum -1.893 3.368 12.104 12.706 Atomic orbital electron populations 1.21667 0.92280 1.02419 1.02514 1.20942 0.94862 0.81675 0.91561 1.86507 1.26739 1.26099 1.96824 1.21435 0.98319 0.96113 0.85303 1.46045 1.57885 1.32952 1.04787 1.18230 0.80304 0.84091 0.81572 1.90589 1.42010 1.28120 1.86049 1.20894 1.29084 1.18511 0.89792 0.91420 1.25706 0.93482 0.94075 0.99911 1.70035 1.26169 1.19684 1.23946 0.86366 0.79561 0.79961 0.80895 1.19825 1.20490 1.18880 1.23036 1.04499 0.99971 0.92263 1.22947 0.92521 1.02245 1.03838 1.22861 0.98059 1.03145 0.96593 0.92353 0.91352 0.91204 0.77729 0.93308 0.92737 0.78361 0.92189 0.87181 0.88994 0.88312 0.88536 0.89184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 8.51 37.16 0.32 -1.53 16 2 C 0.15 2.23 0.86 -90.62 -0.08 2.15 16 3 O -0.55 -8.19 11.88 -35.23 -0.42 -8.61 16 4 C 0.11 2.22 4.76 -4.04 -0.02 2.20 16 5 N -0.76 -17.47 5.14 -61.72 -0.32 -17.78 16 6 C 0.55 16.14 7.74 -12.99 -0.10 16.04 16 7 O -0.58 -19.31 15.05 5.20 0.08 -19.23 16 8 C -0.55 -15.78 9.53 -35.63 -0.34 -16.12 16 9 H 0.07 1.81 7.86 -52.48 -0.41 1.39 16 10 C 0.09 2.49 5.49 -17.37 -0.10 2.40 16 11 N -0.77 -23.47 11.85 55.55 0.66 -22.81 16 12 Si 0.91 20.47 29.56 -169.99 -5.03 15.45 16 13 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 14 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 15 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 16 C -0.18 -2.22 5.15 -90.62 -0.47 -2.69 16 17 C -0.18 -1.92 9.74 -26.73 -0.26 -2.18 16 18 C -0.17 -1.80 9.67 -26.73 -0.26 -2.06 16 19 H 0.06 0.73 7.29 -51.93 -0.38 0.35 16 20 H 0.07 1.04 6.86 -51.93 -0.36 0.68 16 21 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.37 4.72 7.56 45.56 0.34 5.06 16 23 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 24 H 0.05 1.12 8.14 -51.92 -0.42 0.69 16 25 H 0.38 8.09 7.17 -40.82 -0.29 7.80 16 26 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 27 H 0.11 1.36 8.11 -51.93 -0.42 0.94 16 28 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.10 1.02 6.38 -51.93 -0.33 0.69 16 30 H 0.10 1.06 7.61 -51.93 -0.40 0.66 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 264.13 15.07 3.98 3.98 Total: -1.00 -34.44 264.13 -5.84 -40.27 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -3.49 Total: 10.53 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -1.30 Total: -1.79 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.34 Total: -40.60 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.34 Total: -27.85 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.45 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -34.44 -5.84 -40.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379391105.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.675 kcal (2) G-P(sol) polarization free energy of solvation -34.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds