Wall clock time and date at job start Sun Mar 29 2020 22:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47289 * 2 1 4 4 C 1.53001 * 109.47060 * 239.99951 * 2 1 3 5 5 N 1.46502 * 109.47163 * 59.99821 * 4 2 1 6 6 C 1.34773 * 120.00270 * 179.97438 * 5 4 2 7 7 O 1.21687 * 119.99820 * 0.02562 * 6 5 4 8 8 C 1.46370 * 120.00104 * 180.02562 * 6 5 4 9 9 H 1.08007 * 120.00136 * 353.94117 * 8 6 5 10 10 C 1.40057 * 120.00064 * 173.94594 * 8 6 5 11 11 N 1.30667 * 119.99610 * 6.14654 * 10 8 6 12 12 Si 1.86794 * 119.99902 * 186.15143 * 10 8 6 13 13 H 1.48504 * 109.47459 * 94.98011 * 12 10 8 14 14 H 1.48498 * 109.47077 * 214.97981 * 12 10 8 15 15 H 1.48501 * 109.47434 * 334.98227 * 12 10 8 16 16 C 1.53005 * 109.47424 * 120.00091 * 2 1 3 17 17 C 1.52998 * 117.51892 * 231.27909 * 16 2 1 18 18 C 1.52993 * 117.49929 * 299.91343 * 16 2 1 19 19 H 1.08998 * 109.46590 * 299.99722 * 1 2 3 20 20 H 1.08993 * 109.47137 * 59.99979 * 1 2 3 21 21 H 1.09004 * 109.46696 * 180.02562 * 1 2 3 22 22 H 0.96701 * 114.00377 * 180.02562 * 3 2 1 23 23 H 1.09002 * 109.47597 * 180.02562 * 4 2 1 24 24 H 1.09007 * 109.47182 * 300.00049 * 4 2 1 25 25 H 0.96996 * 119.99537 * 0.02562 * 5 4 2 26 26 H 0.97003 * 119.99472 * 179.97438 * 11 10 8 27 27 H 1.09007 * 115.54776 * 85.58189 * 16 2 1 28 28 H 1.08995 * 117.49903 * 214.96524 * 17 16 2 29 29 H 1.09000 * 117.49850 * 359.97438 * 17 16 2 30 30 H 1.09002 * 117.49933 * 359.97438 * 18 16 2 31 31 H 1.09000 * 117.50509 * 144.97316 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.5516 -0.0307 -2.4454 6 6 1.8776 -0.4908 -3.6695 7 8 2.5772 -1.4802 -3.7812 8 6 1.3901 0.1995 -4.8646 9 1 0.6909 1.0172 -4.7686 10 6 1.8301 -0.2003 -6.1328 11 7 2.5797 -1.2631 -6.2591 12 14 1.3453 0.7858 -7.6433 13 1 2.4207 1.7577 -7.9662 14 1 1.1479 -0.1339 -8.7924 15 1 0.0819 1.5176 -7.3723 16 6 2.0401 -0.7213 1.2492 17 6 3.0759 0.0038 2.1107 18 6 1.6375 -0.1484 2.6096 19 1 -0.3632 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 2.9703 1.4236 -0.0004 23 1 3.1300 -0.7217 -1.2491 24 1 1.6766 -1.7490 -1.2492 25 1 0.9942 0.7581 -2.3564 26 1 2.8842 -1.5402 -7.1374 27 1 2.1254 -1.8047 1.1646 28 1 3.8426 -0.6026 2.5930 29 1 3.3946 0.9947 1.7873 30 1 1.0097 0.7426 2.6146 31 1 1.4576 -0.8548 3.4200 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379391105.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:16 Heat of formation + Delta-G solvation = -99.928253 kcal Electronic energy + Delta-G solvation = -14358.390764 eV Core-core repulsion = 11832.192868 eV Total energy + Delta-G solvation = -2526.197896 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.56703 -39.00057 -36.17340 -34.99023 -34.37057 -31.79232 -28.90554 -27.12248 -23.96518 -23.13362 -21.57876 -20.94682 -19.36910 -17.89911 -17.54734 -16.80754 -16.12677 -15.96193 -15.52751 -15.01399 -14.54122 -14.31192 -13.62089 -13.35576 -13.27106 -13.10562 -12.87272 -12.66168 -12.60593 -12.25138 -12.00957 -11.91552 -11.43067 -11.02296 -10.93957 -10.80249 -9.88115 -9.48110 -8.31065 -6.86136 1.40014 1.41271 1.57481 2.24623 2.46096 2.82161 3.00756 3.39658 3.59925 3.70099 3.84209 3.97917 4.14673 4.31417 4.43161 4.71346 4.78460 4.83607 4.90715 4.95375 5.08304 5.23130 5.30965 5.31387 5.31596 5.87031 6.21434 6.26509 6.73341 6.85908 7.53880 8.47791 8.66187 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.064872 B = 0.006573 C = 0.006334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.512359 B = 4258.603967 C = 4419.336617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.165 3.835 3 O -0.560 6.560 4 C 0.114 3.886 5 N -0.746 5.746 6 C 0.536 3.464 7 O -0.635 6.635 8 C -0.575 4.575 9 H 0.085 0.915 10 C 0.029 3.971 11 N -0.823 5.823 12 Si 1.000 3.000 13 H -0.263 1.263 14 H -0.271 1.271 15 H -0.249 1.249 16 C -0.197 4.197 17 C -0.174 4.174 18 C -0.153 4.153 19 H 0.079 0.921 20 H 0.053 0.947 21 H 0.073 0.927 22 H 0.383 0.617 23 H 0.034 0.966 24 H 0.040 0.960 25 H 0.395 0.605 26 H 0.275 0.725 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.922 5.071 13.529 14.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.124 3.876 3 O -0.368 6.368 4 C -0.011 4.011 5 N -0.401 5.401 6 C 0.340 3.660 7 O -0.523 6.523 8 C -0.612 4.612 9 H 0.103 0.897 10 C -0.186 4.186 11 N -0.452 5.452 12 Si 0.819 3.181 13 H -0.187 1.187 14 H -0.196 1.196 15 H -0.172 1.172 16 C -0.216 4.216 17 C -0.211 4.211 18 C -0.190 4.190 19 H 0.098 0.902 20 H 0.072 0.928 21 H 0.092 0.908 22 H 0.233 0.767 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.229 0.771 26 H 0.085 0.915 27 H 0.126 0.874 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.960 4.357 13.382 14.381 hybrid contribution 0.486 0.100 -0.751 0.900 sum -2.475 4.456 12.631 13.621 Atomic orbital electron populations 1.21691 0.91586 1.02837 1.02811 1.20744 0.95270 0.81413 0.90208 1.86491 1.27743 1.25827 1.96726 1.21610 0.97448 0.95901 0.86185 1.45711 1.57020 1.32925 1.04450 1.18634 0.80039 0.83699 0.83592 1.90541 1.44289 1.30243 1.87227 1.21429 1.29896 1.19205 0.90649 0.89658 1.26992 0.92734 0.95000 1.03892 1.70193 1.27576 1.21927 1.25516 0.84983 0.79822 0.78021 0.75299 1.18735 1.19590 1.17192 1.22874 1.06931 0.99742 0.92061 1.23071 0.92961 1.02278 1.02748 1.22934 0.97744 1.03054 0.95283 0.90219 0.92804 0.90813 0.76690 0.94793 0.94204 0.77098 0.91518 0.87432 0.87753 0.87931 0.88486 0.87407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.54 8.51 71.98 0.61 -2.93 16 2 C 0.16 4.74 0.86 -10.79 -0.01 4.73 16 3 O -0.56 -15.74 11.88 -148.98 -1.77 -17.51 16 4 C 0.11 4.52 4.76 86.38 0.41 4.93 16 5 N -0.75 -34.90 5.14 -467.40 -2.40 -37.31 16 6 C 0.54 32.12 7.74 86.36 0.67 32.79 16 7 O -0.64 -43.72 15.05 -4.31 -0.06 -43.79 16 8 C -0.58 -33.54 9.53 24.83 0.24 -33.31 16 9 H 0.09 4.50 7.86 -2.91 -0.02 4.48 16 10 C 0.03 1.64 5.49 85.31 0.47 2.11 16 11 N -0.82 -51.28 11.85 21.84 0.26 -51.02 16 12 Si 1.00 41.64 29.56 68.60 2.03 43.67 16 13 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 14 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 15 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 16 C -0.20 -4.60 5.15 -10.80 -0.06 -4.66 16 17 C -0.17 -3.32 9.74 30.60 0.30 -3.02 16 18 C -0.15 -2.82 9.67 30.59 0.30 -2.52 16 19 H 0.08 1.80 7.29 -2.39 -0.02 1.78 16 20 H 0.05 1.58 6.86 -2.39 -0.02 1.57 16 21 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 22 H 0.38 9.19 7.56 -74.06 -0.56 8.63 16 23 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.04 1.69 8.14 -2.38 -0.02 1.67 16 25 H 0.39 16.65 7.17 -92.71 -0.66 15.99 16 26 H 0.27 15.44 8.29 -92.71 -0.77 14.67 16 27 H 0.11 2.57 8.11 -2.38 -0.02 2.55 16 28 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.10 1.88 6.38 -2.39 -0.02 1.87 16 30 H 0.10 1.81 7.61 -2.39 -0.02 1.80 16 31 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -75.87 264.13 0.90 -74.98 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: -0.08 Total: 32.86 kcal Atomic # 6 Polarization: -4.81 SS G_CDS: 2.93 Total: -1.89 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -2.15 Total: -88.32 kcal Atomic # 8 Polarization: -59.46 SS G_CDS: -1.83 Total: -61.30 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -75.87 0.90 -74.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379391105.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.951 kcal (2) G-P(sol) polarization free energy of solvation -75.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds