Wall clock time and date at job start Sun Mar 29 2020 22:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42896 * 109.47348 * 2 1 4 4 C 1.50698 * 109.47020 * 120.00163 * 2 1 3 5 5 O 1.21289 * 119.99816 * 94.99639 * 4 2 1 6 6 N 1.34776 * 119.99962 * 274.99898 * 4 2 1 7 7 C 1.46497 * 119.99935 * 179.97438 * 6 4 2 8 8 C 1.50698 * 109.47376 * 180.02562 * 7 6 4 9 9 H 1.08009 * 119.99660 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00201 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00031 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99937 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47315 * 59.99164 * 12 10 8 14 14 H 1.48500 * 109.47202 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46871 * 299.99299 * 12 10 8 16 16 C 1.53003 * 109.46852 * 240.00036 * 2 1 3 17 17 C 1.53001 * 117.51964 * 351.28651 * 16 2 1 18 18 C 1.52999 * 60.00190 * 107.47982 * 17 16 2 19 19 H 1.08997 * 109.47548 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.46727 * 300.00313 * 1 2 3 21 21 H 1.09002 * 109.47133 * 59.99771 * 1 2 3 22 22 H 0.96696 * 114.00050 * 179.97438 * 3 2 1 23 23 H 0.96995 * 120.00144 * 359.97438 * 6 4 2 24 24 H 1.09005 * 109.47343 * 300.00201 * 7 6 4 25 25 H 1.09003 * 109.47360 * 59.99616 * 7 6 4 26 26 H 0.97004 * 119.99894 * 180.02562 * 11 10 8 27 27 H 1.09002 * 115.54973 * 205.58434 * 16 2 1 28 28 H 1.09001 * 117.49733 * 214.97413 * 17 16 2 29 29 H 1.08995 * 117.49577 * 359.97438 * 17 16 2 30 30 H 1.09004 * 117.50150 * 252.51496 * 18 17 16 31 31 H 1.09004 * 117.49681 * 107.48417 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.3207 -1.8873 1.1759 6 7 2.1611 -0.0381 2.3914 7 6 2.6488 -0.7289 3.5877 8 6 2.6991 0.2392 4.7414 9 1 2.3982 1.2666 4.5978 10 6 3.1302 -0.1862 5.9801 11 7 3.4971 -1.4369 6.1548 12 14 3.1918 1.0138 7.4104 13 1 1.8301 1.5472 7.6680 14 1 3.6863 0.3136 8.6230 15 1 4.1075 2.1344 7.0773 16 6 2.0400 -0.7213 -1.2493 17 6 1.0111 -1.4561 -2.1109 18 6 1.6340 -0.1507 -2.6097 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3632 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 2.9704 1.4235 0.0004 23 1 1.9308 0.9031 2.4349 24 1 1.9759 -1.5507 3.8325 25 1 3.6479 -1.1216 3.3986 26 1 3.8000 -1.7363 7.0263 27 1 3.0330 -1.1629 -1.1648 28 1 1.3271 -2.3811 -2.5931 29 1 -0.0294 -1.4261 -1.7875 30 1 1.0033 0.7384 -2.6146 31 1 2.3600 -0.2169 -3.4201 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379410005.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:38 Heat of formation + Delta-G solvation = -70.513975 kcal Electronic energy + Delta-G solvation = -14356.968236 eV Core-core repulsion = 11832.045838 eV Total energy + Delta-G solvation = -2524.922398 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.92071 -37.39249 -35.48419 -34.12330 -32.25581 -30.45537 -27.29536 -25.08334 -22.83720 -22.32560 -20.53306 -19.35224 -17.97147 -16.71046 -15.99704 -15.20788 -15.12844 -14.52407 -14.14640 -13.48630 -13.33432 -12.91881 -12.42761 -12.10928 -11.95771 -11.72719 -11.52591 -11.22590 -11.00585 -10.87461 -10.50341 -10.33688 -10.31129 -10.13384 -9.41993 -8.79982 -8.73649 -7.89990 -6.17037 -4.24147 3.22329 3.25800 3.30324 3.32027 3.66036 4.03736 4.34004 4.36517 4.71570 4.91949 5.02775 5.14357 5.18967 5.43282 5.59151 5.62954 5.78421 5.86788 5.93820 6.13127 6.14364 6.27739 7.26136 7.39713 7.48917 7.56125 7.71231 7.96092 8.61776 8.76033 9.06559 9.42487 10.93127 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.063416 B = 0.006553 C = 0.006242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.424870 B = 4272.083795 C = 4484.825920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.147 3.853 3 O -0.549 6.549 4 C 0.475 3.525 5 O -0.549 6.549 6 N -0.702 5.702 7 C 0.248 3.752 8 C -0.544 4.544 9 H 0.063 0.937 10 C 0.064 3.936 11 N -0.887 5.887 12 Si 0.905 3.095 13 H -0.275 1.275 14 H -0.285 1.285 15 H -0.275 1.275 16 C -0.166 4.166 17 C -0.171 4.171 18 C -0.169 4.169 19 H 0.078 0.922 20 H 0.069 0.931 21 H 0.070 0.930 22 H 0.381 0.619 23 H 0.396 0.604 24 H 0.027 0.973 25 H 0.027 0.973 26 H 0.266 0.734 27 H 0.110 0.890 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.243 4.436 -13.376 14.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.103 3.897 3 O -0.355 6.355 4 C 0.258 3.742 5 O -0.428 6.428 6 N -0.350 5.350 7 C 0.127 3.873 8 C -0.582 4.582 9 H 0.081 0.919 10 C -0.140 4.140 11 N -0.524 5.524 12 Si 0.732 3.268 13 H -0.200 1.200 14 H -0.211 1.211 15 H -0.200 1.200 16 C -0.185 4.185 17 C -0.208 4.208 18 C -0.206 4.206 19 H 0.097 0.903 20 H 0.088 0.912 21 H 0.089 0.911 22 H 0.229 0.771 23 H 0.230 0.770 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.076 0.924 27 H 0.128 0.872 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.594 3.583 -13.221 14.448 hybrid contribution 0.658 0.800 0.937 1.397 sum -3.935 4.383 -12.284 13.624 Atomic orbital electron populations 1.21823 0.91249 1.03049 1.03377 1.20871 0.95845 0.81746 0.91199 1.86508 1.27318 1.24800 1.96880 1.21056 0.79646 0.87951 0.85574 1.90667 1.50722 1.16026 1.85412 1.46484 1.64012 1.14131 1.10381 1.19134 0.95016 0.93050 0.80073 1.21198 1.46182 0.96471 0.94361 0.91874 1.24954 0.94749 0.95441 0.98846 1.69968 1.42891 1.15310 1.24224 0.86458 0.78556 0.80699 0.81107 1.20039 1.21062 1.20032 1.22653 1.00938 1.04036 0.90913 1.23061 0.98707 0.95937 1.03122 1.22904 1.03787 0.97621 0.96278 0.90297 0.91187 0.91104 0.77065 0.77043 0.95534 0.95544 0.92383 0.87189 0.88802 0.88089 0.88460 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 7.42 37.16 0.28 -1.58 16 2 C 0.15 2.24 1.13 -91.77 -0.10 2.14 16 3 O -0.55 -7.57 12.20 -35.23 -0.43 -8.00 16 4 C 0.47 9.63 6.68 -10.99 -0.07 9.55 16 5 O -0.55 -13.27 16.16 5.55 0.09 -13.18 16 6 N -0.70 -15.12 5.46 -61.47 -0.34 -15.46 16 7 C 0.25 6.65 5.43 -5.20 -0.03 6.62 16 8 C -0.54 -14.91 9.28 -34.44 -0.32 -15.23 16 9 H 0.06 1.63 7.60 -52.48 -0.40 1.23 16 10 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 11 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 12 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 13 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 14 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 16 C -0.17 -2.31 4.83 -90.61 -0.44 -2.74 16 17 C -0.17 -2.03 9.57 -26.73 -0.26 -2.28 16 18 C -0.17 -1.84 9.80 -26.73 -0.26 -2.10 16 19 H 0.08 1.05 6.97 -51.93 -0.36 0.69 16 20 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 21 H 0.07 0.81 7.07 -51.93 -0.37 0.44 16 22 H 0.38 4.35 9.04 45.56 0.41 4.76 16 23 H 0.40 7.66 7.76 -40.82 -0.32 7.35 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.11 1.67 7.95 -51.93 -0.41 1.25 16 28 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.10 1.12 5.85 -51.93 -0.30 0.82 16 30 H 0.10 1.02 7.60 -51.93 -0.39 0.62 16 31 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 266.42 15.07 4.01 4.01 Total: -1.00 -31.75 266.42 -5.64 -37.39 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -3.39 Total: 8.74 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -1.30 Total: -3.95 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.40 Total: -40.96 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.34 Total: -21.18 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.75 -5.64 -37.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379410005.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.124 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds