Wall clock time and date at job start Sun Mar 29 2020 22:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42896 * 109.47348 * 2 1 4 4 C 1.50698 * 109.47020 * 120.00163 * 2 1 3 5 5 O 1.21289 * 119.99816 * 94.99639 * 4 2 1 6 6 N 1.34776 * 119.99962 * 274.99898 * 4 2 1 7 7 C 1.46497 * 119.99935 * 179.97438 * 6 4 2 8 8 C 1.50698 * 109.47376 * 180.02562 * 7 6 4 9 9 H 1.08009 * 119.99660 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00201 * 180.02562 * 8 7 6 11 11 N 1.31515 * 120.00031 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99937 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47315 * 59.99164 * 12 10 8 14 14 H 1.48500 * 109.47202 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46871 * 299.99299 * 12 10 8 16 16 C 1.53003 * 109.46852 * 240.00036 * 2 1 3 17 17 C 1.53001 * 117.51964 * 351.28651 * 16 2 1 18 18 C 1.52999 * 60.00190 * 107.47982 * 17 16 2 19 19 H 1.08997 * 109.47548 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.46727 * 300.00313 * 1 2 3 21 21 H 1.09002 * 109.47133 * 59.99771 * 1 2 3 22 22 H 0.96696 * 114.00050 * 179.97438 * 3 2 1 23 23 H 0.96995 * 120.00144 * 359.97438 * 6 4 2 24 24 H 1.09005 * 109.47343 * 300.00201 * 7 6 4 25 25 H 1.09003 * 109.47360 * 59.99616 * 7 6 4 26 26 H 0.97004 * 119.99894 * 180.02562 * 11 10 8 27 27 H 1.09002 * 115.54973 * 205.58434 * 16 2 1 28 28 H 1.09001 * 117.49733 * 214.97413 * 17 16 2 29 29 H 1.08995 * 117.49577 * 359.97438 * 17 16 2 30 30 H 1.09004 * 117.50150 * 252.51496 * 18 17 16 31 31 H 1.09004 * 117.49681 * 107.48417 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.3207 -1.8873 1.1759 6 7 2.1611 -0.0381 2.3914 7 6 2.6488 -0.7289 3.5877 8 6 2.6991 0.2392 4.7414 9 1 2.3982 1.2666 4.5978 10 6 3.1302 -0.1862 5.9801 11 7 3.4971 -1.4369 6.1548 12 14 3.1918 1.0138 7.4104 13 1 1.8301 1.5472 7.6680 14 1 3.6863 0.3136 8.6230 15 1 4.1075 2.1344 7.0773 16 6 2.0400 -0.7213 -1.2493 17 6 1.0111 -1.4561 -2.1109 18 6 1.6340 -0.1507 -2.6097 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3632 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 2.9704 1.4235 0.0004 23 1 1.9308 0.9031 2.4349 24 1 1.9759 -1.5507 3.8325 25 1 3.6479 -1.1216 3.3986 26 1 3.8000 -1.7363 7.0263 27 1 3.0330 -1.1629 -1.1648 28 1 1.3271 -2.3811 -2.5931 29 1 -0.0294 -1.4261 -1.7875 30 1 1.0033 0.7384 -2.6146 31 1 2.3600 -0.2169 -3.4201 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379410005.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:37 Heat of formation + Delta-G solvation = -95.551612 kcal Electronic energy + Delta-G solvation = -14358.053949 eV Core-core repulsion = 11832.045838 eV Total energy + Delta-G solvation = -2526.008111 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.35089 -38.80982 -36.66837 -36.03061 -34.28602 -31.64850 -29.31430 -26.38745 -24.75648 -23.21092 -22.11163 -20.70856 -19.58331 -18.06404 -17.73165 -16.94309 -16.59025 -16.34100 -15.53955 -15.00620 -14.69367 -14.34172 -14.01678 -13.77253 -13.43776 -13.10178 -12.99432 -12.83240 -12.69570 -12.24053 -12.11882 -11.62528 -11.53402 -11.37447 -11.12441 -10.81637 -10.41017 -9.88882 -8.31336 -6.48589 1.42222 1.46328 1.54735 1.58590 2.23921 2.43802 2.84623 3.03285 3.26009 3.62299 3.68351 3.98360 4.06415 4.27523 4.49726 4.70905 4.77231 4.85813 4.98121 5.05359 5.09907 5.18576 5.24981 5.29369 5.44358 5.62928 5.81298 6.49366 6.61624 6.87741 7.19930 7.39367 8.80604 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.063416 B = 0.006553 C = 0.006242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.424870 B = 4272.083795 C = 4484.825920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.165 3.835 3 O -0.545 6.545 4 C 0.470 3.530 5 O -0.592 6.592 6 N -0.697 5.697 7 C 0.265 3.735 8 C -0.559 4.559 9 H 0.082 0.918 10 C 0.005 3.995 11 N -0.931 5.931 12 Si 0.986 3.014 13 H -0.262 1.262 14 H -0.284 1.284 15 H -0.262 1.262 16 C -0.196 4.196 17 C -0.173 4.173 18 C -0.138 4.138 19 H 0.077 0.923 20 H 0.065 0.935 21 H 0.101 0.899 22 H 0.392 0.608 23 H 0.409 0.591 24 H -0.013 1.013 25 H -0.011 1.011 26 H 0.270 0.730 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.146 6.691 -14.237 16.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.120 3.880 3 O -0.352 6.352 4 C 0.256 3.744 5 O -0.474 6.474 6 N -0.347 5.347 7 C 0.142 3.858 8 C -0.597 4.597 9 H 0.100 0.900 10 C -0.195 4.195 11 N -0.569 5.569 12 Si 0.809 3.191 13 H -0.187 1.187 14 H -0.209 1.209 15 H -0.186 1.186 16 C -0.215 4.215 17 C -0.210 4.210 18 C -0.175 4.175 19 H 0.095 0.905 20 H 0.084 0.916 21 H 0.120 0.880 22 H 0.242 0.758 23 H 0.245 0.755 24 H 0.005 0.995 25 H 0.007 0.993 26 H 0.078 0.922 27 H 0.107 0.893 28 H 0.116 0.884 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.506 5.878 -14.121 16.256 hybrid contribution 0.963 0.042 1.144 1.496 sum -4.544 5.920 -12.977 14.970 Atomic orbital electron populations 1.21889 0.89509 1.03435 1.04705 1.20682 0.96847 0.81799 0.88626 1.86498 1.28475 1.23590 1.96614 1.22203 0.78000 0.87613 0.86553 1.90637 1.52233 1.18320 1.86215 1.46245 1.64266 1.14602 1.09585 1.18583 0.92180 0.92597 0.82447 1.21573 1.46236 0.97211 0.94631 0.90018 1.26070 0.93838 0.97356 1.02194 1.70129 1.43800 1.17782 1.25202 0.85193 0.79244 0.78055 0.76650 1.18706 1.20917 1.18607 1.22546 1.00730 1.06381 0.91848 1.23212 0.98629 0.96898 1.02232 1.22997 1.03133 0.97323 0.94046 0.90452 0.91583 0.88049 0.75848 0.75474 0.99461 0.99313 0.92159 0.89337 0.88375 0.87151 0.87177 0.87289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 7.42 71.98 0.53 -2.89 16 2 C 0.16 4.81 1.13 -11.54 -0.01 4.80 16 3 O -0.54 -13.83 12.20 -148.98 -1.82 -15.65 16 4 C 0.47 19.45 6.68 87.66 0.59 20.04 16 5 O -0.59 -29.88 16.16 -3.06 -0.05 -29.93 16 6 N -0.70 -30.66 5.46 -466.78 -2.55 -33.21 16 7 C 0.26 14.84 5.43 85.63 0.46 15.30 16 8 C -0.56 -30.94 9.28 25.60 0.24 -30.70 16 9 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 10 C 0.01 0.29 5.46 84.65 0.46 0.75 16 11 N -0.93 -56.54 13.29 21.45 0.28 -56.25 16 12 Si 0.99 42.60 29.54 68.60 2.03 44.63 16 13 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 14 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 15 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 16 C -0.20 -5.18 4.83 -10.79 -0.05 -5.23 16 17 C -0.17 -3.71 9.57 30.59 0.29 -3.42 16 18 C -0.14 -2.55 9.80 30.60 0.30 -2.25 16 19 H 0.08 1.94 6.97 -2.39 -0.02 1.93 16 20 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 21 H 0.10 1.92 7.07 -2.39 -0.02 1.90 16 22 H 0.39 8.26 9.04 -74.06 -0.67 7.59 16 23 H 0.41 15.66 7.76 -92.71 -0.72 14.94 16 24 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 25 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 26 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 27 H 0.09 2.71 7.95 -2.39 -0.02 2.69 16 28 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.11 2.16 5.85 -2.39 -0.01 2.14 16 30 H 0.11 1.80 7.60 -2.39 -0.02 1.79 16 31 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 Total: -1.00 -70.55 266.42 0.47 -70.09 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: -0.24 Total: 23.93 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 2.81 Total: -3.61 kcal Atomic # 7 Polarization: -87.20 SS G_CDS: -2.26 Total: -89.46 kcal Atomic # 8 Polarization: -43.71 SS G_CDS: -1.87 Total: -45.57 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -70.55 0.47 -70.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379410005.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.466 kcal (2) G-P(sol) polarization free energy of solvation -70.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds