Wall clock time and date at job start Sun Mar 29 2020 21:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37107 * 119.99692 * 2 1 4 4 H 1.07998 * 119.99613 * 159.23738 * 3 2 1 5 5 C 1.38955 * 120.00062 * 338.96278 * 3 2 1 6 6 N 1.31411 * 119.99606 * 338.64078 * 5 3 2 7 7 Si 1.86800 * 119.99989 * 158.63735 * 5 3 2 8 8 H 1.48499 * 109.46786 * 94.98161 * 7 5 3 9 9 H 1.48497 * 109.46921 * 214.98109 * 7 5 3 10 10 H 1.48503 * 109.47069 * 334.98631 * 7 5 3 11 11 C 1.34771 * 120.00270 * 180.02562 * 2 1 3 12 12 O 1.21298 * 120.00263 * 174.88921 * 11 2 1 13 13 C 1.50701 * 120.00277 * 354.88895 * 11 2 1 14 14 C 1.50704 * 115.54550 * 289.83324 * 13 11 2 15 15 O 1.20819 * 119.99843 * 117.17129 * 14 13 11 16 16 O 1.34230 * 119.99921 * 297.16611 * 14 13 11 17 17 C 1.52998 * 117.50160 * 144.16082 * 13 11 2 18 18 C 1.52993 * 117.49841 * 75.49936 * 13 11 2 19 19 H 1.09007 * 109.46926 * 84.41178 * 1 2 3 20 20 H 1.08995 * 109.47172 * 204.40268 * 1 2 3 21 21 H 1.08993 * 109.47599 * 324.40717 * 1 2 3 22 22 H 0.97003 * 119.99642 * 180.02562 * 6 5 3 23 23 H 0.96700 * 117.00096 * 180.02562 * 16 14 13 24 24 H 1.08999 * 117.49634 * 359.97438 * 17 13 11 25 25 H 1.09000 * 117.49851 * 145.02158 * 17 13 11 26 26 H 1.08998 * 117.49871 * 214.98436 * 18 13 11 27 27 H 1.08999 * 117.50258 * 0.02562 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1778 1.2178 0.3316 5 6 1.5251 2.3507 -0.4320 6 7 0.4709 2.2786 -1.2134 7 14 2.1827 4.0168 0.0981 8 1 3.0983 4.5425 -0.9462 9 1 1.0505 4.9595 0.2840 10 1 2.9223 3.8727 1.3778 11 6 2.1389 -1.1671 -0.0005 12 8 3.3482 -1.1692 -0.0941 13 6 1.3900 -2.4698 0.1152 14 6 0.7670 -2.7440 1.4597 15 8 -0.4328 -2.8455 1.5602 16 8 1.5450 -2.8757 2.5456 17 6 1.9285 -3.6665 -0.6713 18 6 0.6439 -2.9681 -1.1241 19 1 -0.3633 0.1001 -1.0229 20 1 -0.3633 -0.9358 0.4246 21 1 -0.3634 0.8356 0.5981 22 1 0.0346 3.0907 -1.5152 23 1 1.0998 -3.0514 3.3859 24 1 2.8242 -3.5116 -1.2728 25 1 1.8318 -4.6524 -0.2164 26 1 -0.2974 -3.4947 -0.9669 27 1 0.6950 -2.3541 -2.0232 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379417012.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:58 Heat of formation + Delta-G solvation = -110.862393 kcal Electronic energy + Delta-G solvation = -14629.886553 eV Core-core repulsion = 11967.381422 eV Total energy + Delta-G solvation = -2662.505131 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.91895 -40.19387 -37.61211 -37.10884 -36.44814 -33.68749 -28.54958 -27.47506 -26.12506 -23.58001 -23.13601 -20.55688 -19.30992 -18.91771 -18.42184 -17.16552 -16.99037 -16.32042 -15.95642 -15.69306 -15.15156 -14.77946 -13.89607 -13.73027 -13.33457 -13.29918 -12.81640 -12.65292 -12.57703 -12.36347 -12.22674 -12.13951 -11.71395 -11.46349 -11.08664 -10.46574 -9.79345 -8.43253 -6.04224 0.91722 1.32520 1.40407 1.54000 1.70248 2.01579 2.20877 2.57165 2.93274 3.02851 3.70483 3.74555 3.81921 4.17533 4.50914 4.59901 4.67797 4.84630 4.85842 5.10684 5.21484 5.39687 5.43813 5.98330 6.36210 6.90344 7.05646 7.33140 7.89224 8.59805 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.041547 B = 0.010004 C = 0.009923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.772571 B = 2798.192613 C = 2821.185642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.115 3.885 2 N -0.445 5.445 3 C -0.357 4.357 4 H 0.076 0.924 5 C 0.003 3.997 6 N -0.884 5.884 7 Si 0.990 3.010 8 H -0.272 1.272 9 H -0.265 1.265 10 H -0.269 1.269 11 C 0.472 3.528 12 O -0.618 6.618 13 C -0.186 4.186 14 C 0.536 3.464 15 O -0.522 6.522 16 O -0.505 6.505 17 C -0.108 4.108 18 C -0.117 4.117 19 H 0.057 0.943 20 H 0.064 0.936 21 H 0.045 0.955 22 H 0.277 0.723 23 H 0.430 0.570 24 H 0.105 0.895 25 H 0.137 0.863 26 H 0.133 0.867 27 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.166 -8.057 3.108 9.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.162 5.162 3 C -0.484 4.484 4 H 0.094 0.906 5 C -0.201 4.201 6 N -0.520 5.520 7 Si 0.812 3.188 8 H -0.198 1.198 9 H -0.190 1.190 10 H -0.194 1.194 11 C 0.260 3.740 12 O -0.505 6.505 13 C -0.191 4.191 14 C 0.379 3.621 15 O -0.412 6.412 16 O -0.318 6.318 17 C -0.145 4.145 18 C -0.154 4.154 19 H 0.076 0.924 20 H 0.083 0.917 21 H 0.064 0.936 22 H 0.087 0.913 23 H 0.293 0.707 24 H 0.124 0.876 25 H 0.155 0.845 26 H 0.151 0.849 27 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.888 -7.844 2.642 8.766 hybrid contribution -0.022 0.970 0.706 1.200 sum -2.910 -6.874 3.347 8.181 Atomic orbital electron populations 1.21514 0.79538 0.99835 1.01888 1.43812 1.06558 1.04581 1.61228 1.19662 0.99096 0.84843 1.44789 0.90569 1.26154 0.96825 1.03092 0.93996 1.70101 1.22133 1.30978 1.28831 0.84991 0.78275 0.76604 0.78886 1.19754 1.18957 1.19375 1.19223 0.87009 0.83858 0.83895 1.90482 1.15632 1.87023 1.57362 1.20815 1.09646 0.97822 0.90800 1.21669 0.84179 0.70999 0.85299 1.90666 1.16161 1.47860 1.86470 1.84567 1.44538 1.82609 1.20134 1.23210 0.98411 0.93940 0.98927 1.23271 0.97808 1.01053 0.93238 0.92434 0.91722 0.93641 0.91294 0.70740 0.87612 0.84487 0.84875 0.87758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.48 8.40 127.77 1.07 6.55 15 2 N -0.44 -23.91 3.01 -658.90 -1.99 -25.89 15 3 C -0.36 -20.69 9.23 84.04 0.78 -19.91 15 4 H 0.08 4.69 7.49 -2.91 -0.02 4.67 15 5 C 0.00 0.17 4.92 84.93 0.42 0.59 15 6 N -0.88 -47.25 11.10 21.66 0.24 -47.01 15 7 Si 0.99 42.19 29.60 68.60 2.03 44.22 15 8 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 9 H -0.27 -10.55 7.11 99.48 0.71 -9.84 15 10 H -0.27 -11.46 7.11 99.48 0.71 -10.75 15 11 C 0.47 24.10 6.83 87.66 0.60 24.70 15 12 O -0.62 -36.03 16.53 -3.08 -0.05 -36.08 15 13 C -0.19 -7.14 1.27 -53.68 -0.07 -7.20 15 14 C 0.54 18.83 6.74 71.24 0.48 19.31 15 15 O -0.52 -18.73 16.12 21.98 0.35 -18.38 15 16 O -0.50 -15.36 13.42 -51.42 -0.69 -16.05 15 17 C -0.11 -3.19 9.78 30.62 0.30 -2.89 15 18 C -0.12 -3.56 9.23 30.62 0.28 -3.28 15 19 H 0.06 2.80 7.37 -2.38 -0.02 2.78 15 20 H 0.06 2.74 4.38 -2.39 -0.01 2.73 15 21 H 0.04 2.22 7.46 -2.39 -0.02 2.20 15 22 H 0.28 13.71 8.31 -92.71 -0.77 12.94 15 23 H 0.43 7.80 9.10 -74.06 -0.67 7.13 15 24 H 0.11 3.34 8.08 -2.39 -0.02 3.32 15 25 H 0.14 3.03 8.14 -2.39 -0.02 3.01 15 26 H 0.13 3.39 7.95 -2.39 -0.02 3.37 15 27 H 0.10 3.36 8.14 -2.39 -0.02 3.34 15 Total: -1.00 -71.37 243.93 4.29 -67.08 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.53 Total: 14.24 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: 3.86 Total: 17.87 kcal Atomic # 7 Polarization: -71.16 SS G_CDS: -1.75 Total: -72.91 kcal Atomic # 8 Polarization: -70.12 SS G_CDS: -0.39 Total: -70.51 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -71.37 4.29 -67.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379417012.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.780 kcal (2) G-P(sol) polarization free energy of solvation -71.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds