Wall clock time and date at job start Sun Mar 29 2020 22:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47327 * 2 1 4 4 C 1.50703 * 113.07922 * 77.13559 * 3 2 1 5 5 O 1.21277 * 119.99998 * 353.45718 * 4 3 2 6 6 N 1.34767 * 119.99655 * 173.45985 * 4 3 2 7 7 C 1.46505 * 120.00221 * 179.97438 * 6 4 3 8 8 C 1.50694 * 109.47415 * 179.97438 * 7 6 4 9 9 H 1.07994 * 120.00148 * 0.02562 * 8 7 6 10 10 C 1.37875 * 119.99876 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00054 * 180.02562 * 10 8 7 12 12 Si 1.86797 * 120.00167 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.47235 * 89.99627 * 12 10 8 14 14 H 1.48504 * 109.47217 * 209.99992 * 12 10 8 15 15 H 1.48501 * 109.47162 * 329.99588 * 12 10 8 16 16 C 1.54026 * 113.81352 * 305.23010 * 3 2 1 17 17 O 1.44182 * 85.51799 * 223.19593 * 16 3 2 18 18 C 1.44178 * 93.33853 * 24.19348 * 17 16 3 19 19 H 1.09007 * 109.47451 * 185.36249 * 1 2 3 20 20 H 1.08994 * 109.47591 * 305.36764 * 1 2 3 21 21 H 1.09003 * 109.47083 * 65.36879 * 1 2 3 22 22 H 1.08999 * 109.46923 * 239.99548 * 2 1 3 23 23 H 1.09008 * 109.46517 * 120.00225 * 2 1 3 24 24 H 0.97001 * 120.00493 * 359.97438 * 6 4 3 25 25 H 1.08998 * 109.46641 * 300.00273 * 7 6 4 26 26 H 1.08999 * 109.47036 * 59.99420 * 7 6 4 27 27 H 0.97003 * 120.00082 * 180.02562 * 11 10 8 28 28 H 1.08999 * 113.87021 * 337.33685 * 16 3 2 29 29 H 1.09002 * 113.86515 * 109.05084 * 16 3 2 30 30 H 1.09000 * 113.86795 * 221.66420 * 18 17 16 31 31 H 1.08998 * 113.98089 * 89.96773 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.9460 2.1024 1.3516 5 8 1.3922 1.5321 2.2676 6 7 2.4771 3.3262 1.5424 7 6 2.3852 3.9680 2.8561 8 6 3.0523 5.3182 2.8034 9 1 3.4996 5.6640 1.8832 10 6 3.0907 6.1126 3.9296 11 7 3.6724 7.2912 3.8834 12 14 2.3164 5.5150 5.5210 13 1 3.3273 4.7708 6.3144 14 1 1.8323 6.6802 6.3041 15 1 1.1739 4.6188 5.2096 16 6 1.4810 2.2998 -1.1510 17 8 2.8293 2.7916 -1.2888 18 6 3.4089 1.6182 -0.6841 19 1 -0.3634 -1.0232 0.0960 20 1 -0.3634 0.5948 0.8379 21 1 -0.3633 0.4283 -0.9342 22 1 1.8933 -0.5139 -0.8899 23 1 1.8932 -0.5139 0.8901 24 1 2.9203 3.7822 0.8098 25 1 1.3368 4.0906 3.1280 26 1 2.8830 3.3460 3.6000 27 1 3.6997 7.8500 4.6759 28 1 1.1342 1.7188 -2.0056 29 1 0.7660 3.0572 -0.8298 30 1 4.2230 1.8348 0.0076 31 1 3.6517 0.8278 -1.3943 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381902563.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:23 Heat of formation + Delta-G solvation = -59.822387 kcal Electronic energy + Delta-G solvation = -14600.312048 eV Core-core repulsion = 12075.853272 eV Total energy + Delta-G solvation = -2524.458776 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.16978 -38.10179 -34.55848 -33.47543 -32.31898 -29.05227 -27.50912 -26.63984 -23.28783 -22.91032 -20.99623 -19.14107 -17.21056 -16.44070 -16.17269 -15.76567 -14.85447 -14.81754 -14.47399 -14.18177 -13.62868 -13.02394 -12.78506 -12.58642 -12.29229 -12.10117 -11.95537 -11.07269 -10.98750 -10.79392 -10.64959 -10.36311 -10.04778 -9.88588 -9.48339 -9.08829 -8.77192 -8.15745 -6.20145 -4.22456 2.95782 3.26509 3.33119 3.41185 3.58010 3.86153 4.33643 4.37057 4.70400 5.02562 5.14599 5.17066 5.19514 5.41238 5.42758 5.60772 5.65047 5.86544 5.89056 5.95589 6.06004 6.22801 6.36842 6.78937 7.05407 7.22560 7.38963 8.14125 8.53201 8.76093 8.91134 9.39473 10.91862 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043297 B = 0.008367 C = 0.007382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.541951 B = 3345.646214 C = 3791.947221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.099 4.099 3 C -0.155 4.155 4 C 0.521 3.479 5 O -0.551 6.551 6 N -0.697 5.697 7 C 0.220 3.780 8 C -0.544 4.544 9 H 0.081 0.919 10 C 0.078 3.922 11 N -0.892 5.892 12 Si 0.877 3.123 13 H -0.273 1.273 14 H -0.283 1.283 15 H -0.261 1.261 16 C 0.055 3.945 17 O -0.374 6.374 18 C 0.049 3.951 19 H 0.054 0.946 20 H 0.066 0.934 21 H 0.049 0.951 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.404 0.596 25 H 0.025 0.975 26 H 0.021 0.979 27 H 0.267 0.733 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.459 -12.461 -9.577 16.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.137 4.137 3 C -0.159 4.159 4 C 0.305 3.695 5 O -0.430 6.430 6 N -0.346 5.346 7 C 0.098 3.902 8 C -0.581 4.581 9 H 0.099 0.901 10 C -0.126 4.126 11 N -0.529 5.529 12 Si 0.703 3.297 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.186 1.186 16 C -0.023 4.023 17 O -0.292 6.292 18 C -0.029 4.029 19 H 0.073 0.927 20 H 0.086 0.914 21 H 0.068 0.932 22 H 0.085 0.915 23 H 0.093 0.907 24 H 0.239 0.761 25 H 0.043 0.957 26 H 0.039 0.961 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.685 -12.405 -8.893 15.702 hybrid contribution -0.156 -0.069 0.619 0.642 sum -3.841 -12.474 -8.274 15.453 Atomic orbital electron populations 1.21739 0.95100 1.01885 1.02098 1.21302 0.96891 0.93032 1.02425 1.23985 0.98067 0.98239 0.95583 1.19612 0.79607 0.82174 0.88092 1.90637 1.44514 1.64410 1.43433 1.46281 1.55893 1.16721 1.15724 1.19520 0.97264 0.93109 0.80345 1.21102 1.38045 0.99464 0.99530 0.90141 1.24795 0.94478 0.94519 0.98802 1.69885 1.43036 1.09979 1.29986 0.86822 0.80662 0.78779 0.83436 1.19859 1.20865 1.18557 1.23982 0.86884 0.96188 0.95206 1.89729 1.18753 1.36484 1.84235 1.24088 0.95467 0.88269 0.95041 0.92721 0.91448 0.93152 0.91488 0.90670 0.76073 0.95689 0.96124 0.92265 0.89258 0.88633 0.88456 0.89274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.47 37.16 0.35 -1.41 16 2 C -0.10 -1.18 5.16 -26.73 -0.14 -1.32 16 3 C -0.16 -2.18 1.00 -154.58 -0.15 -2.33 16 4 C 0.52 10.07 6.90 -10.99 -0.08 10.00 16 5 O -0.55 -12.35 15.14 5.56 0.08 -12.26 16 6 N -0.70 -14.79 5.38 -61.47 -0.33 -15.12 16 7 C 0.22 5.52 4.50 -5.19 -0.02 5.50 16 8 C -0.54 -15.26 9.83 -34.44 -0.34 -15.60 16 9 H 0.08 2.38 7.84 -52.49 -0.41 1.97 16 10 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 11 N -0.89 -26.79 13.96 55.43 0.77 -26.02 16 12 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 13 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 15 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 16 C 0.05 0.69 7.36 37.60 0.28 0.96 16 17 O -0.37 -5.44 11.12 -35.23 -0.39 -5.83 16 18 C 0.05 0.60 7.98 37.61 0.30 0.90 16 19 H 0.05 0.56 8.14 -51.92 -0.42 0.13 16 20 H 0.07 0.98 7.07 -51.93 -0.37 0.61 16 21 H 0.05 0.49 7.30 -51.93 -0.38 0.12 16 22 H 0.07 0.62 7.83 -51.93 -0.41 0.21 16 23 H 0.07 1.01 7.83 -51.92 -0.41 0.60 16 24 H 0.40 8.12 6.66 -40.82 -0.27 7.85 16 25 H 0.03 0.66 7.20 -51.93 -0.37 0.29 16 26 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 27 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.09 0.86 7.77 -51.93 -0.40 0.46 16 29 H 0.10 1.26 8.09 -51.93 -0.42 0.84 16 30 H 0.10 1.26 8.09 -51.93 -0.42 0.84 16 31 H 0.09 0.83 7.89 -51.93 -0.41 0.42 16 LS Contribution 259.05 15.07 3.90 3.90 Total: -1.00 -31.80 259.05 -4.78 -36.58 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -4.25 Total: 2.96 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: 0.10 Total: -1.17 kcal Atomic # 7 Polarization: -41.58 SS G_CDS: 0.44 Total: -41.13 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.31 Total: -18.10 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.80 -4.78 -36.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381902563.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.241 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds