Wall clock time and date at job start Sun Mar 29 2020 21:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86795 * 119.99926 * 2 1 4 4 H 1.48502 * 109.47285 * 179.72601 * 3 2 1 5 5 H 1.48506 * 109.47253 * 299.72439 * 3 2 1 6 6 H 1.48502 * 109.47343 * 59.72162 * 3 2 1 7 7 C 1.40044 * 120.00046 * 179.72140 * 2 1 3 8 8 H 1.08006 * 120.00189 * 179.97438 * 7 2 1 9 9 C 1.46375 * 120.00179 * 0.02562 * 7 2 1 10 10 O 1.21694 * 119.99881 * 354.84771 * 9 7 2 11 11 N 1.34780 * 120.00236 * 174.84417 * 9 7 2 12 12 C 1.46497 * 119.99781 * 5.88582 * 11 9 7 13 13 C 1.52999 * 109.47128 * 89.99875 * 12 11 9 14 14 C 1.53002 * 109.47230 * 179.97438 * 13 12 11 15 15 O 1.42903 * 109.46893 * 180.02562 * 14 13 12 16 16 C 1.46499 * 119.99895 * 185.88494 * 11 9 7 17 17 C 1.52996 * 117.50181 * 16.48901 * 16 11 9 18 18 C 1.52996 * 117.50236 * 307.86237 * 16 11 9 19 19 H 0.97001 * 120.00008 * 0.27587 * 1 2 3 20 20 H 1.09001 * 109.47221 * 209.99912 * 12 11 9 21 21 H 1.08999 * 109.47221 * 330.00075 * 12 11 9 22 22 H 1.09001 * 109.47100 * 300.00111 * 13 12 11 23 23 H 1.08999 * 109.46906 * 60.00007 * 13 12 11 24 24 H 1.09002 * 109.46828 * 300.00028 * 14 13 12 25 25 H 1.08999 * 109.47006 * 60.00269 * 14 13 12 26 26 H 0.96702 * 113.99765 * 180.02562 * 15 14 13 27 27 H 1.09005 * 115.54730 * 162.18976 * 16 11 9 28 28 H 1.09006 * 117.49958 * 359.97438 * 17 16 11 29 29 H 1.08999 * 117.50644 * 145.01852 * 17 16 11 30 30 H 1.08994 * 117.50174 * 214.97982 * 18 16 11 31 31 H 1.09007 * 117.49483 * 359.97438 * 18 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7008 1.3464 0.0067 5 1 1.8870 2.3935 -1.2159 6 1 1.8769 2.3994 1.2091 7 6 2.0070 -1.2128 0.0059 8 1 3.0871 -1.2128 0.0055 9 6 1.2752 -2.4805 0.0115 10 8 0.0619 -2.4822 0.1057 11 7 1.9450 -3.6458 -0.0877 12 6 3.4099 -3.6523 -0.0713 13 6 3.9031 -3.7864 1.3708 14 6 5.4330 -3.7939 1.3880 15 8 5.8936 -3.9198 2.7349 16 6 1.2082 -4.9059 -0.2120 17 6 -0.2672 -4.8254 -0.6086 18 6 0.1206 -5.1936 0.8249 19 1 -0.4850 0.8400 -0.0040 20 1 3.7762 -4.4932 -0.6602 21 1 3.7822 -2.7207 -0.4974 22 1 3.5369 -2.9456 1.9598 23 1 3.5308 -4.7181 1.7969 24 1 5.7989 -4.6350 0.7991 25 1 5.8057 -2.8625 0.9617 26 1 6.8567 -3.9311 2.8218 27 1 1.7845 -5.7526 -0.5852 28 1 -0.6900 -3.8348 -0.7767 29 1 -0.6621 -5.6191 -1.2429 30 1 -0.0189 -6.2295 1.1337 31 1 -0.0464 -4.4454 1.5999 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381933337.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:09 Heat of formation + Delta-G solvation = -80.224100 kcal Electronic energy + Delta-G solvation = -14599.046052 eV Core-core repulsion = 12073.702592 eV Total energy + Delta-G solvation = -2525.343460 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.41337 -37.97573 -36.77420 -35.53604 -34.50724 -31.73356 -28.42617 -25.94023 -23.87420 -23.13902 -22.40201 -20.73179 -18.63851 -17.97742 -17.51691 -16.94784 -16.40315 -15.78522 -15.47690 -14.95256 -14.57178 -14.26812 -13.80769 -13.57705 -13.31151 -12.97063 -12.82387 -12.53000 -12.17537 -11.98125 -11.93832 -11.73011 -11.64613 -11.06066 -10.90712 -10.79434 -9.48459 -8.84594 -8.24866 -6.81201 1.37520 1.38695 1.55266 2.22149 2.42648 2.69792 3.13697 3.47118 3.74994 4.04782 4.16838 4.19036 4.32094 4.35849 4.54417 4.57749 4.77005 4.84470 4.85219 4.89258 5.18697 5.26416 5.32927 5.44676 5.66005 5.79624 6.20001 6.49376 6.89918 7.00240 7.44410 8.50594 8.69618 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.019089 B = 0.013410 C = 0.008389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.451233 B = 2087.569008 C = 3336.849685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.030 3.970 3 Si 0.989 3.011 4 H -0.245 1.245 5 H -0.267 1.267 6 H -0.273 1.273 7 C -0.566 4.566 8 H 0.090 0.910 9 C 0.540 3.460 10 O -0.608 6.608 11 N -0.621 5.621 12 C 0.133 3.867 13 C -0.130 4.130 14 C 0.086 3.914 15 O -0.599 6.599 16 C 0.086 3.914 17 C -0.208 4.208 18 C -0.193 4.193 19 H 0.272 0.728 20 H 0.095 0.905 21 H 0.076 0.924 22 H 0.034 0.966 23 H 0.056 0.944 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.397 0.603 27 H 0.153 0.847 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.118 0.882 31 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.941 -6.830 -0.778 13.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.185 4.185 3 Si 0.809 3.191 4 H -0.168 1.168 5 H -0.192 1.192 6 H -0.199 1.199 7 C -0.602 4.602 8 H 0.108 0.892 9 C 0.346 3.654 10 O -0.495 6.495 11 N -0.354 5.354 12 C 0.010 3.990 13 C -0.169 4.169 14 C 0.008 3.992 15 O -0.408 6.408 16 C -0.019 4.019 17 C -0.246 4.246 18 C -0.232 4.232 19 H 0.082 0.918 20 H 0.114 0.886 21 H 0.094 0.906 22 H 0.053 0.947 23 H 0.075 0.925 24 H 0.092 0.908 25 H 0.073 0.927 26 H 0.247 0.753 27 H 0.170 0.830 28 H 0.111 0.889 29 H 0.124 0.876 30 H 0.136 0.864 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.520 -6.750 -0.626 12.515 hybrid contribution 0.311 0.888 0.151 0.953 sum 10.831 -5.862 -0.475 12.325 Atomic orbital electron populations 1.70187 1.09385 1.28659 1.36844 1.26916 0.95463 1.04742 0.91377 0.85090 0.79657 0.75954 0.78393 1.16759 1.19235 1.19870 1.21546 0.94749 0.89908 1.53998 0.89176 1.18618 0.86752 0.83899 0.76122 1.90417 1.16046 1.87080 1.55975 1.47396 1.06226 1.04718 1.77060 1.21260 0.79396 1.03254 0.95136 1.21870 0.95542 1.01227 0.98277 1.22069 0.92997 1.01080 0.83072 1.86457 1.28840 1.97212 1.28262 1.21734 0.88602 0.88929 1.02607 1.23651 0.99022 1.03942 0.97949 1.23075 1.06479 1.00965 0.92659 0.91784 0.88649 0.90561 0.94740 0.92473 0.90810 0.92665 0.75300 0.82963 0.88887 0.87606 0.86433 0.93345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.37 11.84 21.84 0.26 -50.11 16 2 C 0.03 1.67 5.50 85.30 0.47 2.14 16 3 Si 0.99 41.18 29.56 68.60 2.03 43.21 16 4 H -0.24 -9.32 7.11 99.48 0.71 -8.62 16 5 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 6 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 7 C -0.57 -31.79 8.76 24.83 0.22 -31.57 16 8 H 0.09 4.55 5.94 -2.91 -0.02 4.53 16 9 C 0.54 31.09 7.39 86.36 0.64 31.73 16 10 O -0.61 -39.71 10.78 -4.33 -0.05 -39.75 16 11 N -0.62 -28.15 2.84 -802.89 -2.28 -30.43 16 12 C 0.13 4.62 5.27 86.38 0.45 5.07 16 13 C -0.13 -4.38 5.91 30.59 0.18 -4.20 16 14 C 0.09 2.10 7.05 71.98 0.51 2.61 16 15 O -0.60 -15.30 13.66 -148.98 -2.04 -17.34 16 16 C 0.09 3.39 6.62 44.99 0.30 3.69 16 17 C -0.21 -8.88 9.63 30.59 0.29 -8.58 16 18 C -0.19 -7.83 9.87 30.59 0.30 -7.53 16 19 H 0.27 15.20 8.29 -92.71 -0.77 14.43 16 20 H 0.10 2.51 8.03 -2.39 -0.02 2.49 16 21 H 0.08 2.77 5.93 -2.39 -0.01 2.75 16 22 H 0.03 1.43 8.14 -2.39 -0.02 1.42 16 23 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.40 5.54 9.12 -74.06 -0.68 4.86 16 27 H 0.15 4.46 8.09 -2.38 -0.02 4.44 16 28 H 0.09 5.11 5.22 -5.46 -0.03 5.08 16 29 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 30 H 0.12 3.74 8.14 -2.39 -0.02 3.72 16 31 H 0.05 2.41 7.59 -2.38 -0.02 2.39 16 Total: -1.00 -77.60 263.05 1.73 -75.87 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.44 Total: 25.19 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: 3.36 Total: -6.64 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -2.02 Total: -80.54 kcal Atomic # 8 Polarization: -55.01 SS G_CDS: -2.08 Total: -57.09 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -77.60 1.73 -75.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381933337.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.357 kcal (2) G-P(sol) polarization free energy of solvation -77.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds