Wall clock time and date at job start Sun Mar 29 2020 21:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31746 * 123.76441 * 2 1 4 4 N 1.27571 * 118.27105 * 180.02562 * 3 2 1 5 5 S 1.56508 * 109.22644 * 0.02562 * 4 3 2 6 6 C 1.35346 * 123.77028 * 180.02562 * 2 1 3 7 7 C 1.50702 * 127.92020 * 0.23867 * 6 2 1 8 8 N 1.46901 * 109.47281 * 89.70495 * 7 6 2 9 9 C 1.46899 * 110.99889 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.46744 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00344 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99645 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00216 * 0.02562 * 12 10 9 14 14 Si 1.86808 * 119.99923 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46637 * 60.00603 * 14 12 10 16 16 H 1.48500 * 109.46981 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47382 * 300.00367 * 14 12 10 18 18 H 1.08997 * 109.46820 * 269.97187 * 1 2 3 19 19 H 1.08998 * 109.47135 * 29.97367 * 1 2 3 20 20 H 1.09002 * 109.46588 * 149.97453 * 1 2 3 21 21 H 1.09003 * 109.46558 * 209.70395 * 7 6 2 22 22 H 1.09004 * 109.47153 * 329.70026 * 7 6 2 23 23 H 1.00905 * 110.99585 * 303.95414 * 8 7 6 24 24 H 1.09002 * 109.47097 * 299.99837 * 9 8 7 25 25 H 1.09001 * 109.46746 * 59.99807 * 9 8 7 26 26 H 0.97002 * 119.99757 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2392 1.0952 0.0000 4 7 3.5091 0.9731 -0.0005 5 16 3.8806 -0.5472 -0.0017 6 6 2.2594 -1.1251 -0.0005 7 6 1.7859 -2.5558 -0.0061 8 7 1.6301 -3.0147 -1.3929 9 6 1.1693 -4.4088 -1.4374 10 6 1.0208 -4.8430 -2.8728 11 1 1.2466 -4.1526 -3.6720 12 6 0.5978 -6.1222 -3.1658 13 7 0.3233 -6.9631 -2.1926 14 14 0.4130 -6.6603 -4.9451 15 1 1.7236 -6.5493 -5.6344 16 1 -0.0515 -8.0700 -4.9902 17 1 -0.5793 -5.7896 -5.6251 18 1 -0.3633 -0.0005 1.0277 19 1 -0.3633 0.8902 -0.5134 20 1 -0.3632 -0.8898 -0.5143 21 1 2.5176 -3.1825 0.5040 22 1 0.8276 -2.6234 0.5089 23 1 1.0055 -2.4104 -1.9056 24 1 1.8970 -5.0481 -0.9375 25 1 0.2069 -4.4896 -0.9323 26 1 0.0253 -7.8629 -2.3988 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384219334.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:45 Heat of formation + Delta-G solvation = 38.022377 kcal Electronic energy + Delta-G solvation = -11630.103981 eV Core-core repulsion = 9449.100600 eV Total energy + Delta-G solvation = -2181.003381 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.91391 -37.52500 -35.04288 -33.76154 -30.55367 -28.33770 -27.62051 -25.25870 -23.43556 -21.27508 -19.59385 -18.60042 -16.99862 -16.78583 -16.24689 -16.08246 -15.12093 -14.74551 -14.20934 -13.92766 -13.88889 -13.45131 -13.18997 -13.08843 -12.66333 -12.59478 -12.22843 -12.04941 -11.37116 -11.07749 -10.66046 -10.61157 -10.51597 -9.20664 -8.21224 -6.31365 -0.77633 0.18037 0.74849 1.18110 1.44227 1.46181 1.54187 2.41632 3.09123 3.13186 3.51417 3.73958 3.87534 4.37840 4.52759 4.62925 4.69459 4.78957 5.08964 5.15683 5.27950 5.60818 6.00746 6.37308 6.62779 6.75166 6.87150 7.39251 8.89630 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.052919 B = 0.006332 C = 0.006182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.980047 B = 4420.604279 C = 4528.363945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.017 3.983 3 N -0.267 5.267 4 N -0.330 5.330 5 S 0.486 5.514 6 C -0.250 4.250 7 C 0.141 3.859 8 N -0.684 5.684 9 C 0.209 3.791 10 C -0.537 4.537 11 H 0.062 0.938 12 C 0.007 3.993 13 N -0.931 5.931 14 Si 0.967 3.033 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.268 1.268 18 H 0.097 0.903 19 H 0.089 0.911 20 H 0.081 0.919 21 H 0.089 0.911 22 H 0.060 0.940 23 H 0.337 0.663 24 H 0.009 0.991 25 H -0.027 1.027 26 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.365 10.015 5.032 11.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.129 4.129 3 N -0.133 5.133 4 N -0.309 5.309 5 S 0.622 5.378 6 C -0.389 4.389 7 C 0.010 3.990 8 N -0.316 5.316 9 C 0.082 3.918 10 C -0.575 4.575 11 H 0.080 0.920 12 C -0.192 4.192 13 N -0.570 5.570 14 Si 0.792 3.208 15 H -0.196 1.196 16 H -0.209 1.209 17 H -0.193 1.193 18 H 0.115 0.885 19 H 0.107 0.893 20 H 0.099 0.901 21 H 0.108 0.892 22 H 0.078 0.922 23 H 0.154 0.846 24 H 0.028 0.972 25 H -0.009 1.009 26 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.596 10.801 5.009 12.762 hybrid contribution -2.401 -1.014 -0.468 2.648 sum 2.195 9.787 4.542 11.011 Atomic orbital electron populations 1.20383 0.83475 1.04422 1.04635 1.22618 1.01384 0.86348 1.02547 1.71219 0.97134 1.28715 1.16255 1.78571 1.10642 1.17318 1.24341 1.81193 1.08578 0.98775 1.49275 1.27072 1.00126 1.01967 1.09729 1.20155 1.00722 0.86335 0.91837 1.60636 1.55343 1.04537 1.11067 1.19240 0.92217 0.84298 0.96072 1.21479 1.44731 0.98120 0.93164 0.91961 1.25834 0.94859 0.96597 1.01908 1.70053 1.46511 1.06708 1.33775 0.85470 0.78788 0.77131 0.79422 1.19572 1.20918 1.19263 0.88455 0.89258 0.90060 0.89222 0.92221 0.84572 0.97250 1.00928 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.48 10.02 71.24 0.71 -0.77 15 2 C 0.02 0.48 6.89 41.90 0.29 0.76 15 3 N -0.27 -8.29 11.68 -51.24 -0.60 -8.89 15 4 N -0.33 -10.00 12.54 37.02 0.46 -9.53 15 5 S 0.49 12.44 23.40 -56.49 -1.32 11.12 15 6 C -0.25 -7.00 6.18 25.02 0.15 -6.85 15 7 C 0.14 4.33 5.79 85.56 0.50 4.82 15 8 N -0.68 -26.61 6.48 -521.97 -3.38 -29.99 15 9 C 0.21 10.29 5.44 85.56 0.47 10.76 15 10 C -0.54 -29.05 9.32 25.60 0.24 -28.81 15 11 H 0.06 3.30 7.81 -2.91 -0.02 3.28 15 12 C 0.01 0.37 5.46 84.65 0.46 0.83 15 13 N -0.93 -53.79 13.29 21.45 0.28 -53.50 15 14 Si 0.97 42.77 29.54 68.60 2.03 44.80 15 15 H -0.27 -11.68 7.11 99.48 0.71 -10.97 15 16 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 17 H -0.27 -11.38 7.11 99.48 0.71 -10.67 15 18 H 0.10 1.73 8.14 -2.39 -0.02 1.71 15 19 H 0.09 1.75 8.14 -2.39 -0.02 1.73 15 20 H 0.08 1.77 7.67 -2.39 -0.02 1.75 15 21 H 0.09 2.67 8.14 -2.39 -0.02 2.65 15 22 H 0.06 1.73 7.77 -2.38 -0.02 1.71 15 23 H 0.34 12.63 8.72 -89.69 -0.78 11.85 15 24 H 0.01 0.50 8.14 -2.39 -0.02 0.48 15 25 H -0.03 -1.40 8.14 -2.39 -0.02 -1.42 15 26 H 0.27 14.49 8.31 -92.71 -0.77 13.72 15 Total: -1.00 -61.74 248.33 0.70 -61.03 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: 0.41 Total: 4.21 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 2.82 Total: -19.24 kcal Atomic # 7 Polarization: -98.68 SS G_CDS: -3.23 Total: -101.91 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: 12.44 SS G_CDS: -1.32 Total: 11.12 kcal Total: -61.74 0.70 -61.03 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384219334.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.056 kcal (2) G-P(sol) polarization free energy of solvation -61.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds