Wall clock time and date at job start Sun Mar 29 2020 21:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86799 * 120.00077 * 2 1 4 4 H 1.48492 * 109.47153 * 270.00202 * 3 2 1 5 5 H 1.48505 * 109.47028 * 30.00057 * 3 2 1 6 6 H 1.48499 * 109.47075 * 149.99604 * 3 2 1 7 7 C 1.37876 * 119.99632 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99530 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00105 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.46900 * 179.97438 * 9 7 2 11 11 C 1.34780 * 120.00017 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99699 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00301 * 179.97438 * 11 10 9 14 14 O 1.42899 * 109.47140 * 180.02562 * 13 11 10 15 15 C 1.42903 * 113.99629 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.46726 * 180.02562 * 15 14 13 17 17 C 1.53003 * 117.49371 * 243.61887 * 16 15 14 18 18 C 1.53001 * 117.49608 * 174.99962 * 16 15 14 19 19 H 0.97004 * 119.99397 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.46928 * 60.00342 * 9 7 2 21 21 H 1.08995 * 109.47458 * 300.00099 * 9 7 2 22 22 H 0.97000 * 120.00405 * 0.02562 * 10 9 7 23 23 H 1.09007 * 109.46405 * 60.00333 * 13 11 10 24 24 H 1.09004 * 109.47198 * 300.00818 * 13 11 10 25 25 H 1.09002 * 109.47382 * 59.99956 * 15 14 13 26 26 H 1.09001 * 109.46938 * 299.99942 * 15 14 13 27 27 H 1.08995 * 115.55630 * 29.32572 * 16 15 14 28 28 H 1.08998 * 117.50656 * 0.02562 * 17 16 15 29 29 H 1.09001 * 117.49674 * 145.02590 * 17 16 15 30 30 H 1.09003 * 117.49710 * 214.97494 * 18 16 15 31 31 H 1.08998 * 117.50185 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 1.7537 -4.8834 -0.0015 12 8 0.5613 -5.1049 -0.0006 13 6 2.7330 -6.0289 -0.0033 14 8 2.0184 -7.2664 -0.0032 15 6 2.8584 -8.4225 -0.0043 16 6 1.9911 -9.6829 -0.0047 17 6 2.0880 -10.6074 1.2105 18 6 2.7044 -11.0312 -0.1242 19 1 -0.4849 0.8401 0.0004 20 1 0.6241 -2.5566 -0.8903 21 1 0.6247 -2.5571 0.8896 22 1 3.1567 -3.4355 -0.0021 23 1 3.3609 -5.9714 0.8858 24 1 3.3584 -5.9708 -0.8942 25 1 3.4884 -8.4148 0.8852 26 1 3.4869 -8.4140 -0.8948 27 1 1.0181 -9.5840 -0.4858 28 1 2.7693 -10.3176 2.0105 29 1 1.1786 -11.1169 1.5291 30 1 2.2004 -11.8193 -0.6836 31 1 3.7915 -11.0202 -0.2029 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388227752.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:52 Heat of formation + Delta-G solvation = -67.076866 kcal Electronic energy + Delta-G solvation = -13463.086010 eV Core-core repulsion = 10938.312656 eV Total energy + Delta-G solvation = -2524.773353 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.08289 -38.01672 -36.31823 -34.14291 -32.33819 -29.13838 -27.21754 -25.67368 -22.59553 -22.44664 -20.89357 -19.73011 -17.26052 -16.89387 -16.14720 -15.73721 -15.39870 -14.87690 -14.40871 -14.07231 -14.01669 -13.01682 -12.60501 -12.26400 -11.91981 -11.76430 -11.59229 -11.18064 -10.97711 -10.88372 -10.64415 -10.37610 -10.31270 -9.53892 -9.40103 -8.99017 -8.73841 -7.89204 -6.16515 -4.23758 3.21653 3.24396 3.30860 3.33406 3.34738 3.66450 4.25983 4.41792 4.67756 4.70165 4.99639 5.15517 5.17309 5.19406 5.36768 5.38682 5.42219 5.52472 5.53758 5.68039 5.88979 6.05347 7.11387 7.32861 7.43574 7.52057 7.67238 7.96653 8.60683 8.78206 9.09511 9.42758 10.93714 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.103908 B = 0.004376 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 269.403852 B = 6397.078505 C = 6569.435621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.712 5.712 11 C 0.498 3.502 12 O -0.536 6.536 13 C 0.044 3.956 14 O -0.359 6.359 15 C 0.090 3.910 16 C -0.151 4.151 17 C -0.178 4.178 18 C -0.175 4.175 19 H 0.266 0.734 20 H 0.028 0.972 21 H 0.028 0.972 22 H 0.391 0.609 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.116 0.884 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.151 -15.991 0.332 18.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.362 5.362 11 C 0.281 3.719 12 O -0.413 6.413 13 C -0.036 4.036 14 O -0.277 6.277 15 C 0.013 3.987 16 C -0.169 4.169 17 C -0.214 4.214 18 C -0.212 4.212 19 H 0.076 0.924 20 H 0.046 0.954 21 H 0.046 0.954 22 H 0.223 0.777 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.134 0.866 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.893 -16.016 0.338 17.859 hybrid contribution 1.207 1.039 0.000 1.593 sum 9.101 -14.977 0.338 17.529 Atomic orbital electron populations 1.69986 1.06118 1.27331 1.48798 1.24966 0.94932 0.99480 0.94695 0.86394 0.79586 0.82582 0.78213 1.20455 1.20997 1.19746 1.21219 0.93277 0.90394 1.53327 0.91843 1.19129 0.88264 0.81709 0.97894 1.46372 1.11207 1.05657 1.72991 1.20093 0.89376 0.84029 0.78354 1.90687 1.16637 1.84636 1.49323 1.22297 0.94493 0.84895 1.01898 1.88031 1.32195 1.12143 1.95336 1.22037 0.92087 0.84535 0.99995 1.22129 1.01825 0.89623 1.03324 1.23065 1.03130 1.03613 0.91639 1.22969 1.00099 0.97315 1.00864 0.92413 0.95423 0.95413 0.77693 0.90843 0.90809 0.93204 0.92881 0.86594 0.88687 0.88597 0.88462 0.88748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.91 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.74 5.43 -5.19 -0.03 6.71 16 10 N -0.71 -15.20 5.55 -61.48 -0.34 -15.54 16 11 C 0.50 10.48 7.91 -10.98 -0.09 10.39 16 12 O -0.54 -13.97 16.50 -14.35 -0.24 -14.21 16 13 C 0.04 0.67 6.42 36.01 0.23 0.90 16 14 O -0.36 -5.94 9.88 -55.14 -0.54 -6.49 16 15 C 0.09 1.06 6.22 37.16 0.23 1.29 16 16 C -0.15 -1.65 6.06 -90.62 -0.55 -2.20 16 17 C -0.18 -1.63 10.18 -26.73 -0.27 -1.91 16 18 C -0.18 -1.45 10.25 -26.73 -0.27 -1.72 16 19 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 20 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 21 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 22 H 0.39 6.92 8.32 -40.82 -0.34 6.58 16 23 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.05 0.51 7.88 -51.93 -0.41 0.10 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.09 0.81 8.03 -51.93 -0.42 0.40 16 29 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 276.67 15.07 4.17 4.17 Total: -1.00 -33.44 276.67 -6.91 -40.34 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -4.50 Total: 1.41 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -1.16 Total: 0.00 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: 0.40 Total: -41.05 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.78 Total: -20.69 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.44 -6.91 -40.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388227752.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.734 kcal (2) G-P(sol) polarization free energy of solvation -33.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds