Wall clock time and date at job start Sun Mar 29 2020 21:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86799 * 120.00077 * 2 1 4 4 H 1.48492 * 109.47153 * 270.00202 * 3 2 1 5 5 H 1.48505 * 109.47028 * 30.00057 * 3 2 1 6 6 H 1.48499 * 109.47075 * 149.99604 * 3 2 1 7 7 C 1.37876 * 119.99632 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99530 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00105 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.46900 * 179.97438 * 9 7 2 11 11 C 1.34780 * 120.00017 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99699 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00301 * 179.97438 * 11 10 9 14 14 O 1.42899 * 109.47140 * 180.02562 * 13 11 10 15 15 C 1.42903 * 113.99629 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.46726 * 180.02562 * 15 14 13 17 17 C 1.53003 * 117.49371 * 243.61887 * 16 15 14 18 18 C 1.53001 * 117.49608 * 174.99962 * 16 15 14 19 19 H 0.97004 * 119.99397 * 359.97438 * 1 2 3 20 20 H 1.08996 * 109.46928 * 60.00342 * 9 7 2 21 21 H 1.08995 * 109.47458 * 300.00099 * 9 7 2 22 22 H 0.97000 * 120.00405 * 0.02562 * 10 9 7 23 23 H 1.09007 * 109.46405 * 60.00333 * 13 11 10 24 24 H 1.09004 * 109.47198 * 300.00818 * 13 11 10 25 25 H 1.09002 * 109.47382 * 59.99956 * 15 14 13 26 26 H 1.09001 * 109.46938 * 299.99942 * 15 14 13 27 27 H 1.08995 * 115.55630 * 29.32572 * 16 15 14 28 28 H 1.08998 * 117.50656 * 0.02562 * 17 16 15 29 29 H 1.09001 * 117.49674 * 145.02590 * 17 16 15 30 30 H 1.09003 * 117.49710 * 214.97494 * 18 16 15 31 31 H 1.08998 * 117.50185 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 1.7537 -4.8834 -0.0015 12 8 0.5613 -5.1049 -0.0006 13 6 2.7330 -6.0289 -0.0033 14 8 2.0184 -7.2664 -0.0032 15 6 2.8584 -8.4225 -0.0043 16 6 1.9911 -9.6829 -0.0047 17 6 2.0880 -10.6074 1.2105 18 6 2.7044 -11.0312 -0.1242 19 1 -0.4849 0.8401 0.0004 20 1 0.6241 -2.5566 -0.8903 21 1 0.6247 -2.5571 0.8896 22 1 3.1567 -3.4355 -0.0021 23 1 3.3609 -5.9714 0.8858 24 1 3.3584 -5.9708 -0.8942 25 1 3.4884 -8.4148 0.8852 26 1 3.4869 -8.4140 -0.8948 27 1 1.0181 -9.5840 -0.4858 28 1 2.7693 -10.3176 2.0105 29 1 1.1786 -11.1169 1.5291 30 1 2.2004 -11.8193 -0.6836 31 1 3.7915 -11.0202 -0.2029 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388227752.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:52 Heat of formation + Delta-G solvation = -91.068281 kcal Electronic energy + Delta-G solvation = -13464.126356 eV Core-core repulsion = 10938.312656 eV Total energy + Delta-G solvation = -2525.813699 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.65624 -39.11750 -37.32465 -36.13435 -34.38197 -30.64913 -28.77183 -26.99018 -24.47007 -23.23765 -21.85689 -21.38005 -19.03621 -18.07200 -17.53307 -17.31182 -16.81738 -16.45401 -15.84832 -15.59146 -15.13089 -14.57016 -14.12593 -14.04674 -13.40683 -13.27510 -12.92952 -12.70500 -12.37092 -12.22502 -12.05157 -11.49559 -11.37620 -11.24222 -10.81083 -10.75552 -10.48652 -9.87913 -8.29206 -6.46450 1.44098 1.46983 1.58160 1.68128 1.98550 2.39561 2.84057 3.05763 3.15145 3.85212 3.95114 3.97826 4.15912 4.21969 4.31018 4.36865 4.55174 4.72277 4.78641 5.02021 5.09062 5.21622 5.23042 5.26073 5.45794 5.65469 5.82945 6.16708 6.64149 6.87880 7.22748 7.45611 8.83260 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.103908 B = 0.004376 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 269.403852 B = 6397.078505 C = 6569.435621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.989 3.011 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.253 1.253 7 C -0.556 4.556 8 H 0.088 0.912 9 C 0.265 3.735 10 N -0.702 5.702 11 C 0.491 3.509 12 O -0.596 6.596 13 C 0.058 3.942 14 O -0.400 6.400 15 C 0.088 3.912 16 C -0.181 4.181 17 C -0.181 4.181 18 C -0.152 4.152 19 H 0.269 0.731 20 H -0.013 1.013 21 H -0.013 1.013 22 H 0.412 0.588 23 H 0.112 0.888 24 H 0.112 0.888 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.425 -16.353 0.404 20.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.811 3.189 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.177 1.177 7 C -0.593 4.593 8 H 0.106 0.894 9 C 0.142 3.858 10 N -0.354 5.354 11 C 0.277 3.723 12 O -0.477 6.477 13 C -0.021 4.021 14 O -0.320 6.320 15 C 0.012 3.988 16 C -0.199 4.199 17 C -0.217 4.217 18 C -0.189 4.189 19 H 0.078 0.922 20 H 0.005 0.995 21 H 0.005 0.995 22 H 0.249 0.751 23 H 0.129 0.871 24 H 0.130 0.870 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.110 0.890 28 H 0.122 0.878 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.235 -16.412 0.409 19.893 hybrid contribution 0.140 1.048 -0.023 1.058 sum 11.375 -15.364 0.386 19.120 Atomic orbital electron populations 1.70158 1.08400 1.28621 1.49946 1.26125 0.95794 1.04089 0.93812 0.85102 0.78479 0.76683 0.78605 1.19577 1.21088 1.17678 1.21623 0.94455 0.90319 1.52942 0.89401 1.18581 0.88761 0.84297 0.94150 1.46062 1.11464 1.04939 1.72910 1.21291 0.89756 0.85108 0.76100 1.90657 1.19798 1.85538 1.51755 1.22241 0.92336 0.82108 1.05411 1.87988 1.34645 1.13547 1.95773 1.22282 0.91942 0.82778 1.01805 1.22141 1.01576 0.90937 1.05275 1.23172 1.03610 1.02957 0.92005 1.23075 1.01004 0.95271 0.99568 0.92234 0.99502 0.99486 0.75134 0.87062 0.87009 0.91234 0.90950 0.89015 0.87807 0.88582 0.87559 0.86907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.83 13.29 21.45 0.28 -56.54 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.99 42.15 29.54 68.60 2.03 44.17 16 4 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.29 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 7 C -0.56 -30.23 9.28 25.60 0.24 -29.99 16 8 H 0.09 4.24 7.60 -2.91 -0.02 4.22 16 9 C 0.26 14.81 5.43 85.63 0.46 15.27 16 10 N -0.70 -29.91 5.55 -466.80 -2.59 -32.50 16 11 C 0.49 20.71 7.91 87.66 0.69 21.40 16 12 O -0.60 -32.49 16.50 16.00 0.26 -32.23 16 13 C 0.06 1.62 6.42 71.24 0.46 2.08 16 14 O -0.40 -12.79 9.88 -129.94 -1.28 -14.07 16 15 C 0.09 1.85 6.22 71.98 0.45 2.30 16 16 C -0.18 -3.78 6.06 -10.79 -0.07 -3.84 16 17 C -0.18 -3.03 10.18 30.60 0.31 -2.71 16 18 C -0.15 -2.13 10.25 30.60 0.31 -1.82 16 19 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 20 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 21 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 22 H 0.41 13.80 8.32 -92.71 -0.77 13.03 16 23 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 24 H 0.11 2.30 8.14 -2.38 -0.02 2.28 16 25 H 0.07 1.18 7.88 -2.39 -0.02 1.16 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.10 1.54 8.03 -2.39 -0.02 1.52 16 29 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -76.60 276.67 2.37 -74.23 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.34 Total: 13.73 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 3.32 Total: 3.21 kcal Atomic # 7 Polarization: -86.74 SS G_CDS: -2.30 Total: -89.05 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -1.02 Total: -46.29 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -76.60 2.37 -74.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388227752.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.835 kcal (2) G-P(sol) polarization free energy of solvation -76.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds