Wall clock time and date at job start Sun Mar 29 2020 22:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47463 * 2 1 4 4 C 1.50702 * 112.99967 * 295.80733 * 3 2 1 5 5 O 1.21292 * 120.00312 * 114.31626 * 4 3 2 6 6 N 1.34778 * 119.99796 * 294.32511 * 4 3 2 7 7 C 1.46497 * 119.99838 * 354.98018 * 6 4 3 8 8 C 1.37094 * 120.00057 * 174.98833 * 6 4 3 9 9 H 1.08001 * 119.99836 * 2.54371 * 8 6 4 10 10 C 1.38944 * 119.99988 * 182.54712 * 8 6 4 11 11 N 1.31415 * 120.00352 * 351.61424 * 10 8 6 12 12 Si 1.86807 * 120.00010 * 171.34577 * 10 8 6 13 13 H 1.48504 * 109.46909 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47468 * 119.99805 * 12 10 8 15 15 H 1.48500 * 109.46888 * 239.99705 * 12 10 8 16 16 C 1.54034 * 113.92688 * 67.73833 * 3 2 1 17 17 O 1.44177 * 85.51919 * 136.82024 * 16 3 2 18 18 C 1.44175 * 93.33709 * 335.80758 * 17 16 3 19 19 H 1.08998 * 109.46833 * 65.13556 * 1 2 3 20 20 H 1.08994 * 109.47258 * 185.13993 * 1 2 3 21 21 H 1.09003 * 109.46970 * 305.14176 * 1 2 3 22 22 H 1.08999 * 109.47492 * 239.99857 * 2 1 3 23 23 H 1.09005 * 109.46745 * 119.99787 * 2 1 3 24 24 H 1.09003 * 109.47360 * 241.76013 * 7 6 4 25 25 H 1.08998 * 109.47755 * 1.76317 * 7 6 4 26 26 H 1.09008 * 109.46947 * 121.76109 * 7 6 4 27 27 H 0.96999 * 119.99895 * 179.97438 * 11 10 8 28 28 H 1.09002 * 113.86744 * 250.97065 * 16 3 2 29 29 H 1.08996 * 113.86669 * 22.66823 * 16 3 2 30 30 H 1.09002 * 113.86425 * 270.04284 * 18 17 16 31 31 H 1.09001 * 113.98266 * 138.35588 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6670 2.1989 -1.2489 5 8 0.9065 3.1415 -1.1826 6 7 2.1783 1.8280 -2.4394 7 6 3.1803 0.7613 -2.5060 8 6 1.7608 2.4489 -3.5882 9 1 1.0530 3.2630 -3.5354 10 6 2.2482 2.0309 -4.8204 11 7 3.2280 1.1569 -4.8773 12 14 1.5058 2.7057 -6.3962 13 1 0.4203 3.6624 -6.0619 14 1 2.5570 3.4031 -7.1797 15 1 0.9496 1.5875 -7.1997 16 6 1.7455 2.2093 1.3030 17 8 3.0964 2.6993 1.1869 18 6 3.5244 1.5774 0.3889 19 1 -0.3633 0.4321 -0.9324 20 1 -0.3633 -1.0235 0.0921 21 1 -0.3633 0.5915 0.8404 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 4.1091 1.1602 -2.9138 25 1 3.3615 0.3700 -1.5049 26 1 2.8158 -0.0400 -3.1488 27 1 3.5679 0.8649 -5.7376 28 1 0.9850 2.9830 1.1971 29 1 1.5828 1.5648 2.1668 30 1 3.9050 0.7399 0.9736 31 1 4.1753 1.8478 -0.4426 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388291106.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:25 Heat of formation + Delta-G solvation = -33.029148 kcal Electronic energy + Delta-G solvation = -15229.272891 eV Core-core repulsion = 12705.975957 eV Total energy + Delta-G solvation = -2523.296934 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.68327 -37.56324 -34.72097 -33.54924 -31.46235 -28.32464 -26.58249 -25.78620 -24.62106 -22.66922 -21.33818 -18.14198 -16.95857 -16.00634 -15.71455 -15.41626 -14.97813 -14.20485 -14.08266 -13.74407 -13.22878 -12.73707 -12.25929 -12.12692 -11.71461 -11.64609 -11.50518 -11.03090 -10.83244 -10.70891 -10.34593 -10.16420 -10.13462 -9.86325 -9.34579 -9.04109 -8.35769 -7.88102 -6.26634 -3.81386 3.12756 3.23941 3.31446 3.71613 4.06436 4.23142 4.54914 4.82032 5.11158 5.30199 5.48391 5.53115 5.55136 5.68410 5.86002 6.00474 6.07557 6.17832 6.29302 6.35150 6.41779 6.50975 6.57401 6.65559 7.05841 7.37159 7.55114 8.05324 8.47089 9.17355 9.43339 9.96584 10.68139 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.041987 B = 0.010061 C = 0.009993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.715363 B = 2782.341470 C = 2801.285627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.134 4.134 4 C 0.467 3.533 5 O -0.589 6.589 6 N -0.443 5.443 7 C 0.110 3.890 8 C -0.299 4.299 9 H 0.105 0.895 10 C 0.026 3.974 11 N -0.888 5.888 12 Si 0.930 3.070 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.281 1.281 16 C 0.057 3.943 17 O -0.379 6.379 18 C 0.043 3.957 19 H 0.061 0.939 20 H 0.051 0.949 21 H 0.052 0.948 22 H 0.077 0.923 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.028 0.972 26 H 0.068 0.932 27 H 0.265 0.735 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.061 -5.287 6.910 8.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.138 4.138 4 C 0.254 3.746 5 O -0.474 6.474 6 N -0.161 5.161 7 C -0.033 4.033 8 C -0.427 4.427 9 H 0.123 0.877 10 C -0.175 4.175 11 N -0.530 5.530 12 Si 0.756 3.244 13 H -0.192 1.192 14 H -0.207 1.207 15 H -0.206 1.206 16 C -0.020 4.020 17 O -0.298 6.298 18 C -0.034 4.034 19 H 0.080 0.920 20 H 0.070 0.930 21 H 0.071 0.929 22 H 0.095 0.905 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.046 0.954 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.119 0.881 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.184 -4.687 6.834 8.289 hybrid contribution -0.179 -0.087 -0.981 1.001 sum -0.363 -4.774 5.852 7.561 Atomic orbital electron populations 1.21676 0.95261 1.00848 1.02673 1.21646 0.96898 0.94191 1.02463 1.23700 0.96340 0.96915 0.96865 1.18906 0.85763 0.86676 0.83222 1.90497 1.40581 1.30755 1.85582 1.43604 1.35407 1.31952 1.05104 1.21961 0.93356 0.91344 0.96672 1.19875 1.24107 1.16021 0.82653 0.87718 1.25297 0.96024 0.96737 0.99479 1.70173 1.24957 1.32271 1.25553 0.85796 0.79043 0.78635 0.80883 1.19226 1.20727 1.20640 1.23886 0.86236 0.97430 0.94484 1.89652 1.25047 1.40845 1.74210 1.24177 0.95695 0.89334 0.94230 0.92034 0.93019 0.92873 0.90463 0.91794 0.91171 0.95351 0.91363 0.92423 0.88099 0.90549 0.90203 0.88761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.61 37.16 0.36 -1.93 16 2 C -0.11 -1.79 4.97 -26.73 -0.13 -1.93 16 3 C -0.13 -2.54 0.30 -154.58 -0.05 -2.59 16 4 C 0.47 11.54 5.85 -10.98 -0.06 11.47 16 5 O -0.59 -16.64 15.55 5.55 0.09 -16.55 16 6 N -0.44 -11.42 3.03 -122.19 -0.37 -11.79 16 7 C 0.11 2.47 6.88 59.85 0.41 2.88 16 8 C -0.30 -8.39 9.57 -14.94 -0.14 -8.54 16 9 H 0.11 3.10 7.18 -52.49 -0.38 2.73 16 10 C 0.03 0.69 5.43 -17.47 -0.09 0.59 16 11 N -0.89 -23.20 9.48 55.50 0.53 -22.67 16 12 Si 0.93 20.87 29.56 -169.99 -5.03 15.85 16 13 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 16 C 0.06 1.00 7.57 37.61 0.28 1.29 16 17 O -0.38 -7.49 12.40 -35.23 -0.44 -7.93 16 18 C 0.04 0.74 6.91 37.60 0.26 1.00 16 19 H 0.06 1.14 7.71 -51.93 -0.40 0.74 16 20 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.05 0.77 7.57 -51.93 -0.39 0.38 16 22 H 0.08 1.27 5.99 -51.93 -0.31 0.96 16 23 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 24 H 0.07 1.68 7.07 -51.93 -0.37 1.31 16 25 H 0.03 0.53 3.59 -51.93 -0.19 0.34 16 26 H 0.07 1.61 7.03 -51.92 -0.37 1.24 16 27 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 28 H 0.10 1.94 7.33 -51.93 -0.38 1.56 16 29 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 30 H 0.08 1.09 8.07 -51.93 -0.42 0.67 16 31 H 0.09 1.73 6.90 -51.93 -0.36 1.38 16 LS Contribution 249.53 15.07 3.76 3.76 Total: -1.00 -30.97 249.53 -4.58 -35.56 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -3.96 Total: 1.53 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 0.83 Total: 2.25 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.16 Total: -34.46 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.35 Total: -24.48 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.97 -4.58 -35.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388291106.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.527 kcal (2) G-P(sol) polarization free energy of solvation -30.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds