Wall clock time and date at job start Sun Mar 29 2020 22:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47463 * 2 1 4 4 C 1.50702 * 112.99967 * 295.80733 * 3 2 1 5 5 O 1.21292 * 120.00312 * 114.31626 * 4 3 2 6 6 N 1.34778 * 119.99796 * 294.32511 * 4 3 2 7 7 C 1.46497 * 119.99838 * 354.98018 * 6 4 3 8 8 C 1.37094 * 120.00057 * 174.98833 * 6 4 3 9 9 H 1.08001 * 119.99836 * 2.54371 * 8 6 4 10 10 C 1.38944 * 119.99988 * 182.54712 * 8 6 4 11 11 N 1.31415 * 120.00352 * 351.61424 * 10 8 6 12 12 Si 1.86807 * 120.00010 * 171.34577 * 10 8 6 13 13 H 1.48504 * 109.46909 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47468 * 119.99805 * 12 10 8 15 15 H 1.48500 * 109.46888 * 239.99705 * 12 10 8 16 16 C 1.54034 * 113.92688 * 67.73833 * 3 2 1 17 17 O 1.44177 * 85.51919 * 136.82024 * 16 3 2 18 18 C 1.44175 * 93.33709 * 335.80758 * 17 16 3 19 19 H 1.08998 * 109.46833 * 65.13556 * 1 2 3 20 20 H 1.08994 * 109.47258 * 185.13993 * 1 2 3 21 21 H 1.09003 * 109.46970 * 305.14176 * 1 2 3 22 22 H 1.08999 * 109.47492 * 239.99857 * 2 1 3 23 23 H 1.09005 * 109.46745 * 119.99787 * 2 1 3 24 24 H 1.09003 * 109.47360 * 241.76013 * 7 6 4 25 25 H 1.08998 * 109.47755 * 1.76317 * 7 6 4 26 26 H 1.09008 * 109.46947 * 121.76109 * 7 6 4 27 27 H 0.96999 * 119.99895 * 179.97438 * 11 10 8 28 28 H 1.09002 * 113.86744 * 250.97065 * 16 3 2 29 29 H 1.08996 * 113.86669 * 22.66823 * 16 3 2 30 30 H 1.09002 * 113.86425 * 270.04284 * 18 17 16 31 31 H 1.09001 * 113.98266 * 138.35588 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6670 2.1989 -1.2489 5 8 0.9065 3.1415 -1.1826 6 7 2.1783 1.8280 -2.4394 7 6 3.1803 0.7613 -2.5060 8 6 1.7608 2.4489 -3.5882 9 1 1.0530 3.2630 -3.5354 10 6 2.2482 2.0309 -4.8204 11 7 3.2280 1.1569 -4.8773 12 14 1.5058 2.7057 -6.3962 13 1 0.4203 3.6624 -6.0619 14 1 2.5570 3.4031 -7.1797 15 1 0.9496 1.5875 -7.1997 16 6 1.7455 2.2093 1.3030 17 8 3.0964 2.6993 1.1869 18 6 3.5244 1.5774 0.3889 19 1 -0.3633 0.4321 -0.9324 20 1 -0.3633 -1.0235 0.0921 21 1 -0.3633 0.5915 0.8404 22 1 1.8934 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 4.1091 1.1602 -2.9138 25 1 3.3615 0.3700 -1.5049 26 1 2.8158 -0.0400 -3.1488 27 1 3.5679 0.8649 -5.7376 28 1 0.9850 2.9830 1.1971 29 1 1.5828 1.5648 2.1668 30 1 3.9050 0.7399 0.9736 31 1 4.1753 1.8478 -0.4426 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388291106.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:25 Heat of formation + Delta-G solvation = -55.284180 kcal Electronic energy + Delta-G solvation = -15230.237941 eV Core-core repulsion = 12705.975957 eV Total energy + Delta-G solvation = -2524.261984 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.21733 -39.39151 -36.75064 -34.96756 -33.43910 -29.79882 -28.32938 -27.30225 -26.55062 -23.97091 -23.03694 -19.84654 -18.98523 -17.65234 -17.23479 -17.05648 -16.58610 -15.93990 -15.73995 -15.55704 -14.81502 -14.17126 -13.98160 -13.55336 -13.50499 -13.35869 -12.98020 -12.78732 -12.63734 -12.25604 -12.15850 -12.01140 -11.53077 -11.22736 -11.04911 -10.79519 -10.25774 -9.91057 -8.28525 -5.93344 1.31970 1.37757 1.51603 1.92730 2.22236 2.71420 2.93157 3.11709 3.26567 3.80706 4.02394 4.19896 4.33239 4.40156 4.53398 4.58171 4.67120 4.77896 4.95794 5.04139 5.06588 5.15705 5.20691 5.27076 5.39361 5.41563 5.49727 6.01066 6.44634 7.13351 7.46357 7.99746 8.63296 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.041987 B = 0.010061 C = 0.009993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.715363 B = 2782.341470 C = 2801.285627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.141 4.141 4 C 0.456 3.544 5 O -0.639 6.639 6 N -0.458 5.458 7 C 0.124 3.876 8 C -0.344 4.344 9 H 0.072 0.928 10 C -0.002 4.002 11 N -0.894 5.894 12 Si 0.991 3.009 13 H -0.278 1.278 14 H -0.270 1.270 15 H -0.266 1.266 16 C 0.063 3.937 17 O -0.409 6.409 18 C 0.050 3.950 19 H 0.015 0.985 20 H 0.081 0.919 21 H 0.061 0.939 22 H 0.068 0.932 23 H 0.114 0.886 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.273 0.727 28 H 0.073 0.927 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.634 -7.293 7.967 10.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.144 4.144 4 C 0.245 3.755 5 O -0.528 6.528 6 N -0.176 5.176 7 C -0.018 4.018 8 C -0.472 4.472 9 H 0.090 0.910 10 C -0.203 4.203 11 N -0.534 5.534 12 Si 0.814 3.186 13 H -0.203 1.203 14 H -0.195 1.195 15 H -0.190 1.190 16 C -0.013 4.013 17 O -0.328 6.328 18 C -0.027 4.027 19 H 0.035 0.965 20 H 0.100 0.900 21 H 0.080 0.920 22 H 0.087 0.913 23 H 0.133 0.867 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.147 0.853 30 H 0.152 0.848 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.542 -6.728 7.890 10.383 hybrid contribution -0.396 0.556 -1.300 1.468 sum 0.146 -6.172 6.590 9.031 Atomic orbital electron populations 1.21676 0.95533 1.02501 1.00640 1.21701 0.96679 0.91805 1.04442 1.23666 0.98301 0.98328 0.94126 1.20033 0.84456 0.86256 0.84751 1.90449 1.42542 1.33067 1.86699 1.43846 1.36108 1.32536 1.05061 1.21829 0.91410 0.89824 0.98754 1.19766 1.25580 1.17105 0.84768 0.90964 1.26011 0.95969 0.96733 1.01604 1.70257 1.24590 1.31888 1.26680 0.84919 0.78184 0.78254 0.77235 1.20329 1.19509 1.19035 1.24056 0.84803 0.96999 0.95456 1.89630 1.26051 1.42542 1.74594 1.24399 0.93946 0.90087 0.94224 0.96536 0.89978 0.91984 0.91312 0.86735 0.93088 0.91160 0.92761 0.91693 0.90846 0.85337 0.84788 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.23 9.61 71.98 0.69 -3.54 16 2 C -0.11 -3.03 4.97 30.59 0.15 -2.88 16 3 C -0.14 -5.06 0.30 -52.23 -0.02 -5.08 16 4 C 0.46 23.10 5.85 87.66 0.51 23.61 16 5 O -0.64 -38.05 15.55 -3.07 -0.05 -38.09 16 6 N -0.46 -24.32 3.03 -658.89 -1.99 -26.31 16 7 C 0.12 5.56 6.88 127.77 0.88 6.44 16 8 C -0.34 -20.21 9.57 84.04 0.80 -19.40 16 9 H 0.07 4.59 7.18 -2.91 -0.02 4.57 16 10 C 0.00 -0.12 5.43 84.92 0.46 0.34 16 11 N -0.89 -46.71 9.48 21.66 0.21 -46.50 16 12 Si 0.99 43.21 29.56 68.60 2.03 45.24 16 13 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 14 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 15 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 16 C 0.06 2.09 7.57 72.27 0.55 2.64 16 17 O -0.41 -15.39 12.40 -148.98 -1.85 -17.24 16 18 C 0.05 1.58 6.91 72.27 0.50 2.08 16 19 H 0.02 0.59 7.71 -2.39 -0.02 0.57 16 20 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 21 H 0.06 1.66 7.57 -2.39 -0.02 1.64 16 22 H 0.07 2.05 5.99 -2.39 -0.01 2.03 16 23 H 0.11 2.13 8.10 -2.38 -0.02 2.11 16 24 H 0.05 2.45 7.07 -2.39 -0.02 2.43 16 25 H 0.07 2.49 3.59 -2.39 -0.01 2.48 16 26 H 0.05 2.55 7.03 -2.38 -0.02 2.53 16 27 H 0.27 13.26 8.31 -92.71 -0.77 12.49 16 28 H 0.07 2.82 7.33 -2.39 -0.02 2.81 16 29 H 0.13 2.93 8.10 -2.39 -0.02 2.91 16 30 H 0.13 2.84 8.07 -2.39 -0.02 2.82 16 31 H 0.08 2.67 6.90 -2.39 -0.02 2.65 16 Total: -1.00 -71.38 249.53 4.00 -67.38 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 1.13 Total: 11.31 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 4.53 Total: 4.22 kcal Atomic # 7 Polarization: -71.03 SS G_CDS: -1.79 Total: -72.82 kcal Atomic # 8 Polarization: -53.44 SS G_CDS: -1.89 Total: -55.34 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -71.38 4.00 -67.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388291106.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.097 kcal (2) G-P(sol) polarization free energy of solvation -71.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds