Wall clock time and date at job start Sun Mar 29 2020 21:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86798 * 120.00284 * 2 1 4 4 H 1.48503 * 109.47376 * 270.00334 * 3 2 1 5 5 H 1.48502 * 109.46912 * 30.00215 * 3 2 1 6 6 H 1.48493 * 109.47455 * 149.99876 * 3 2 1 7 7 C 1.40055 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99970 * 180.02562 * 7 2 1 9 9 C 1.46376 * 119.99757 * 359.97438 * 7 2 1 10 10 O 1.21683 * 120.00125 * 0.02562 * 9 7 2 11 11 N 1.34773 * 119.99937 * 180.02562 * 9 7 2 12 12 C 1.46499 * 120.00088 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47251 * 179.97438 * 12 11 9 14 14 O 1.42899 * 109.46892 * 65.00133 * 13 12 11 15 15 C 1.42902 * 113.99903 * 180.02562 * 14 13 12 16 16 C 1.53786 * 113.61284 * 209.99760 * 15 14 13 17 17 C 1.53781 * 87.17350 * 220.06071 * 16 15 14 18 18 C 1.53782 * 87.08260 * 25.39213 * 17 16 15 19 19 H 0.97000 * 120.00121 * 0.02562 * 1 2 3 20 20 H 0.97006 * 119.99706 * 0.02562 * 11 9 7 21 21 H 1.08997 * 109.46958 * 60.00496 * 12 11 9 22 22 H 1.09002 * 109.47228 * 299.99806 * 12 11 9 23 23 H 1.08998 * 109.46970 * 305.00750 * 13 12 11 24 24 H 1.08997 * 109.47169 * 185.00074 * 13 12 11 25 25 H 1.08993 * 112.90736 * 341.24804 * 15 14 13 26 26 H 1.09002 * 113.61357 * 105.46987 * 16 15 14 27 27 H 1.09002 * 113.61608 * 334.65149 * 16 15 14 28 28 H 1.09001 * 113.61695 * 139.93969 * 17 16 15 29 29 H 1.08997 * 113.61223 * 270.84552 * 17 16 15 30 30 H 1.08997 * 113.61668 * 89.11298 * 18 17 16 31 31 H 1.08998 * 113.61674 * 219.93807 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4382 2.6526 0.7001 6 1 3.5382 1.4401 0.7000 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0001 9 6 1.2750 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9489 -3.6477 -0.0005 12 6 1.2164 -4.9164 -0.0011 13 6 2.2106 -6.0794 -0.0016 14 8 2.9528 -6.0720 1.2194 15 6 3.9152 -7.1235 1.3210 16 6 4.1728 -7.5854 2.7651 17 6 5.6604 -7.6829 2.3877 18 6 5.3736 -6.6304 1.3038 19 1 -0.4850 0.8400 -0.0004 20 1 2.9189 -3.6477 -0.0002 21 1 0.5901 -4.9740 -0.8914 22 1 0.5894 -4.9744 0.8886 23 1 2.8947 -5.9721 -0.8433 24 1 1.6685 -7.0207 -0.0916 25 1 3.7231 -7.9428 0.6283 26 1 3.7188 -8.5472 3.0034 27 1 3.9612 -6.8206 3.5124 28 1 6.3333 -7.3319 3.1700 29 1 5.9463 -8.6554 1.9871 30 1 5.4899 -5.6036 1.6506 31 1 5.8900 -6.8205 0.3630 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388307508.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:39 Heat of formation + Delta-G solvation = -72.891217 kcal Electronic energy + Delta-G solvation = -13931.610585 eV Core-core repulsion = 11406.585103 eV Total energy + Delta-G solvation = -2525.025483 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.20946 -37.30474 -35.91224 -33.09119 -32.15557 -28.73407 -25.97280 -25.67502 -24.56889 -22.06760 -19.66701 -19.59365 -17.18781 -17.04819 -15.57430 -15.35296 -15.09355 -14.60984 -13.95529 -13.65602 -13.16141 -12.56735 -12.45916 -12.25844 -11.80625 -11.68032 -11.20034 -11.10800 -10.85045 -10.74001 -10.63226 -10.41217 -10.35467 -10.15432 -9.27836 -8.79006 -7.53933 -7.38908 -6.11759 -4.56397 3.18463 3.24900 3.28897 3.86572 4.16552 4.54045 4.59981 4.66569 4.80220 4.82477 4.97315 5.22545 5.47646 5.57791 5.60642 5.73464 5.74991 5.78981 5.87122 5.90626 6.10352 6.24212 6.44739 6.59045 7.46319 7.50157 8.03390 8.19697 8.41503 9.09439 9.64128 10.67730 10.86866 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042447 B = 0.006140 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.489819 B = 4559.169443 C = 5033.926852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.554 3.446 10 O -0.584 6.584 11 N -0.762 5.762 12 C 0.134 3.866 13 C 0.053 3.947 14 O -0.365 6.365 15 C 0.059 3.941 16 C -0.138 4.138 17 C -0.142 4.142 18 C -0.157 4.157 19 H 0.267 0.733 20 H 0.382 0.618 21 H 0.062 0.938 22 H 0.055 0.945 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.025 -12.970 1.824 16.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.085 0.915 9 C 0.358 3.642 10 O -0.467 6.467 11 N -0.418 5.418 12 C 0.009 3.991 13 C -0.024 4.024 14 O -0.283 6.283 15 C 0.001 3.999 16 C -0.175 4.175 17 C -0.180 4.180 18 C -0.195 4.195 19 H 0.078 0.922 20 H 0.214 0.786 21 H 0.080 0.920 22 H 0.074 0.926 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.109 0.891 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.894 -12.737 1.971 15.660 hybrid contribution 0.967 0.531 -0.236 1.128 sum 9.861 -12.206 1.734 15.787 Atomic orbital electron populations 1.70028 1.07054 1.27126 1.35674 1.25708 0.94596 1.00241 0.92650 0.86383 0.80171 0.81479 0.78752 1.19792 1.20491 1.18942 1.20891 0.93566 0.89451 1.54295 0.91488 1.18214 0.87179 0.82533 0.76257 1.90587 1.14142 1.86969 1.55042 1.46028 1.08655 1.04602 1.82533 1.20902 0.93348 0.83614 1.01234 1.22881 0.94140 0.98614 0.86746 1.88081 1.51891 1.49999 1.38351 1.23715 0.88411 0.90341 0.97429 1.23203 0.95709 1.01552 0.97082 1.22648 0.96716 0.99309 0.99322 1.23513 0.96510 1.00318 0.99162 0.92200 0.78618 0.92007 0.92630 0.93164 0.92941 0.89995 0.91373 0.89067 0.90919 0.90308 0.88968 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.73 11.83 55.55 0.66 -23.08 16 2 C 0.09 2.51 5.50 -17.37 -0.10 2.42 16 3 Si 0.91 20.65 29.56 -169.99 -5.02 15.63 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 7 C -0.54 -15.97 9.54 -35.63 -0.34 -16.31 16 8 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 9 C 0.55 16.49 7.75 -12.99 -0.10 16.39 16 10 O -0.58 -19.63 15.02 5.20 0.08 -19.55 16 11 N -0.76 -18.11 5.50 -61.72 -0.34 -18.45 16 12 C 0.13 2.71 6.06 -4.04 -0.02 2.68 16 13 C 0.05 0.80 5.91 37.16 0.22 1.02 16 14 O -0.36 -5.84 10.30 -35.23 -0.36 -6.20 16 15 C 0.06 0.72 4.32 -25.82 -0.11 0.61 16 16 C -0.14 -1.48 7.91 -25.92 -0.20 -1.68 16 17 C -0.14 -1.31 8.08 -25.92 -0.21 -1.52 16 18 C -0.16 -1.73 7.92 -25.82 -0.20 -1.94 16 19 H 0.27 7.45 8.29 -40.82 -0.34 7.11 16 20 H 0.38 8.21 8.45 -40.82 -0.34 7.87 16 21 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 22 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.08 0.85 7.87 -51.93 -0.41 0.44 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 270.40 15.07 4.07 4.07 Total: -1.00 -35.11 270.40 -6.52 -41.62 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -4.53 Total: 4.28 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -1.07 Total: 1.67 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: 0.32 Total: -41.52 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.28 Total: -25.75 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -35.11 -6.52 -41.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388307508.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.270 kcal (2) G-P(sol) polarization free energy of solvation -35.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds