Wall clock time and date at job start Sun Mar 29 2020 21:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86798 * 120.00284 * 2 1 4 4 H 1.48503 * 109.47376 * 270.00334 * 3 2 1 5 5 H 1.48502 * 109.46912 * 30.00215 * 3 2 1 6 6 H 1.48493 * 109.47455 * 149.99876 * 3 2 1 7 7 C 1.40055 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99970 * 180.02562 * 7 2 1 9 9 C 1.46376 * 119.99757 * 359.97438 * 7 2 1 10 10 O 1.21683 * 120.00125 * 0.02562 * 9 7 2 11 11 N 1.34773 * 119.99937 * 180.02562 * 9 7 2 12 12 C 1.46499 * 120.00088 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47251 * 179.97438 * 12 11 9 14 14 O 1.42899 * 109.46892 * 65.00133 * 13 12 11 15 15 C 1.42902 * 113.99903 * 180.02562 * 14 13 12 16 16 C 1.53786 * 113.61284 * 209.99760 * 15 14 13 17 17 C 1.53781 * 87.17350 * 220.06071 * 16 15 14 18 18 C 1.53782 * 87.08260 * 25.39213 * 17 16 15 19 19 H 0.97000 * 120.00121 * 0.02562 * 1 2 3 20 20 H 0.97006 * 119.99706 * 0.02562 * 11 9 7 21 21 H 1.08997 * 109.46958 * 60.00496 * 12 11 9 22 22 H 1.09002 * 109.47228 * 299.99806 * 12 11 9 23 23 H 1.08998 * 109.46970 * 305.00750 * 13 12 11 24 24 H 1.08997 * 109.47169 * 185.00074 * 13 12 11 25 25 H 1.08993 * 112.90736 * 341.24804 * 15 14 13 26 26 H 1.09002 * 113.61357 * 105.46987 * 16 15 14 27 27 H 1.09002 * 113.61608 * 334.65149 * 16 15 14 28 28 H 1.09001 * 113.61695 * 139.93969 * 17 16 15 29 29 H 1.08997 * 113.61223 * 270.84552 * 17 16 15 30 30 H 1.08997 * 113.61668 * 89.11298 * 18 17 16 31 31 H 1.08998 * 113.61674 * 219.93807 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4382 2.6526 0.7001 6 1 3.5382 1.4401 0.7000 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0001 9 6 1.2750 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9489 -3.6477 -0.0005 12 6 1.2164 -4.9164 -0.0011 13 6 2.2106 -6.0794 -0.0016 14 8 2.9528 -6.0720 1.2194 15 6 3.9152 -7.1235 1.3210 16 6 4.1728 -7.5854 2.7651 17 6 5.6604 -7.6829 2.3877 18 6 5.3736 -6.6304 1.3038 19 1 -0.4850 0.8400 -0.0004 20 1 2.9189 -3.6477 -0.0002 21 1 0.5901 -4.9740 -0.8914 22 1 0.5894 -4.9744 0.8886 23 1 2.8947 -5.9721 -0.8433 24 1 1.6685 -7.0207 -0.0916 25 1 3.7231 -7.9428 0.6283 26 1 3.7188 -8.5472 3.0034 27 1 3.9612 -6.8206 3.5124 28 1 6.3333 -7.3319 3.1700 29 1 5.9463 -8.6554 1.9871 30 1 5.4899 -5.6036 1.6506 31 1 5.8900 -6.8205 0.3630 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388307508.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:39 Heat of formation + Delta-G solvation = -99.316749 kcal Electronic energy + Delta-G solvation = -13932.756482 eV Core-core repulsion = 11406.585103 eV Total energy + Delta-G solvation = -2526.171380 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.22127 -39.32052 -37.20310 -35.02978 -34.33436 -30.47007 -28.02589 -26.52284 -25.49080 -23.62665 -21.69313 -20.53653 -19.23140 -18.16102 -17.49151 -16.71861 -16.45150 -15.91218 -15.71062 -15.24066 -14.86340 -14.27158 -13.66387 -13.44676 -13.33664 -13.11704 -12.82510 -12.71023 -12.62152 -12.30908 -12.02624 -11.85294 -11.57601 -11.25035 -10.93008 -10.32810 -9.87531 -9.46990 -8.29052 -6.85725 1.40090 1.42311 1.57665 2.25652 2.46879 2.76632 3.17407 3.62542 3.71019 3.75442 3.94185 3.99473 4.16187 4.29856 4.42502 4.53535 4.76041 4.85591 4.88983 4.94286 5.06233 5.07171 5.27685 5.31714 5.45155 5.87742 6.22976 6.26740 6.42379 6.86465 7.55189 8.49011 8.67570 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.042447 B = 0.006140 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.489819 B = 4559.169443 C = 5033.926852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.027 3.973 3 Si 1.001 2.999 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.250 1.250 7 C -0.575 4.575 8 H 0.086 0.914 9 C 0.535 3.465 10 O -0.635 6.635 11 N -0.750 5.750 12 C 0.130 3.870 13 C 0.067 3.933 14 O -0.396 6.396 15 C 0.048 3.952 16 C -0.142 4.142 17 C -0.128 4.128 18 C -0.162 4.162 19 H 0.275 0.725 20 H 0.394 0.606 21 H 0.058 0.942 22 H 0.031 0.969 23 H 0.067 0.933 24 H 0.085 0.915 25 H 0.106 0.894 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.276 -13.441 1.575 18.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.187 4.187 3 Si 0.820 3.180 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.174 1.174 7 C -0.611 4.611 8 H 0.104 0.896 9 C 0.339 3.661 10 O -0.523 6.523 11 N -0.405 5.405 12 C 0.006 3.994 13 C -0.009 4.009 14 O -0.316 6.316 15 C -0.010 4.010 16 C -0.180 4.180 17 C -0.166 4.166 18 C -0.199 4.199 19 H 0.085 0.915 20 H 0.228 0.772 21 H 0.076 0.924 22 H 0.049 0.951 23 H 0.085 0.915 24 H 0.103 0.897 25 H 0.124 0.876 26 H 0.102 0.898 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.120 0.880 30 H 0.090 0.910 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.196 -13.266 1.723 17.445 hybrid contribution 0.262 0.583 -0.139 0.654 sum 11.458 -12.683 1.584 17.166 Atomic orbital electron populations 1.70193 1.09597 1.28980 1.36506 1.27015 0.95556 1.05036 0.91125 0.84982 0.78662 0.74852 0.79527 1.18346 1.19667 1.17366 1.21438 0.94682 0.90185 1.54827 0.89611 1.18657 0.86860 0.84514 0.76089 1.90536 1.16206 1.88083 1.57490 1.45737 1.09243 1.04636 1.80871 1.21048 0.94499 0.83983 0.99893 1.22718 0.93639 0.97332 0.87252 1.88040 1.52969 1.51986 1.38595 1.24102 0.87887 0.90160 0.98821 1.23222 0.97212 1.01639 0.95889 1.22644 0.95581 0.99731 0.98611 1.23508 0.96132 0.99805 1.00495 0.91523 0.77216 0.92401 0.95060 0.91464 0.89710 0.87602 0.89822 0.91041 0.90413 0.88023 0.91040 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.90 11.83 21.84 0.26 -51.64 16 2 C 0.03 1.58 5.50 85.31 0.47 2.05 16 3 Si 1.00 42.03 29.56 68.60 2.03 44.06 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 7 C -0.57 -34.00 9.54 24.83 0.24 -33.76 16 8 H 0.09 4.57 7.85 -2.91 -0.02 4.55 16 9 C 0.53 32.72 7.75 86.36 0.67 33.39 16 10 O -0.64 -44.49 15.02 -4.29 -0.06 -44.56 16 11 N -0.75 -36.19 5.50 -467.42 -2.57 -38.76 16 12 C 0.13 5.33 6.06 86.38 0.52 5.85 16 13 C 0.07 1.93 5.91 71.98 0.43 2.35 16 14 O -0.40 -12.27 10.30 -148.98 -1.53 -13.81 16 15 C 0.05 1.05 4.32 31.18 0.13 1.19 16 16 C -0.14 -2.80 7.91 31.12 0.25 -2.55 16 17 C -0.13 -2.02 8.08 31.12 0.25 -1.77 16 18 C -0.16 -3.25 7.92 31.18 0.25 -3.00 16 19 H 0.27 15.61 8.29 -92.71 -0.77 14.84 16 20 H 0.39 16.92 8.45 -92.70 -0.78 16.14 16 21 H 0.06 2.39 8.14 -2.39 -0.02 2.38 16 22 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 25 H 0.11 1.82 7.87 -2.39 -0.02 1.80 16 26 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -78.51 270.40 1.65 -76.85 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: 0.33 Total: 24.11 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 3.20 Total: 3.75 kcal Atomic # 7 Polarization: -88.10 SS G_CDS: -2.31 Total: -90.41 kcal Atomic # 8 Polarization: -56.77 SS G_CDS: -1.60 Total: -58.37 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -78.51 1.65 -76.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388307508.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.464 kcal (2) G-P(sol) polarization free energy of solvation -78.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds