Wall clock time and date at job start Sun Mar 29 2020 21:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86795 * 120.00035 * 2 1 4 4 H 1.48506 * 109.47146 * 270.00056 * 3 2 1 5 5 H 1.48495 * 109.47248 * 30.00070 * 3 2 1 6 6 H 1.48501 * 109.47092 * 150.00361 * 3 2 1 7 7 C 1.40051 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99833 * 180.02562 * 7 2 1 9 9 C 1.46369 * 119.99803 * 359.97438 * 7 2 1 10 10 O 1.21688 * 120.00087 * 0.02562 * 9 7 2 11 11 N 1.34778 * 119.99896 * 180.02562 * 9 7 2 12 12 C 1.46497 * 120.00236 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.47478 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47464 * 179.97438 * 13 12 11 15 15 C 1.53781 * 113.61609 * 174.99951 * 14 13 12 16 16 C 1.53781 * 87.08070 * 139.98229 * 15 14 13 17 17 O 1.42905 * 113.61505 * 219.93701 * 16 15 14 18 18 C 1.53786 * 87.17350 * 334.52830 * 16 15 14 19 19 H 0.97010 * 120.00255 * 0.02562 * 1 2 3 20 20 H 0.97000 * 120.00237 * 359.97438 * 11 9 7 21 21 H 1.09008 * 109.47373 * 60.00129 * 12 11 9 22 22 H 1.08997 * 109.47285 * 300.00152 * 12 11 9 23 23 H 1.08997 * 109.47139 * 59.99772 * 13 12 11 24 24 H 1.09006 * 109.47243 * 300.00277 * 13 12 11 25 25 H 1.08996 * 112.84723 * 43.80771 * 14 13 12 26 26 H 1.08999 * 113.61181 * 25.43284 * 15 14 13 27 27 H 1.08998 * 113.61680 * 254.52836 * 15 14 13 28 28 H 1.09002 * 113.61445 * 89.11830 * 16 15 14 29 29 H 0.96696 * 114.00145 * 178.47219 * 17 16 15 30 30 H 1.08992 * 113.61675 * 140.02412 * 18 16 15 31 31 H 1.09000 * 113.60973 * 270.92699 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4382 2.6526 0.7000 6 1 3.5383 1.4401 0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0001 9 6 1.2750 -2.4804 -0.0005 10 8 0.0581 -2.4804 -0.0005 11 7 1.9488 -3.6477 -0.0005 12 6 1.2164 -4.9164 -0.0011 13 6 2.2105 -6.0793 -0.0016 14 6 1.4455 -7.4044 -0.0016 15 6 2.3531 -8.6397 -0.1249 16 6 1.4364 -9.3186 0.9064 17 8 2.1411 -10.1086 1.8664 18 6 1.0841 -7.9084 1.4086 19 1 -0.4851 0.8401 -0.0004 20 1 2.9188 -3.6477 -0.0009 21 1 0.5900 -4.9740 -0.8914 22 1 0.5894 -4.9743 0.8886 23 1 2.8372 -6.0220 0.8883 24 1 2.8373 -6.0212 -0.8916 25 1 0.6059 -7.4083 -0.6966 26 1 3.3681 -8.4734 0.2357 27 1 2.3236 -9.1066 -1.1094 28 1 0.5934 -9.8466 0.4607 29 1 1.5721 -10.5193 2.5317 30 1 0.0310 -7.7852 1.6612 31 1 1.7529 -7.5426 2.1876 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388343803.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:42 Heat of formation + Delta-G solvation = -85.078508 kcal Electronic energy + Delta-G solvation = -13745.746423 eV Core-core repulsion = 11220.192460 eV Total energy + Delta-G solvation = -2525.553963 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.46888 -37.23456 -35.47874 -33.47058 -32.28972 -29.73493 -26.34564 -25.77723 -23.86410 -21.30289 -19.83947 -19.30896 -17.61439 -17.00839 -15.58594 -15.28744 -14.72974 -14.47257 -14.24706 -13.82016 -13.28223 -12.48579 -12.44361 -12.16301 -11.80331 -11.59931 -11.15733 -11.09736 -10.88123 -10.68808 -10.57894 -10.38491 -10.18642 -10.11198 -9.78833 -8.82188 -7.57212 -7.43775 -6.15163 -4.60560 3.16149 3.22691 3.26369 4.05771 4.14684 4.51348 4.58488 4.62945 4.68881 4.81206 5.02268 5.34569 5.61489 5.65958 5.70518 5.76000 5.83491 5.85972 5.95287 6.07332 6.19097 6.41049 6.68034 6.68754 7.46422 7.50106 7.98314 8.16305 8.37352 9.05775 9.59363 10.64091 10.83059 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.084908 B = 0.004888 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 329.690559 B = 5727.133158 C = 5849.446645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.553 3.447 10 O -0.583 6.583 11 N -0.770 5.770 12 C 0.134 3.866 13 C -0.116 4.116 14 C -0.104 4.104 15 C -0.124 4.124 16 C 0.072 3.928 17 O -0.563 6.563 18 C -0.164 4.164 19 H 0.268 0.732 20 H 0.379 0.621 21 H 0.045 0.955 22 H 0.046 0.954 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.375 0.625 30 H 0.069 0.931 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.093 -14.517 1.245 15.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.085 0.915 9 C 0.357 3.643 10 O -0.466 6.466 11 N -0.425 5.425 12 C 0.009 3.991 13 C -0.154 4.154 14 C -0.123 4.123 15 C -0.162 4.162 16 C 0.013 3.987 17 O -0.369 6.369 18 C -0.202 4.202 19 H 0.078 0.922 20 H 0.210 0.790 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.112 0.888 26 H 0.108 0.892 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.222 0.778 30 H 0.088 0.912 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.508 -14.219 0.890 14.673 hybrid contribution 0.368 0.623 0.309 0.786 sum 3.876 -13.597 1.199 14.189 Atomic orbital electron populations 1.70028 1.07074 1.27180 1.35552 1.25711 0.94605 1.00279 0.92623 0.86377 0.80146 0.81430 0.78800 1.19760 1.20478 1.18929 1.20905 0.93575 0.89495 1.54406 0.91462 1.18225 0.87215 0.82545 0.76314 1.90590 1.14135 1.86965 1.54881 1.46137 1.08523 1.05105 1.82742 1.20842 0.94063 0.83744 1.00432 1.21727 0.98265 0.93207 1.02173 1.22306 0.98818 0.93799 0.97385 1.23118 0.99426 0.95579 0.98036 1.23423 0.95090 0.89625 0.90537 1.86522 1.38213 1.68488 1.43646 1.23799 1.02144 0.96459 0.97816 0.92163 0.78953 0.93643 0.93571 0.91636 0.91557 0.88784 0.89228 0.91063 0.90313 0.77795 0.91235 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.52 11.83 55.55 0.66 -22.87 16 2 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 3 Si 0.91 20.41 29.56 -169.99 -5.02 15.39 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.55 -15.80 9.54 -35.63 -0.34 -16.14 16 8 H 0.07 1.78 7.85 -52.49 -0.41 1.36 16 9 C 0.55 16.24 7.75 -12.99 -0.10 16.14 16 10 O -0.58 -19.43 15.02 5.20 0.08 -19.35 16 11 N -0.77 -17.75 5.55 -61.72 -0.34 -18.10 16 12 C 0.13 2.63 5.66 -4.05 -0.02 2.61 16 13 C -0.12 -1.66 5.17 -26.73 -0.14 -1.79 16 14 C -0.10 -1.26 3.66 -89.67 -0.33 -1.58 16 15 C -0.12 -1.34 7.47 -25.92 -0.19 -1.54 16 16 C 0.07 0.74 5.20 -25.92 -0.13 0.60 16 17 O -0.56 -5.94 13.67 -35.23 -0.48 -6.43 16 18 C -0.16 -1.88 7.48 -25.77 -0.19 -2.07 16 19 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 20 H 0.38 7.65 8.45 -40.82 -0.35 7.30 16 21 H 0.05 0.94 8.14 -51.92 -0.42 0.52 16 22 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 23 H 0.06 0.92 7.85 -51.93 -0.41 0.51 16 24 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.09 1.11 8.13 -51.93 -0.42 0.69 16 26 H 0.09 1.02 8.10 -51.93 -0.42 0.60 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.38 2.31 9.12 45.56 0.42 2.72 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 1.10 7.90 -51.93 -0.41 0.69 16 LS Contribution 268.92 15.07 4.05 4.05 Total: -1.00 -35.73 268.92 -6.28 -42.01 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -3.67 Total: 6.68 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -1.55 Total: -1.40 kcal Atomic # 7 Polarization: -41.28 SS G_CDS: 0.31 Total: -40.96 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.40 Total: -25.77 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -35.73 -6.28 -42.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388343803.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.067 kcal (2) G-P(sol) polarization free energy of solvation -35.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds