Wall clock time and date at job start Sun Mar 29 2020 21:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86795 * 120.00035 * 2 1 4 4 H 1.48506 * 109.47146 * 270.00056 * 3 2 1 5 5 H 1.48495 * 109.47248 * 30.00070 * 3 2 1 6 6 H 1.48501 * 109.47092 * 150.00361 * 3 2 1 7 7 C 1.40051 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99833 * 180.02562 * 7 2 1 9 9 C 1.46369 * 119.99803 * 359.97438 * 7 2 1 10 10 O 1.21688 * 120.00087 * 0.02562 * 9 7 2 11 11 N 1.34778 * 119.99896 * 180.02562 * 9 7 2 12 12 C 1.46497 * 120.00236 * 180.02562 * 11 9 7 13 13 C 1.52996 * 109.47478 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.47464 * 179.97438 * 13 12 11 15 15 C 1.53781 * 113.61609 * 174.99951 * 14 13 12 16 16 C 1.53781 * 87.08070 * 139.98229 * 15 14 13 17 17 O 1.42905 * 113.61505 * 219.93701 * 16 15 14 18 18 C 1.53786 * 87.17350 * 334.52830 * 16 15 14 19 19 H 0.97010 * 120.00255 * 0.02562 * 1 2 3 20 20 H 0.97000 * 120.00237 * 359.97438 * 11 9 7 21 21 H 1.09008 * 109.47373 * 60.00129 * 12 11 9 22 22 H 1.08997 * 109.47285 * 300.00152 * 12 11 9 23 23 H 1.08997 * 109.47139 * 59.99772 * 13 12 11 24 24 H 1.09006 * 109.47243 * 300.00277 * 13 12 11 25 25 H 1.08996 * 112.84723 * 43.80771 * 14 13 12 26 26 H 1.08999 * 113.61181 * 25.43284 * 15 14 13 27 27 H 1.08998 * 113.61680 * 254.52836 * 15 14 13 28 28 H 1.09002 * 113.61445 * 89.11830 * 16 15 14 29 29 H 0.96696 * 114.00145 * 178.47219 * 17 16 15 30 30 H 1.08992 * 113.61675 * 140.02412 * 18 16 15 31 31 H 1.09000 * 113.60973 * 270.92699 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4382 2.6526 0.7000 6 1 3.5383 1.4401 0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0001 9 6 1.2750 -2.4804 -0.0005 10 8 0.0581 -2.4804 -0.0005 11 7 1.9488 -3.6477 -0.0005 12 6 1.2164 -4.9164 -0.0011 13 6 2.2105 -6.0793 -0.0016 14 6 1.4455 -7.4044 -0.0016 15 6 2.3531 -8.6397 -0.1249 16 6 1.4364 -9.3186 0.9064 17 8 2.1411 -10.1086 1.8664 18 6 1.0841 -7.9084 1.4086 19 1 -0.4851 0.8401 -0.0004 20 1 2.9188 -3.6477 -0.0009 21 1 0.5900 -4.9740 -0.8914 22 1 0.5894 -4.9743 0.8886 23 1 2.8372 -6.0220 0.8883 24 1 2.8373 -6.0212 -0.8916 25 1 0.6059 -7.4083 -0.6966 26 1 3.3681 -8.4734 0.2357 27 1 2.3236 -9.1066 -1.1094 28 1 0.5934 -9.8466 0.4607 29 1 1.5721 -10.5193 2.5317 30 1 0.0310 -7.7852 1.6612 31 1 1.7529 -7.5426 2.1876 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388343803.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:42 Heat of formation + Delta-G solvation = -113.931943 kcal Electronic energy + Delta-G solvation = -13746.997602 eV Core-core repulsion = 11220.192460 eV Total energy + Delta-G solvation = -2526.805142 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.41126 -39.30096 -36.54143 -35.20944 -34.45600 -31.32717 -28.38588 -26.66437 -25.27214 -22.53781 -21.75147 -20.40082 -19.21336 -18.30317 -17.42086 -16.60890 -16.20563 -15.93727 -15.84286 -15.23369 -14.63404 -14.37966 -13.81152 -13.36366 -13.15244 -13.13622 -12.79065 -12.65162 -12.50536 -12.28908 -12.02851 -11.85852 -11.57906 -11.09971 -10.93387 -10.65362 -9.87730 -9.48375 -8.29668 -6.86740 1.40463 1.42316 1.57821 2.25207 2.46521 3.07687 3.42135 3.59159 3.61399 3.68846 3.87120 4.02212 4.22467 4.42116 4.52668 4.70815 4.74546 4.85478 4.88334 5.00716 5.11834 5.19984 5.31245 5.31778 5.53707 5.87378 6.24173 6.28061 6.85872 6.92626 7.55355 8.48495 8.66849 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.084908 B = 0.004888 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 329.690559 B = 5727.133158 C = 5849.446645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 1.001 2.999 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.248 1.248 7 C -0.575 4.575 8 H 0.089 0.911 9 C 0.533 3.467 10 O -0.635 6.635 11 N -0.758 5.758 12 C 0.136 3.864 13 C -0.100 4.100 14 C -0.107 4.107 15 C -0.120 4.120 16 C 0.080 3.920 17 O -0.580 6.580 18 C -0.169 4.169 19 H 0.275 0.725 20 H 0.395 0.605 21 H 0.030 0.970 22 H 0.027 0.973 23 H 0.070 0.930 24 H 0.078 0.922 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.394 0.606 30 H 0.069 0.931 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.825 -14.777 1.119 15.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.188 4.188 3 Si 0.820 3.180 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.172 1.172 7 C -0.612 4.612 8 H 0.107 0.893 9 C 0.337 3.663 10 O -0.523 6.523 11 N -0.412 5.412 12 C 0.011 3.989 13 C -0.138 4.138 14 C -0.126 4.126 15 C -0.158 4.158 16 C 0.022 3.978 17 O -0.388 6.388 18 C -0.207 4.207 19 H 0.085 0.915 20 H 0.229 0.771 21 H 0.048 0.952 22 H 0.046 0.954 23 H 0.089 0.911 24 H 0.097 0.903 25 H 0.115 0.885 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.118 0.882 29 H 0.243 0.757 30 H 0.088 0.912 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.285 -14.542 0.775 15.491 hybrid contribution -0.193 0.628 0.371 0.754 sum 5.092 -13.913 1.146 14.860 Atomic orbital electron populations 1.70197 1.09638 1.28989 1.36497 1.27023 0.95544 1.05093 0.91120 0.84975 0.78716 0.74831 0.79468 1.18517 1.19752 1.17172 1.21468 0.94802 0.90133 1.54788 0.89334 1.18684 0.86889 0.84580 0.76123 1.90541 1.16296 1.88106 1.57354 1.45851 1.09366 1.04952 1.81054 1.20962 0.95013 0.84108 0.98784 1.21611 0.97152 0.92012 1.03005 1.22301 0.99203 0.93034 0.98067 1.23081 0.98855 0.94676 0.99170 1.23389 0.95299 0.88995 0.90139 1.86472 1.39404 1.68542 1.44368 1.23817 1.01927 0.97803 0.97135 0.91536 0.77088 0.95161 0.95416 0.91084 0.90343 0.88501 0.89768 0.89520 0.88249 0.75658 0.91250 0.90244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.42 11.83 21.84 0.26 -51.17 16 2 C 0.03 1.53 5.50 85.31 0.47 2.00 16 3 Si 1.00 41.37 29.56 68.60 2.03 43.40 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 6 H -0.25 -9.51 7.11 99.48 0.71 -8.81 16 7 C -0.58 -33.36 9.54 24.83 0.24 -33.12 16 8 H 0.09 4.57 7.85 -2.91 -0.02 4.55 16 9 C 0.53 32.03 7.75 86.36 0.67 32.70 16 10 O -0.64 -44.05 15.02 -4.31 -0.06 -44.11 16 11 N -0.76 -35.26 5.55 -467.42 -2.59 -37.86 16 12 C 0.14 5.40 5.66 86.38 0.49 5.89 16 13 C -0.10 -2.76 5.17 30.59 0.16 -2.60 16 14 C -0.11 -2.44 3.66 -10.18 -0.04 -2.47 16 15 C -0.12 -2.33 7.47 31.12 0.23 -2.10 16 16 C 0.08 1.46 5.20 31.12 0.16 1.63 16 17 O -0.58 -10.96 13.67 -148.98 -2.04 -12.99 16 18 C -0.17 -3.68 7.48 31.21 0.23 -3.45 16 19 H 0.27 15.46 8.29 -92.70 -0.77 14.70 16 20 H 0.40 15.69 8.45 -92.71 -0.78 14.90 16 21 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 22 H 0.03 1.19 8.14 -2.39 -0.02 1.18 16 23 H 0.07 1.90 7.85 -2.39 -0.02 1.88 16 24 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 25 H 0.10 2.17 8.13 -2.39 -0.02 2.15 16 26 H 0.08 1.74 8.10 -2.39 -0.02 1.72 16 27 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.39 3.98 9.12 -74.06 -0.68 3.31 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.08 1.89 7.90 -2.39 -0.02 1.87 16 Total: -1.00 -78.84 268.92 -0.12 -78.96 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: -0.32 Total: 25.29 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 2.61 Total: -1.52 kcal Atomic # 7 Polarization: -86.69 SS G_CDS: -2.34 Total: -89.02 kcal Atomic # 8 Polarization: -55.01 SS G_CDS: -2.10 Total: -57.11 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -78.84 -0.12 -78.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388343803.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.970 kcal (2) G-P(sol) polarization free energy of solvation -78.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds