Wall clock time and date at job start Sun Mar 29 2020 21:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86804 * 119.99789 * 2 1 4 4 H 1.48503 * 109.47038 * 240.00495 * 3 2 1 5 5 H 1.48498 * 109.47309 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47243 * 119.99994 * 3 2 1 7 7 C 1.40037 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00198 * 180.02562 * 7 2 1 9 9 C 1.46374 * 120.00515 * 359.97438 * 7 2 1 10 10 O 1.21694 * 119.99748 * 0.02562 * 9 7 2 11 11 N 1.34773 * 120.00856 * 180.02562 * 9 7 2 12 12 C 1.46505 * 119.99455 * 0.02562 * 11 9 7 13 13 C 1.52997 * 109.47212 * 90.00023 * 12 11 9 14 14 O 1.42904 * 109.47396 * 64.99584 * 13 12 11 15 15 C 1.46493 * 120.00646 * 179.97438 * 11 9 7 16 16 C 1.52997 * 109.47377 * 270.00434 * 15 11 9 17 17 C 1.53003 * 117.49739 * 243.61994 * 16 15 11 18 18 C 1.52999 * 59.99975 * 252.50849 * 17 16 15 19 19 H 0.97000 * 119.99745 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47068 * 210.00083 * 12 11 9 21 21 H 1.09001 * 109.47372 * 330.00170 * 12 11 9 22 22 H 1.09001 * 109.47630 * 184.99905 * 13 12 11 23 23 H 1.09004 * 109.47346 * 305.00035 * 13 12 11 24 24 H 0.96691 * 114.00252 * 179.97438 * 14 13 12 25 25 H 1.09006 * 109.46911 * 30.00087 * 15 11 9 26 26 H 1.08996 * 109.47170 * 149.99599 * 15 11 9 27 27 H 1.09003 * 115.55155 * 29.32368 * 16 15 11 28 28 H 1.09001 * 117.49730 * 359.97438 * 17 16 15 29 29 H 1.08998 * 117.50111 * 145.01401 * 17 16 15 30 30 H 1.08998 * 117.50080 * 252.51250 * 18 17 16 31 31 H 1.08998 * 117.49680 * 107.48979 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6965 -1.2126 5 1 1.2758 2.7465 -0.0006 6 1 3.0944 1.6965 1.2124 7 6 2.0070 -1.2127 -0.0005 8 1 3.0870 -1.2128 -0.0001 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9490 -3.6477 -0.0005 12 6 3.4141 -3.6476 0.0000 13 6 3.9235 -3.6479 1.4427 14 8 3.5452 -4.8691 2.0813 15 6 1.2166 -4.9164 0.0000 16 6 0.9621 -5.3577 1.4427 17 6 1.6132 -6.6618 1.9078 18 6 0.1047 -6.6064 1.6586 19 1 -0.4850 0.8401 0.0004 20 1 3.7776 -4.5375 -0.5139 21 1 3.7776 -2.7575 -0.5134 22 1 5.0098 -3.5583 1.4445 23 1 3.4887 -2.8062 1.9818 24 1 3.8361 -4.9386 3.0008 25 1 0.2640 -4.7862 -0.5135 26 1 1.8055 -5.6761 -0.5139 27 1 0.8710 -4.5524 2.1716 28 1 2.2226 -7.2055 1.1858 29 1 1.9509 -6.7146 2.9428 30 1 -0.5502 -6.6227 2.5297 31 1 -0.2780 -7.1134 0.7729 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388353712.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:45 Heat of formation + Delta-G solvation = -58.690119 kcal Electronic energy + Delta-G solvation = -14856.927977 eV Core-core repulsion = 12332.518300 eV Total energy + Delta-G solvation = -2524.409677 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.26939 -36.18412 -36.03301 -33.43573 -32.43634 -28.78347 -26.92775 -24.88254 -22.19417 -21.63233 -20.23767 -18.90493 -17.01269 -16.38127 -15.48142 -15.31351 -14.48042 -14.11880 -14.08579 -13.19175 -12.96993 -12.29537 -12.13969 -11.73266 -11.32897 -11.16862 -11.13542 -10.97167 -10.75418 -10.52589 -10.27851 -10.15316 -9.66954 -9.40664 -9.08171 -8.83391 -7.52759 -7.15744 -6.17019 -4.63053 3.14152 3.19610 3.20899 4.08583 4.45757 4.58531 4.65009 4.90232 5.39326 5.61151 5.69361 5.74516 5.84759 5.89309 6.06996 6.11771 6.13186 6.36298 6.45101 6.50467 6.60952 6.65879 6.71272 7.04719 7.44416 7.71338 8.11389 8.16922 8.42233 9.03288 9.49871 10.61146 10.80779 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.039663 B = 0.009931 C = 0.008574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.779751 B = 2818.676119 C = 3264.964906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.904 3.096 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.546 4.546 8 H 0.070 0.930 9 C 0.557 3.443 10 O -0.575 6.575 11 N -0.634 5.634 12 C 0.133 3.867 13 C 0.056 3.944 14 O -0.555 6.555 15 C 0.163 3.837 16 C -0.122 4.122 17 C -0.153 4.153 18 C -0.203 4.203 19 H 0.268 0.732 20 H 0.054 0.946 21 H 0.091 0.909 22 H 0.033 0.967 23 H 0.052 0.948 24 H 0.360 0.640 25 H 0.069 0.931 26 H 0.049 0.951 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.513 -7.099 2.966 10.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.729 3.271 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.582 4.582 8 H 0.088 0.912 9 C 0.362 3.638 10 O -0.457 6.457 11 N -0.371 5.371 12 C 0.008 3.992 13 C -0.024 4.024 14 O -0.358 6.358 15 C 0.039 3.961 16 C -0.141 4.141 17 C -0.190 4.190 18 C -0.241 4.241 19 H 0.079 0.921 20 H 0.073 0.927 21 H 0.109 0.891 22 H 0.052 0.948 23 H 0.071 0.929 24 H 0.204 0.796 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.115 0.885 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.378 -7.086 2.336 9.815 hybrid contribution 0.893 0.965 0.718 1.498 sum 7.271 -6.121 3.054 9.983 Atomic orbital electron populations 1.70016 1.07023 1.27280 1.35255 1.25722 0.94582 1.00202 0.92702 0.86499 0.79889 0.81364 0.79381 1.19279 1.20575 1.19362 1.20950 0.93467 0.89377 1.54447 0.91239 1.18238 0.87005 0.82281 0.76250 1.90605 1.14030 1.86312 1.54771 1.47916 1.04238 1.05460 1.79474 1.21223 0.83027 1.01490 0.93480 1.22785 0.96334 0.87030 0.96207 1.86724 1.81244 1.39191 1.28627 1.20511 0.96698 0.86006 0.92878 1.22580 1.01313 0.90705 0.99552 1.22620 0.93364 1.01985 1.01005 1.22979 0.94143 1.04510 1.02490 0.92101 0.92725 0.89139 0.94842 0.92924 0.79560 0.91233 0.93246 0.88526 0.89979 0.90194 0.89930 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.99 11.83 55.55 0.66 -22.34 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.33 16 3 Si 0.90 19.91 29.56 -169.99 -5.02 14.88 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.55 -15.10 8.74 -35.64 -0.31 -15.41 16 8 H 0.07 1.73 6.00 -52.49 -0.31 1.42 16 9 C 0.56 15.87 7.61 -12.99 -0.10 15.77 16 10 O -0.57 -18.78 14.60 5.19 0.08 -18.71 16 11 N -0.63 -14.64 2.45 -175.35 -0.43 -15.07 16 12 C 0.13 2.50 5.57 -4.04 -0.02 2.47 16 13 C 0.06 0.92 7.39 37.16 0.27 1.19 16 14 O -0.55 -8.48 9.21 -35.23 -0.32 -8.80 16 15 C 0.16 3.43 5.64 -4.05 -0.02 3.40 16 16 C -0.12 -2.34 4.33 -90.62 -0.39 -2.73 16 17 C -0.15 -2.36 8.03 -26.73 -0.21 -2.58 16 18 C -0.20 -3.30 10.25 -26.73 -0.27 -3.57 16 19 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 20 H 0.05 0.92 7.89 -51.93 -0.41 0.51 16 21 H 0.09 1.71 6.09 -51.93 -0.32 1.40 16 22 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.36 4.04 9.12 45.56 0.42 4.46 16 25 H 0.07 1.62 7.42 -51.93 -0.39 1.23 16 26 H 0.05 0.91 7.63 -51.93 -0.40 0.52 16 27 H 0.10 2.16 8.14 -51.93 -0.42 1.74 16 28 H 0.08 1.23 8.03 -51.93 -0.42 0.81 16 29 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 261.30 15.07 3.94 3.94 Total: -1.00 -33.68 261.30 -5.76 -39.44 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -3.49 Total: 5.78 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -1.16 Total: 0.88 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.23 Total: -37.41 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.25 Total: -27.51 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -33.68 -5.76 -39.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388353712.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.251 kcal (2) G-P(sol) polarization free energy of solvation -33.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds