Wall clock time and date at job start Sun Mar 29 2020 21:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86804 * 119.99789 * 2 1 4 4 H 1.48503 * 109.47038 * 240.00495 * 3 2 1 5 5 H 1.48498 * 109.47309 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47243 * 119.99994 * 3 2 1 7 7 C 1.40037 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00198 * 180.02562 * 7 2 1 9 9 C 1.46374 * 120.00515 * 359.97438 * 7 2 1 10 10 O 1.21694 * 119.99748 * 0.02562 * 9 7 2 11 11 N 1.34773 * 120.00856 * 180.02562 * 9 7 2 12 12 C 1.46505 * 119.99455 * 0.02562 * 11 9 7 13 13 C 1.52997 * 109.47212 * 90.00023 * 12 11 9 14 14 O 1.42904 * 109.47396 * 64.99584 * 13 12 11 15 15 C 1.46493 * 120.00646 * 179.97438 * 11 9 7 16 16 C 1.52997 * 109.47377 * 270.00434 * 15 11 9 17 17 C 1.53003 * 117.49739 * 243.61994 * 16 15 11 18 18 C 1.52999 * 59.99975 * 252.50849 * 17 16 15 19 19 H 0.97000 * 119.99745 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47068 * 210.00083 * 12 11 9 21 21 H 1.09001 * 109.47372 * 330.00170 * 12 11 9 22 22 H 1.09001 * 109.47630 * 184.99905 * 13 12 11 23 23 H 1.09004 * 109.47346 * 305.00035 * 13 12 11 24 24 H 0.96691 * 114.00252 * 179.97438 * 14 13 12 25 25 H 1.09006 * 109.46911 * 30.00087 * 15 11 9 26 26 H 1.08996 * 109.47170 * 149.99599 * 15 11 9 27 27 H 1.09003 * 115.55155 * 29.32368 * 16 15 11 28 28 H 1.09001 * 117.49730 * 359.97438 * 17 16 15 29 29 H 1.08998 * 117.50111 * 145.01401 * 17 16 15 30 30 H 1.08998 * 117.50080 * 252.51250 * 18 17 16 31 31 H 1.08998 * 117.49680 * 107.48979 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6965 -1.2126 5 1 1.2758 2.7465 -0.0006 6 1 3.0944 1.6965 1.2124 7 6 2.0070 -1.2127 -0.0005 8 1 3.0870 -1.2128 -0.0001 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4805 -0.0005 11 7 1.9490 -3.6477 -0.0005 12 6 3.4141 -3.6476 0.0000 13 6 3.9235 -3.6479 1.4427 14 8 3.5452 -4.8691 2.0813 15 6 1.2166 -4.9164 0.0000 16 6 0.9621 -5.3577 1.4427 17 6 1.6132 -6.6618 1.9078 18 6 0.1047 -6.6064 1.6586 19 1 -0.4850 0.8401 0.0004 20 1 3.7776 -4.5375 -0.5139 21 1 3.7776 -2.7575 -0.5134 22 1 5.0098 -3.5583 1.4445 23 1 3.4887 -2.8062 1.9818 24 1 3.8361 -4.9386 3.0008 25 1 0.2640 -4.7862 -0.5135 26 1 1.8055 -5.6761 -0.5139 27 1 0.8710 -4.5524 2.1716 28 1 2.2226 -7.2055 1.1858 29 1 1.9509 -6.7146 2.9428 30 1 -0.5502 -6.6227 2.5297 31 1 -0.2780 -7.1134 0.7729 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388353712.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:45 Heat of formation + Delta-G solvation = -83.885731 kcal Electronic energy + Delta-G solvation = -14858.020541 eV Core-core repulsion = 12332.518300 eV Total energy + Delta-G solvation = -2525.502241 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.04939 -37.88385 -37.36303 -35.23317 -34.56390 -30.33643 -28.88639 -26.70000 -23.72705 -22.96206 -21.85501 -20.74328 -18.48987 -18.21207 -17.37047 -16.93699 -15.99244 -15.92187 -15.61723 -14.83183 -14.38004 -14.08455 -13.87453 -13.47456 -12.98265 -12.97299 -12.82395 -12.51074 -12.26634 -12.20735 -12.05663 -11.84714 -11.08498 -10.89537 -10.71243 -10.47282 -9.73110 -9.03445 -8.25441 -6.80670 1.39612 1.43277 1.54456 2.24533 2.49308 2.85511 3.20203 3.59160 3.72152 4.04252 4.22373 4.27986 4.40515 4.54317 4.57582 4.65835 4.85750 4.91762 4.98687 5.02109 5.14058 5.21202 5.37810 5.39815 5.48119 5.82689 6.18330 6.50461 6.90218 7.09597 7.50448 8.52720 8.71880 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.039663 B = 0.009931 C = 0.008574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.779751 B = 2818.676119 C = 3264.964906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.027 3.973 3 Si 0.993 3.007 4 H -0.252 1.252 5 H -0.278 1.278 6 H -0.253 1.253 7 C -0.565 4.565 8 H 0.094 0.906 9 C 0.539 3.461 10 O -0.634 6.634 11 N -0.635 5.635 12 C 0.124 3.876 13 C 0.068 3.932 14 O -0.563 6.563 15 C 0.165 3.835 16 C -0.151 4.151 17 C -0.115 4.115 18 C -0.197 4.197 19 H 0.272 0.728 20 H 0.081 0.919 21 H 0.086 0.914 22 H 0.073 0.927 23 H 0.020 0.980 24 H 0.380 0.620 25 H 0.031 0.969 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.251 -7.755 3.426 13.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.188 4.188 3 Si 0.813 3.187 4 H -0.176 1.176 5 H -0.203 1.203 6 H -0.177 1.177 7 C -0.602 4.602 8 H 0.112 0.888 9 C 0.344 3.656 10 O -0.521 6.521 11 N -0.369 5.369 12 C 0.001 3.999 13 C -0.011 4.011 14 O -0.369 6.369 15 C 0.042 3.958 16 C -0.171 4.171 17 C -0.152 4.152 18 C -0.235 4.235 19 H 0.082 0.918 20 H 0.099 0.901 21 H 0.104 0.896 22 H 0.091 0.909 23 H 0.039 0.961 24 H 0.228 0.772 25 H 0.050 0.950 26 H 0.097 0.903 27 H 0.074 0.926 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.181 -7.800 2.814 12.371 hybrid contribution 0.047 1.045 0.586 1.199 sum 9.228 -6.755 3.399 11.931 Atomic orbital electron populations 1.70217 1.09626 1.28753 1.36843 1.27011 0.95452 1.04996 0.91339 0.85139 0.78264 0.74927 0.80413 1.17573 1.20301 1.17683 1.21463 0.94760 0.89667 1.54295 0.88804 1.18691 0.86614 0.84315 0.75937 1.90548 1.16494 1.87635 1.57416 1.47775 1.06239 1.04771 1.78148 1.21499 0.80153 1.02576 0.95713 1.22518 0.98131 0.86411 0.94090 1.86647 1.81742 1.38191 1.30301 1.20559 0.95280 0.85777 0.94233 1.22218 1.06121 0.91311 0.97407 1.22657 0.92717 0.97684 1.02139 1.23102 0.95282 1.01843 1.03243 0.91820 0.90062 0.89587 0.90873 0.96128 0.77232 0.95014 0.90283 0.92574 0.88465 0.88465 0.89194 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.41 11.83 21.83 0.26 -51.15 16 2 C 0.03 1.49 5.50 85.30 0.47 1.96 16 3 Si 0.99 40.81 29.56 68.60 2.03 42.83 16 4 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 5 H -0.28 -11.18 7.11 99.48 0.71 -10.48 16 6 H -0.25 -9.67 7.11 99.48 0.71 -8.97 16 7 C -0.57 -31.82 8.74 24.83 0.22 -31.60 16 8 H 0.09 4.63 6.00 -2.91 -0.02 4.61 16 9 C 0.54 31.95 7.61 86.36 0.66 32.61 16 10 O -0.63 -43.95 14.60 -4.33 -0.06 -44.01 16 11 N -0.63 -29.73 2.45 -826.91 -2.03 -31.76 16 12 C 0.12 4.46 5.57 86.38 0.48 4.94 16 13 C 0.07 2.08 7.39 71.98 0.53 2.61 16 14 O -0.56 -15.63 9.21 -148.98 -1.37 -17.00 16 15 C 0.17 7.01 5.64 86.38 0.49 7.50 16 16 C -0.15 -5.78 4.33 -10.79 -0.05 -5.83 16 17 C -0.12 -3.22 8.03 30.59 0.25 -2.98 16 18 C -0.20 -6.10 10.25 30.59 0.31 -5.79 16 19 H 0.27 15.44 8.29 -92.71 -0.77 14.68 16 20 H 0.08 2.49 7.89 -2.39 -0.02 2.47 16 21 H 0.09 3.14 6.09 -2.39 -0.01 3.12 16 22 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 23 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.38 7.32 9.12 -74.06 -0.68 6.65 16 25 H 0.03 1.55 7.42 -2.38 -0.02 1.53 16 26 H 0.08 2.81 7.63 -2.39 -0.02 2.79 16 27 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.10 2.49 8.03 -2.39 -0.02 2.47 16 29 H 0.10 2.41 8.10 -2.39 -0.02 2.39 16 30 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 31 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -77.58 261.30 2.63 -74.95 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.45 Total: 22.71 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 3.36 Total: 3.43 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -1.77 Total: -82.91 kcal Atomic # 8 Polarization: -59.58 SS G_CDS: -1.44 Total: -61.01 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.83 kcal Total: -77.58 2.63 -74.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388353712.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.936 kcal (2) G-P(sol) polarization free energy of solvation -77.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds