Wall clock time and date at job start Sun Mar 29 2020 21:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00167 * 2 1 4 4 H 1.48501 * 109.47204 * 270.00142 * 3 2 1 5 5 H 1.48502 * 109.47028 * 30.00223 * 3 2 1 6 6 H 1.48499 * 109.47220 * 149.99776 * 3 2 1 7 7 C 1.37887 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99591 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99854 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46750 * 180.02562 * 9 7 2 11 11 S 1.81402 * 109.47108 * 180.02562 * 10 9 7 12 12 C 1.81403 * 103.00089 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.46815 * 179.97438 * 12 11 10 14 14 C 1.41379 * 126.80093 * 269.70536 * 13 12 11 15 15 C 1.35446 * 103.98652 * 180.26598 * 14 13 12 16 16 O 1.34044 * 106.44743 * 0.02562 * 15 14 13 17 17 N 1.20918 * 111.56370 * 359.97438 * 16 15 14 18 18 H 0.96991 * 120.00041 * 359.97438 * 1 2 3 19 19 H 1.08997 * 109.47198 * 59.99794 * 9 7 2 20 20 H 1.08999 * 109.46766 * 299.99675 * 9 7 2 21 21 H 1.08997 * 109.47465 * 59.99924 * 10 9 7 22 22 H 1.08999 * 109.47554 * 300.00070 * 10 9 7 23 23 H 1.08999 * 109.46823 * 60.00056 * 12 11 10 24 24 H 1.08995 * 109.47153 * 299.99736 * 12 11 10 25 25 H 1.08001 * 128.00721 * 0.25149 * 14 13 12 26 26 H 1.08004 * 126.77907 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 16 1.3383 -5.2331 -0.0036 12 6 2.6650 -6.4702 -0.0038 13 6 2.0634 -7.8519 -0.0050 14 6 1.7301 -8.6315 1.1264 15 6 1.2350 -9.7772 0.6003 16 8 1.2920 -9.6388 -0.7318 17 7 1.7532 -8.5666 -1.0478 18 1 -0.4850 0.8400 0.0004 19 1 0.6247 -2.5563 -0.8919 20 1 0.6241 -2.5575 0.8880 21 1 2.8713 -3.6048 0.8890 22 1 2.8727 -3.6040 -0.8909 23 1 3.2805 -6.3431 0.8867 24 1 3.2818 -6.3414 -0.8932 25 1 1.8441 -8.3733 2.1689 26 1 0.8676 -10.6336 1.1462 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388496165.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:54 Heat of formation + Delta-G solvation = 46.136255 kcal Electronic energy + Delta-G solvation = -11193.730143 eV Core-core repulsion = 8980.785855 eV Total energy + Delta-G solvation = -2212.944288 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -45.00105 -34.83942 -33.70190 -31.81379 -30.89085 -28.83345 -25.26544 -23.22398 -21.69267 -20.81006 -17.87522 -17.65458 -16.53528 -15.60811 -15.14312 -14.51749 -14.18887 -13.62648 -13.52902 -13.11900 -12.71485 -12.07243 -11.56439 -11.37725 -11.03513 -10.70145 -10.26678 -10.21729 -9.78097 -9.69061 -9.36059 -9.09069 -8.43521 -7.20607 -6.07302 -4.12151 1.34222 1.70564 2.68666 3.13200 3.21593 3.28483 3.34870 3.37803 4.05693 4.40639 4.43419 5.06205 5.13534 5.25849 5.28223 5.53766 5.59803 5.91206 5.95748 6.14115 6.69193 7.54699 7.62918 7.88684 8.21165 8.25395 8.92777 9.51770 11.03532 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.106378 B = 0.004900 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 263.149410 B = 5713.406953 C = 5786.455031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.037 3.963 10 C -0.060 4.060 11 S -0.263 6.263 12 C -0.019 4.019 13 C 0.037 3.963 14 C -0.219 4.219 15 C -0.066 4.066 16 O 0.102 5.898 17 N -0.353 5.353 18 H 0.263 0.737 19 H 0.027 0.973 20 H 0.027 0.973 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.099 0.901 24 H 0.094 0.906 25 H 0.173 0.827 26 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.251 -16.796 3.010 17.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.076 0.924 9 C -0.001 4.001 10 C -0.208 4.208 11 S -0.037 6.037 12 C -0.168 4.168 13 C -0.122 4.122 14 C -0.242 4.242 15 C -0.147 4.147 16 O 0.034 5.966 17 N -0.057 5.057 18 H 0.073 0.927 19 H 0.045 0.955 20 H 0.045 0.955 21 H 0.089 0.911 22 H 0.088 0.912 23 H 0.118 0.882 24 H 0.112 0.888 25 H 0.191 0.809 26 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 3.109 -16.659 1.683 17.030 hybrid contribution 1.719 1.178 0.999 2.311 sum 4.829 -15.481 2.682 16.437 Atomic orbital electron populations 1.69971 1.06088 1.26914 1.49902 1.25023 0.94909 0.99338 0.95019 0.86506 0.79732 0.83050 0.78195 1.20534 1.21080 1.19811 1.21087 0.93012 0.90187 1.51890 0.92397 1.18907 0.93416 0.89169 0.98634 1.23757 1.01547 0.92179 1.03357 1.87209 1.15857 1.02535 1.98062 1.21486 0.99328 0.89838 1.06111 1.22868 1.02630 0.97620 0.89119 1.22736 1.05870 0.94237 1.01330 1.25989 1.03314 1.01608 0.83793 1.84847 1.59799 1.28613 1.23381 1.73876 1.13837 0.93936 1.24011 0.92741 0.95470 0.95463 0.91127 0.91173 0.88234 0.88751 0.80920 0.76669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.29 55.43 0.74 -26.01 15 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 15 3 Si 0.90 21.43 29.54 -169.99 -5.02 16.40 15 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 15 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 15 9 C 0.04 0.98 4.98 -27.88 -0.14 0.84 15 10 C -0.06 -1.27 5.88 37.16 0.22 -1.05 15 11 S -0.26 -5.04 21.72 -107.50 -2.33 -7.38 15 12 C -0.02 -0.29 6.53 36.01 0.24 -0.05 15 13 C 0.04 0.53 6.59 -82.10 -0.54 -0.02 15 14 C -0.22 -2.39 11.12 -39.38 -0.44 -2.83 15 15 C -0.07 -0.59 12.30 29.74 0.37 -0.22 15 16 O 0.10 1.26 11.20 17.17 0.19 1.46 15 17 N -0.35 -5.37 12.07 33.42 0.40 -4.97 15 18 H 0.26 7.41 8.31 -40.82 -0.34 7.08 15 19 H 0.03 0.77 8.14 -51.93 -0.42 0.34 15 20 H 0.03 0.76 8.14 -51.93 -0.42 0.34 15 21 H 0.07 1.39 8.14 -51.93 -0.42 0.97 15 22 H 0.07 1.41 8.14 -51.92 -0.42 0.99 15 23 H 0.10 1.25 8.14 -51.92 -0.42 0.83 15 24 H 0.09 1.36 8.14 -51.93 -0.42 0.94 15 25 H 0.17 1.48 8.06 -52.49 -0.42 1.05 15 26 H 0.22 0.83 8.06 -52.48 -0.42 0.41 15 LS Contribution 252.11 15.07 3.80 3.80 Total: -1.00 -31.89 252.11 -5.86 -37.75 By element: Atomic # 1 Polarization: -1.46 SS G_CDS: -2.92 Total: -4.38 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -0.71 Total: -16.68 kcal Atomic # 7 Polarization: -32.12 SS G_CDS: 1.14 Total: -30.98 kcal Atomic # 8 Polarization: 1.26 SS G_CDS: 0.19 Total: 1.46 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -5.04 SS G_CDS: -2.33 Total: -7.38 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -31.89 -5.86 -37.75 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388496165.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.884 kcal (2) G-P(sol) polarization free energy of solvation -31.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds