Wall clock time and date at job start Sun Mar 29 2020 21:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00167 * 2 1 4 4 H 1.48501 * 109.47204 * 270.00142 * 3 2 1 5 5 H 1.48502 * 109.47028 * 30.00223 * 3 2 1 6 6 H 1.48499 * 109.47220 * 149.99776 * 3 2 1 7 7 C 1.37887 * 119.99956 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99591 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99854 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46750 * 180.02562 * 9 7 2 11 11 S 1.81402 * 109.47108 * 180.02562 * 10 9 7 12 12 C 1.81403 * 103.00089 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.46815 * 179.97438 * 12 11 10 14 14 C 1.41379 * 126.80093 * 269.70536 * 13 12 11 15 15 C 1.35446 * 103.98652 * 180.26598 * 14 13 12 16 16 O 1.34044 * 106.44743 * 0.02562 * 15 14 13 17 17 N 1.20918 * 111.56370 * 359.97438 * 16 15 14 18 18 H 0.96991 * 120.00041 * 359.97438 * 1 2 3 19 19 H 1.08997 * 109.47198 * 59.99794 * 9 7 2 20 20 H 1.08999 * 109.46766 * 299.99675 * 9 7 2 21 21 H 1.08997 * 109.47465 * 59.99924 * 10 9 7 22 22 H 1.08999 * 109.47554 * 300.00070 * 10 9 7 23 23 H 1.08999 * 109.46823 * 60.00056 * 12 11 10 24 24 H 1.08995 * 109.47153 * 299.99736 * 12 11 10 25 25 H 1.08001 * 128.00721 * 0.25149 * 14 13 12 26 26 H 1.08004 * 126.77907 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 16 1.3383 -5.2331 -0.0036 12 6 2.6650 -6.4702 -0.0038 13 6 2.0634 -7.8519 -0.0050 14 6 1.7301 -8.6315 1.1264 15 6 1.2350 -9.7772 0.6003 16 8 1.2920 -9.6388 -0.7318 17 7 1.7532 -8.5666 -1.0478 18 1 -0.4850 0.8400 0.0004 19 1 0.6247 -2.5563 -0.8919 20 1 0.6241 -2.5575 0.8880 21 1 2.8713 -3.6048 0.8890 22 1 2.8727 -3.6040 -0.8909 23 1 3.2805 -6.3431 0.8867 24 1 3.2818 -6.3414 -0.8932 25 1 1.8441 -8.3733 2.1689 26 1 0.8676 -10.6336 1.1462 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388496165.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:54 Heat of formation + Delta-G solvation = 26.172160 kcal Electronic energy + Delta-G solvation = -11194.595851 eV Core-core repulsion = 8980.785855 eV Total energy + Delta-G solvation = -2213.809996 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.95998 -35.85608 -35.75773 -32.93503 -32.69592 -29.96258 -27.32489 -24.15980 -23.35140 -22.06353 -18.80973 -18.69651 -18.62871 -17.05357 -16.52540 -16.13414 -15.70401 -15.12608 -14.72427 -14.41561 -13.93937 -13.61763 -13.55717 -12.93949 -12.48859 -12.37299 -12.16035 -11.75316 -11.66109 -11.01099 -10.76191 -10.62121 -10.54495 -8.73758 -8.24397 -6.38287 0.20024 0.79496 1.39806 1.42613 1.47384 1.54182 1.75721 2.39801 2.46729 3.07218 3.09002 3.53285 4.13757 4.22295 4.24147 4.34481 4.36947 4.57102 4.80020 4.84346 5.12365 5.36241 5.46740 5.72088 6.08780 6.76171 7.31382 7.32433 8.87568 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.106378 B = 0.004900 C = 0.004838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 263.149410 B = 5713.406953 C = 5786.455031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.974 3.026 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.542 4.542 8 H 0.070 0.930 9 C 0.044 3.956 10 C -0.048 4.048 11 S -0.301 6.301 12 C -0.001 4.001 13 C 0.008 3.992 14 C -0.231 4.231 15 C -0.040 4.040 16 O 0.099 5.901 17 N -0.391 5.391 18 H 0.266 0.734 19 H -0.007 1.007 20 H -0.001 1.001 21 H 0.085 0.915 22 H 0.077 0.923 23 H 0.125 0.875 24 H 0.095 0.905 25 H 0.196 0.804 26 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.589 -17.821 3.925 19.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.797 3.203 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.582 4.582 8 H 0.088 0.912 9 C 0.005 3.995 10 C -0.196 4.196 11 S -0.075 6.075 12 C -0.149 4.149 13 C -0.150 4.150 14 C -0.254 4.254 15 C -0.121 4.121 16 O 0.030 5.970 17 N -0.095 5.095 18 H 0.075 0.925 19 H 0.012 0.988 20 H 0.017 0.983 21 H 0.104 0.896 22 H 0.095 0.905 23 H 0.143 0.857 24 H 0.113 0.887 25 H 0.213 0.787 26 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 4.463 -17.681 2.593 18.419 hybrid contribution 1.254 1.311 0.735 1.958 sum 5.717 -16.370 3.328 17.656 Atomic orbital electron populations 1.70117 1.08035 1.28109 1.50933 1.26056 0.95801 1.03646 0.94331 0.85319 0.78645 0.77760 0.78544 1.19774 1.20706 1.18266 1.21549 0.93790 0.91218 1.51620 0.91227 1.18681 0.93735 0.91457 0.95603 1.23386 1.00175 0.91603 1.04387 1.87260 1.18750 1.03259 1.98210 1.21470 0.97401 0.88559 1.07458 1.23038 1.03822 0.97604 0.90493 1.23090 1.06277 0.94377 1.01658 1.26954 1.00658 1.02296 0.82179 1.84794 1.59214 1.27629 1.25364 1.73880 1.15222 0.95101 1.25286 0.92545 0.98829 0.98297 0.89595 0.90477 0.85651 0.88656 0.78710 0.71464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.30 13.29 21.45 0.28 -57.01 15 2 C 0.00 0.01 5.46 84.66 0.46 0.47 15 3 Si 0.97 43.83 29.54 68.60 2.03 45.86 15 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 15 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 15 6 H -0.26 -10.95 7.11 99.48 0.71 -10.25 15 7 C -0.54 -30.71 9.11 25.60 0.23 -30.47 15 8 H 0.07 3.68 7.74 -2.91 -0.02 3.66 15 9 C 0.04 2.37 4.98 29.85 0.15 2.52 15 10 C -0.05 -2.00 5.88 71.98 0.42 -1.58 15 11 S -0.30 -11.58 21.72 -56.49 -1.23 -12.81 15 12 C 0.00 -0.02 6.53 71.24 0.47 0.44 15 13 C 0.01 0.23 6.59 43.58 0.29 0.51 15 14 C -0.23 -4.41 11.12 22.40 0.25 -4.16 15 15 C -0.04 -0.58 12.30 67.17 0.83 0.25 15 16 O 0.10 2.26 11.20 71.60 0.80 3.06 15 17 N -0.39 -11.53 12.07 -49.55 -0.60 -12.13 15 18 H 0.27 15.26 8.31 -92.71 -0.77 14.49 15 19 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 15 20 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 15 21 H 0.09 3.31 8.14 -2.39 -0.02 3.29 15 22 H 0.08 3.10 8.14 -2.39 -0.02 3.08 15 23 H 0.13 2.86 8.14 -2.39 -0.02 2.84 15 24 H 0.09 2.66 8.14 -2.39 -0.02 2.64 15 25 H 0.20 2.68 8.06 -2.91 -0.02 2.66 15 26 H 0.27 0.61 8.06 -2.91 -0.02 0.58 15 Total: -1.00 -71.02 252.11 5.55 -65.47 By element: Atomic # 1 Polarization: -1.57 SS G_CDS: 1.16 Total: -0.41 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 3.09 Total: -32.03 kcal Atomic # 7 Polarization: -68.83 SS G_CDS: -0.31 Total: -69.14 kcal Atomic # 8 Polarization: 2.26 SS G_CDS: 0.80 Total: 3.06 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -11.58 SS G_CDS: -1.23 Total: -12.81 kcal Total: -71.02 5.55 -65.47 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388496165.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.641 kcal (2) G-P(sol) polarization free energy of solvation -71.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds