Wall clock time and date at job start Sun Mar 29 2020 21:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00132 * 2 1 4 4 H 1.48497 * 109.47013 * 270.00293 * 3 2 1 5 5 H 1.48507 * 109.47218 * 29.99950 * 3 2 1 6 6 H 1.48501 * 109.47355 * 150.00083 * 3 2 1 7 7 C 1.37883 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99692 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00039 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47195 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47201 * 180.02562 * 10 9 7 12 12 S 1.81398 * 109.46970 * 180.02562 * 11 10 9 13 13 C 1.76205 * 102.99750 * 180.02562 * 12 11 10 14 14 C 1.35945 * 126.68621 * 180.02562 * 13 12 11 15 15 N 1.33269 * 108.84715 * 179.97438 * 14 13 12 16 16 N 1.28725 * 110.01419 * 0.02562 * 15 14 13 17 17 N 1.36325 * 126.69086 * 359.97438 * 13 12 11 18 18 H 0.96999 * 126.84929 * 359.97438 * 17 13 12 19 19 H 0.97000 * 119.99566 * 359.97438 * 1 2 3 20 20 H 1.09006 * 109.47130 * 60.00189 * 9 7 2 21 21 H 1.09006 * 109.47065 * 300.00732 * 9 7 2 22 22 H 1.09000 * 109.46945 * 60.00418 * 10 9 7 23 23 H 1.08998 * 109.47723 * 300.00530 * 10 9 7 24 24 H 1.09000 * 109.46900 * 60.00303 * 11 10 9 25 25 H 1.09005 * 109.47398 * 300.00167 * 11 10 9 26 26 H 1.07995 * 125.57902 * 359.71221 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5516 -2.6366 0.0001 12 16 6.1562 -4.3468 -0.0005 13 6 7.9070 -4.1482 0.0004 14 6 8.8369 -5.1399 -0.0002 15 7 10.0514 -4.5912 0.0003 16 7 9.9549 -3.3076 0.0017 17 7 8.5931 -2.9702 0.0009 18 1 8.2152 -2.0769 0.0004 19 1 -0.4849 0.8401 0.0004 20 1 3.8753 -0.6797 0.8895 21 1 3.8746 -0.6807 -0.8905 22 1 3.6579 -3.1505 -0.8897 23 1 3.6585 -3.1503 0.8902 24 1 5.9148 -2.1227 0.8901 25 1 5.9150 -2.1228 -0.8899 26 1 8.6259 -6.1990 0.0031 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388519085.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:33 Heat of formation + Delta-G solvation = 74.987260 kcal Electronic energy + Delta-G solvation = -11278.056554 eV Core-core repulsion = 9098.656091 eV Total energy + Delta-G solvation = -2179.400463 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.98820 -34.93795 -33.34802 -32.26228 -30.68717 -28.34798 -23.78320 -23.59846 -22.02782 -20.49459 -19.15984 -17.02162 -16.44399 -15.76238 -15.05655 -14.75177 -14.52657 -14.03762 -12.84615 -12.56353 -12.48378 -12.26067 -11.53078 -11.40200 -11.18364 -11.00163 -10.70349 -10.19766 -9.99361 -9.96373 -9.84872 -9.39308 -8.68589 -7.77648 -6.18150 -4.18257 0.94864 0.99754 1.81156 2.34788 2.70390 3.18936 3.27137 3.27973 4.31072 4.58104 4.78059 4.87543 4.96731 5.00482 5.15387 5.52008 5.89715 6.07544 6.16560 6.48441 6.53309 6.99988 7.13195 7.59974 7.94641 8.36699 8.85633 9.42594 10.94974 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.063672 B = 0.005685 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.648715 B = 4923.972697 C = 5337.873220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.526 4.526 8 H 0.074 0.926 9 C -0.006 4.006 10 C -0.087 4.087 11 C -0.122 4.122 12 S -0.018 6.018 13 C 0.048 3.952 14 C -0.058 4.058 15 N -0.227 5.227 16 N -0.071 5.071 17 N -0.473 5.473 18 H 0.444 0.556 19 H 0.265 0.735 20 H 0.019 0.981 21 H 0.014 0.986 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.279 -6.185 0.021 14.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.564 4.564 8 H 0.092 0.908 9 C -0.045 4.045 10 C -0.127 4.127 11 C -0.270 4.270 12 S 0.216 5.784 13 C -0.199 4.199 14 C -0.222 4.222 15 N -0.096 5.096 16 N -0.053 5.053 17 N -0.193 5.193 18 H 0.290 0.710 19 H 0.075 0.925 20 H 0.037 0.963 21 H 0.032 0.968 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 14.008 -6.590 0.024 15.480 hybrid contribution -0.232 2.316 -0.020 2.328 sum 13.775 -4.273 0.005 14.423 Atomic orbital electron populations 1.69902 1.06298 1.27094 1.50383 1.25024 0.94754 0.99177 0.94381 0.86781 0.80262 0.83666 0.78540 1.20220 1.21200 1.19155 1.21046 0.89012 0.94719 1.51670 0.90763 1.19570 0.97620 0.90748 0.96590 1.21316 0.86813 1.01480 1.03072 1.24162 1.03995 0.93457 1.05414 1.86148 0.87577 1.13435 1.91259 1.24453 1.00358 0.89525 1.05555 1.23008 0.85953 1.00636 1.12623 1.74204 1.22972 1.01471 1.10974 1.81860 0.92481 1.07388 1.23539 1.48513 1.07088 1.08356 1.55353 0.70987 0.92525 0.96323 0.96768 0.91136 0.91117 0.89432 0.89443 0.79258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.71 13.96 55.43 0.77 -25.93 15 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 15 3 Si 0.88 20.54 27.47 -169.99 -4.67 15.87 15 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 15 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 6 H -0.27 -5.88 6.54 56.52 0.37 -5.51 15 7 C -0.53 -14.09 9.66 -34.44 -0.33 -14.42 15 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 15 9 C -0.01 -0.13 4.04 -27.89 -0.11 -0.24 15 10 C -0.09 -1.47 5.16 -26.73 -0.14 -1.60 15 11 C -0.12 -1.54 5.19 37.16 0.19 -1.35 15 12 S -0.02 -0.21 22.13 -107.50 -2.38 -2.59 15 13 C 0.05 0.56 7.34 -16.38 -0.12 0.44 15 14 C -0.06 -0.70 11.86 -17.75 -0.21 -0.91 15 15 N -0.23 -3.20 12.31 30.26 0.37 -2.83 15 16 N -0.07 -1.00 13.90 60.35 0.84 -0.16 15 17 N -0.47 -5.55 7.36 31.46 0.23 -5.32 15 18 H 0.44 4.09 8.36 -182.45 -1.52 2.57 15 19 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 20 H 0.02 0.39 7.20 -51.93 -0.37 0.02 15 21 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 15 22 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 23 H 0.07 1.20 8.14 -51.93 -0.42 0.78 15 24 H 0.09 1.02 8.14 -51.92 -0.42 0.60 15 25 H 0.09 1.01 8.14 -51.92 -0.42 0.59 15 26 H 0.19 1.71 8.06 -52.49 -0.42 1.28 15 LS Contribution 246.65 15.07 3.72 3.72 Total: -1.00 -30.08 246.65 -5.92 -36.00 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: -3.99 Total: -2.49 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -0.82 Total: -16.27 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 2.22 Total: -34.24 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Atomic # 16 Polarization: -0.21 SS G_CDS: -2.38 Total: -2.59 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -30.08 -5.92 -36.00 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388519085.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.989 kcal (2) G-P(sol) polarization free energy of solvation -30.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds