Wall clock time and date at job start Sun Mar 29 2020 21:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00132 * 2 1 4 4 H 1.48497 * 109.47013 * 270.00293 * 3 2 1 5 5 H 1.48507 * 109.47218 * 29.99950 * 3 2 1 6 6 H 1.48501 * 109.47355 * 150.00083 * 3 2 1 7 7 C 1.37883 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99692 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00039 * 179.97438 * 7 2 1 10 10 C 1.52993 * 109.47195 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47201 * 180.02562 * 10 9 7 12 12 S 1.81398 * 109.46970 * 180.02562 * 11 10 9 13 13 C 1.76205 * 102.99750 * 180.02562 * 12 11 10 14 14 C 1.35945 * 126.68621 * 180.02562 * 13 12 11 15 15 N 1.33269 * 108.84715 * 179.97438 * 14 13 12 16 16 N 1.28725 * 110.01419 * 0.02562 * 15 14 13 17 17 N 1.36325 * 126.69086 * 359.97438 * 13 12 11 18 18 H 0.96999 * 126.84929 * 359.97438 * 17 13 12 19 19 H 0.97000 * 119.99566 * 359.97438 * 1 2 3 20 20 H 1.09006 * 109.47130 * 60.00189 * 9 7 2 21 21 H 1.09006 * 109.47065 * 300.00732 * 9 7 2 22 22 H 1.09000 * 109.46945 * 60.00418 * 10 9 7 23 23 H 1.08998 * 109.47723 * 300.00530 * 10 9 7 24 24 H 1.09000 * 109.46900 * 60.00303 * 11 10 9 25 25 H 1.09005 * 109.47398 * 300.00167 * 11 10 9 26 26 H 1.07995 * 125.57902 * 359.71221 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6365 0.0001 11 6 5.5516 -2.6366 0.0001 12 16 6.1562 -4.3468 -0.0005 13 6 7.9070 -4.1482 0.0004 14 6 8.8369 -5.1399 -0.0002 15 7 10.0514 -4.5912 0.0003 16 7 9.9549 -3.3076 0.0017 17 7 8.5931 -2.9702 0.0009 18 1 8.2152 -2.0769 0.0004 19 1 -0.4849 0.8401 0.0004 20 1 3.8753 -0.6797 0.8895 21 1 3.8746 -0.6807 -0.8905 22 1 3.6579 -3.1505 -0.8897 23 1 3.6585 -3.1503 0.8902 24 1 5.9148 -2.1227 0.8901 25 1 5.9150 -2.1228 -0.8899 26 1 8.6259 -6.1990 0.0031 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388519085.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:32 Heat of formation + Delta-G solvation = 54.312372 kcal Electronic energy + Delta-G solvation = -11278.953084 eV Core-core repulsion = 9098.656091 eV Total energy + Delta-G solvation = -2180.296993 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.93323 -36.47903 -34.42112 -34.07353 -31.62595 -29.99101 -25.32353 -24.59831 -23.14119 -21.96480 -20.11484 -18.95071 -17.53456 -16.74406 -16.42186 -16.24149 -15.48539 -15.33796 -14.66682 -14.07302 -13.89793 -13.34102 -12.97024 -12.76441 -12.45832 -12.10341 -11.91203 -11.77151 -11.60547 -11.38101 -11.32895 -10.91274 -10.77073 -8.68949 -8.29490 -6.34597 -0.01540 0.05187 0.85516 1.37124 1.38988 1.40541 1.49612 1.84341 2.35703 3.06471 3.68354 3.81197 3.87370 3.88270 4.10209 4.41094 4.68630 4.73732 4.97591 5.04143 5.42320 5.50379 5.63929 5.68480 6.26274 6.74661 6.99204 7.30232 8.87237 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.063672 B = 0.005685 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.648715 B = 4923.972697 C = 5337.873220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.002 3.998 3 Si 0.952 3.048 4 H -0.268 1.268 5 H -0.289 1.289 6 H -0.239 1.239 7 C -0.535 4.535 8 H 0.033 0.967 9 C -0.006 4.006 10 C -0.081 4.081 11 C -0.121 4.121 12 S 0.003 5.997 13 C 0.047 3.953 14 C -0.059 4.059 15 N -0.249 5.249 16 N -0.096 5.096 17 N -0.463 5.463 18 H 0.454 0.546 19 H 0.266 0.734 20 H 0.028 0.972 21 H 0.027 0.973 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.220 -5.723 0.027 16.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.195 4.195 3 Si 0.775 3.225 4 H -0.193 1.193 5 H -0.216 1.216 6 H -0.162 1.162 7 C -0.574 4.574 8 H 0.051 0.949 9 C -0.046 4.046 10 C -0.120 4.120 11 C -0.270 4.270 12 S 0.237 5.763 13 C -0.200 4.200 14 C -0.224 4.224 15 N -0.118 5.118 16 N -0.077 5.077 17 N -0.185 5.185 18 H 0.303 0.697 19 H 0.074 0.926 20 H 0.046 0.954 21 H 0.045 0.955 22 H 0.082 0.918 23 H 0.082 0.918 24 H 0.122 0.878 25 H 0.122 0.878 26 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 15.980 -6.128 0.031 17.115 hybrid contribution -0.924 2.049 -0.024 2.248 sum 15.056 -4.079 0.007 15.599 Atomic orbital electron populations 1.70077 1.08490 1.28182 1.52570 1.26062 0.95597 1.03707 0.94156 0.85639 0.79691 0.78021 0.79140 1.19278 1.21561 1.16216 1.21498 0.92258 0.93130 1.50472 0.94900 1.19517 0.93745 0.93975 0.97332 1.21039 0.89945 0.98528 1.02508 1.23975 1.00857 0.94952 1.07178 1.86163 0.87063 1.11827 1.91224 1.24527 1.00380 0.89602 1.05507 1.23512 0.85299 1.01983 1.11578 1.74205 1.24085 1.01709 1.11784 1.81824 0.93506 1.07576 1.24780 1.48519 1.06521 1.08974 1.54464 0.69732 0.92554 0.95370 0.95515 0.91825 0.91837 0.87809 0.87757 0.76792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.13 13.96 21.45 0.30 -57.83 15 2 C 0.00 0.08 5.47 84.66 0.46 0.55 15 3 Si 0.95 41.48 27.47 68.60 1.88 43.36 15 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 15 5 H -0.29 -12.68 7.11 99.48 0.71 -11.98 15 6 H -0.24 -9.26 6.54 99.48 0.65 -8.61 15 7 C -0.54 -28.93 9.66 25.60 0.25 -28.68 15 8 H 0.03 1.97 7.99 -2.91 -0.02 1.95 15 9 C -0.01 -0.26 4.04 29.84 0.12 -0.14 15 10 C -0.08 -2.57 5.16 30.59 0.16 -2.41 15 11 C -0.12 -2.67 5.19 71.98 0.37 -2.29 15 12 S 0.00 0.07 22.13 -56.49 -1.25 -1.18 15 13 C 0.05 0.98 7.34 83.46 0.61 1.60 15 14 C -0.06 -1.27 11.86 83.94 1.00 -0.28 15 15 N -0.25 -6.62 12.31 -58.19 -0.72 -7.33 15 16 N -0.10 -2.53 13.90 37.02 0.51 -2.02 15 17 N -0.46 -9.65 7.36 -54.37 -0.40 -10.05 15 18 H 0.45 6.98 8.36 -213.19 -1.78 5.20 15 19 H 0.27 15.15 8.31 -92.71 -0.77 14.38 15 20 H 0.03 1.10 7.20 -2.38 -0.02 1.08 15 21 H 0.03 1.02 7.57 -2.38 -0.02 1.01 15 22 H 0.06 2.08 8.14 -2.39 -0.02 2.07 15 23 H 0.06 2.08 8.14 -2.39 -0.02 2.06 15 24 H 0.10 2.00 8.14 -2.39 -0.02 1.98 15 25 H 0.10 1.99 8.14 -2.39 -0.02 1.97 15 26 H 0.22 3.24 8.06 -2.91 -0.02 3.22 15 Total: -1.00 -65.55 246.65 2.66 -62.89 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -0.65 Total: 3.81 kcal Atomic # 6 Polarization: -34.63 SS G_CDS: 2.97 Total: -31.66 kcal Atomic # 7 Polarization: -76.92 SS G_CDS: -0.30 Total: -77.23 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 1.88 Total: 43.36 kcal Atomic # 16 Polarization: 0.07 SS G_CDS: -1.25 Total: -1.18 kcal Total: -65.55 2.66 -62.89 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388519085.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.204 kcal (2) G-P(sol) polarization free energy of solvation -65.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds