Wall clock time and date at job start Sun Mar 29 2020 21:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34782 * 119.99929 * 2 1 4 4 O 1.21272 * 119.99931 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99693 * 180.02562 * 3 2 1 6 6 C 1.50695 * 115.54882 * 325.58386 * 5 3 2 7 7 O 1.21209 * 119.99895 * 214.41364 * 6 5 3 8 8 O 1.34314 * 120.00503 * 34.42145 * 6 5 3 9 9 C 1.34916 * 117.00261 * 179.97438 * 8 6 5 10 10 H 1.07999 * 120.00095 * 359.97438 * 9 8 6 11 11 C 1.38755 * 120.00017 * 179.97438 * 9 8 6 12 12 N 1.31441 * 120.00431 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 119.99779 * 359.72453 * 11 9 8 14 14 H 1.48500 * 109.47088 * 90.00215 * 13 11 9 15 15 H 1.48505 * 109.47152 * 209.99692 * 13 11 9 16 16 H 1.48494 * 109.47142 * 329.99692 * 13 11 9 17 17 C 1.52994 * 117.49401 * 111.25419 * 5 3 2 18 18 C 1.52999 * 117.49664 * 179.91337 * 5 3 2 19 19 H 1.09003 * 109.47194 * 59.99457 * 1 2 3 20 20 H 1.08999 * 109.47130 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46626 * 299.99770 * 1 2 3 22 22 H 0.96998 * 120.00255 * 180.02562 * 2 1 3 23 23 H 0.97000 * 120.00093 * 179.97438 * 12 11 9 24 24 H 1.09009 * 117.49863 * 214.99792 * 17 5 3 25 25 H 1.09000 * 117.50448 * 0.02562 * 17 5 3 26 26 H 1.08998 * 117.49706 * 359.97438 * 18 5 3 27 27 H 1.08992 * 117.49478 * 144.99574 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6460 1.1672 -0.0006 6 6 4.2962 0.0454 0.7674 7 8 5.3391 0.2376 1.3543 8 8 3.7201 -1.1675 0.8013 9 6 4.3543 -2.1273 1.5062 10 1 5.2826 -1.9027 2.0104 11 6 3.8139 -3.4030 1.5832 12 7 4.4320 -4.3382 2.2695 13 14 2.2044 -3.7893 0.7174 14 1 2.4854 -4.2610 -0.6624 15 1 1.4820 -4.8496 1.4653 16 1 1.3663 -2.5648 0.6610 17 6 4.3518 1.6594 -1.2656 18 6 4.3524 2.5243 -0.0026 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 1.9500 -0.8400 -0.0004 23 1 4.0540 -5.2299 2.3237 24 1 5.2867 1.1719 -1.5424 25 1 3.7263 1.9837 -2.0972 26 1 3.7272 3.4171 -0.0039 27 1 5.2874 2.6057 0.5515 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388666092.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:10 Heat of formation + Delta-G solvation = -108.286740 kcal Electronic energy + Delta-G solvation = -14540.235381 eV Core-core repulsion = 11877.841939 eV Total energy + Delta-G solvation = -2662.393442 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.94938 -40.47286 -38.23661 -36.62874 -35.64442 -34.53597 -29.20358 -27.74798 -25.40522 -23.58590 -22.91209 -21.13028 -20.17242 -19.56018 -17.66130 -17.28346 -16.80942 -16.57389 -16.16079 -15.86762 -15.50056 -14.92200 -14.45602 -13.91460 -13.73305 -13.38887 -13.14015 -12.58475 -12.52265 -12.43664 -12.24211 -11.83981 -11.70784 -11.41790 -10.96073 -10.86996 -10.19398 -8.57585 -6.46450 0.96860 1.29815 1.34355 1.45865 1.51451 2.02116 2.17715 2.26744 2.61784 2.90339 3.46952 3.51868 3.82159 4.10393 4.41010 4.55383 4.58492 4.65908 4.81784 4.85027 5.08186 5.34211 5.41950 5.81984 6.36612 6.39233 6.74665 7.02428 7.44783 8.54914 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.030442 B = 0.013413 C = 0.009940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.567435 B = 2086.967145 C = 2816.212517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.729 5.729 3 C 0.558 3.442 4 O -0.560 6.560 5 C -0.198 4.198 6 C 0.449 3.551 7 O -0.559 6.559 8 O -0.248 6.248 9 C -0.408 4.408 10 H 0.059 0.941 11 C 0.017 3.983 12 N -0.914 5.914 13 Si 0.979 3.021 14 H -0.256 1.256 15 H -0.269 1.269 16 H -0.234 1.234 17 C -0.098 4.098 18 C -0.103 4.103 19 H 0.074 0.926 20 H 0.097 0.903 21 H 0.058 0.942 22 H 0.410 0.590 23 H 0.290 0.710 24 H 0.118 0.882 25 H 0.141 0.859 26 H 0.133 0.867 27 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.011 7.072 -9.121 14.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.384 5.384 3 C 0.344 3.656 4 O -0.441 6.441 5 C -0.202 4.202 6 C 0.296 3.704 7 O -0.454 6.454 8 O -0.157 6.157 9 C -0.483 4.483 10 H 0.077 0.923 11 C -0.183 4.183 12 N -0.553 5.553 13 Si 0.799 3.201 14 H -0.180 1.180 15 H -0.194 1.194 16 H -0.158 1.158 17 C -0.135 4.135 18 C -0.140 4.140 19 H 0.093 0.907 20 H 0.116 0.884 21 H 0.076 0.924 22 H 0.251 0.749 23 H 0.100 0.900 24 H 0.137 0.863 25 H 0.158 0.842 26 H 0.151 0.849 27 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.185 7.578 -8.870 14.252 hybrid contribution 0.300 -1.092 0.511 1.242 sum -7.885 6.487 -8.359 13.196 Atomic orbital electron populations 1.21815 0.77840 1.04111 1.02685 1.46402 1.09347 1.09203 1.73421 1.19091 0.87143 0.83985 0.75430 1.90627 1.69635 1.31768 1.52039 1.21077 0.92641 0.97139 1.09379 1.22407 0.83855 0.83166 0.81016 1.90595 1.25603 1.83333 1.45838 1.83213 1.50181 1.18920 1.63379 1.20303 1.07829 0.89377 1.30824 0.92336 1.25620 1.03294 0.92896 0.96531 1.69697 1.41594 1.04133 1.39848 0.85212 0.76697 0.79503 0.78719 1.18048 1.19402 1.15767 1.23366 1.01345 0.98847 0.89923 1.23236 1.01211 0.90014 0.99507 0.90696 0.88392 0.92351 0.74908 0.89960 0.86339 0.84151 0.84873 0.86969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.03 10.70 127.77 1.37 3.39 15 2 N -0.73 -24.83 5.53 -484.50 -2.68 -27.50 15 3 C 0.56 20.17 7.38 87.66 0.65 20.81 15 4 O -0.56 -21.22 16.26 -3.01 -0.05 -21.27 15 5 C -0.20 -7.12 2.56 -53.68 -0.14 -7.26 15 6 C 0.45 21.19 7.43 71.23 0.53 21.72 15 7 O -0.56 -30.09 15.49 20.78 0.32 -29.76 15 8 O -0.25 -12.38 5.75 14.89 0.09 -12.29 15 9 C -0.41 -23.88 10.10 67.94 0.69 -23.19 15 10 H 0.06 3.96 7.09 -2.91 -0.02 3.94 15 11 C 0.02 0.94 5.49 84.87 0.47 1.40 15 12 N -0.91 -53.12 13.96 21.62 0.30 -52.82 15 13 Si 0.98 39.20 28.22 68.60 1.94 41.14 15 14 H -0.26 -9.68 7.11 99.48 0.71 -8.97 15 15 H -0.27 -10.33 7.11 99.48 0.71 -9.62 15 16 H -0.23 -8.23 5.61 99.48 0.56 -7.67 15 17 C -0.10 -2.54 9.94 30.62 0.30 -2.24 15 18 C -0.10 -2.97 9.56 30.62 0.29 -2.68 15 19 H 0.07 1.70 8.14 -2.39 -0.02 1.68 15 20 H 0.10 2.05 8.14 -2.39 -0.02 2.03 15 21 H 0.06 1.52 8.14 -2.39 -0.02 1.50 15 22 H 0.41 15.00 3.96 -92.71 -0.37 14.63 15 23 H 0.29 15.19 8.31 -92.71 -0.77 14.42 15 24 H 0.12 2.95 8.14 -2.38 -0.02 2.94 15 25 H 0.14 2.82 8.14 -2.39 -0.02 2.80 15 26 H 0.13 3.42 7.67 -2.39 -0.02 3.40 15 27 H 0.11 3.36 7.67 -2.39 -0.02 3.34 15 Total: -1.00 -70.87 243.62 4.76 -66.11 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: 0.68 Total: 24.44 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 4.16 Total: 11.96 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -2.38 Total: -80.32 kcal Atomic # 8 Polarization: -63.69 SS G_CDS: 0.36 Total: -63.33 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 1.94 Total: 41.14 kcal Total: -70.87 4.76 -66.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388666092.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.173 kcal (2) G-P(sol) polarization free energy of solvation -70.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds