Wall clock time and date at job start Sun Mar 29 2020 22:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 113.00226 * 2 1 4 4 O 1.21279 * 119.99926 * 228.17663 * 3 2 1 5 5 N 1.34775 * 119.99773 * 48.17263 * 3 2 1 6 6 C 1.46496 * 119.99642 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.46995 * 180.02562 * 6 5 3 8 8 C 1.50698 * 109.47184 * 180.02562 * 7 6 5 9 9 H 1.08005 * 119.99819 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00046 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00192 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99979 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47309 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47510 * 119.99847 * 12 10 8 15 15 H 1.48506 * 109.47246 * 239.99882 * 12 10 8 16 16 C 1.54035 * 113.92558 * 131.93416 * 2 1 3 17 17 O 1.44178 * 85.51937 * 91.65700 * 16 2 1 18 18 C 1.44177 * 93.34118 * 24.19450 * 17 16 2 19 19 H 1.09006 * 109.47044 * 69.66374 * 1 2 3 20 20 H 1.09000 * 109.47533 * 189.66630 * 1 2 3 21 21 H 1.09000 * 109.46935 * 309.67088 * 1 2 3 22 22 H 0.96998 * 120.00166 * 0.02562 * 5 3 2 23 23 H 1.09001 * 109.47464 * 60.00642 * 6 5 3 24 24 H 1.09001 * 109.47459 * 300.00357 * 6 5 3 25 25 H 1.09001 * 109.47002 * 299.99701 * 7 6 5 26 26 H 1.08993 * 109.46955 * 60.00138 * 7 6 5 27 27 H 0.96996 * 120.00505 * 179.97438 * 11 10 8 28 28 H 1.09000 * 113.86352 * 205.80511 * 16 2 1 29 29 H 1.08995 * 113.86266 * 337.51298 * 16 2 1 30 30 H 1.08997 * 113.86931 * 221.66339 * 18 17 16 31 31 H 1.08993 * 113.98675 * 89.96614 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1189 1.3872 0.0000 4 8 3.0005 1.6717 -0.7827 5 7 1.6657 2.3116 0.8698 6 6 2.2378 3.6603 0.8694 7 6 1.5521 4.5054 1.9448 8 6 2.1401 5.8930 1.9440 9 1 2.9248 6.1465 1.2465 10 6 1.6772 6.8384 2.8344 11 7 0.7221 6.5295 3.6840 12 14 2.4066 8.5581 2.8338 13 1 3.4588 8.6492 1.7898 14 1 1.3381 9.5490 2.5481 15 1 3.0033 8.8431 4.1635 16 6 2.1547 -0.9409 1.0474 17 8 2.1470 -1.9297 -0.0019 18 6 2.1520 -0.9398 -1.0501 19 1 -0.3633 0.3572 -0.9637 20 1 -0.3634 -1.0130 0.1725 21 1 -0.3633 0.6560 0.7910 22 1 0.9608 2.0840 1.4960 23 1 2.0842 4.1198 -0.1070 24 1 3.3057 3.6020 1.0796 25 1 0.4841 4.5638 1.7349 26 1 1.7060 4.0458 2.9210 27 1 0.3966 7.1945 4.3107 28 1 3.1538 -0.6443 1.3665 29 1 1.4916 -1.1763 1.8799 30 1 1.4868 -1.1741 -1.8812 31 1 3.1493 -0.6416 -1.3732 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388741277.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:22 Heat of formation + Delta-G solvation = -65.527870 kcal Electronic energy + Delta-G solvation = -14083.243689 eV Core-core repulsion = 11558.537505 eV Total energy + Delta-G solvation = -2524.706184 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.12297 -38.48050 -34.94390 -33.05159 -32.13021 -29.47458 -26.71856 -26.45928 -24.96438 -22.13961 -20.90065 -18.97039 -17.48166 -16.52466 -16.17032 -16.05861 -15.22135 -14.70967 -14.58571 -14.08155 -13.64061 -13.11830 -12.63896 -12.51828 -12.34320 -12.14996 -11.36759 -11.24023 -11.08843 -10.95062 -10.65059 -10.39021 -9.93542 -9.76306 -9.43604 -9.14079 -8.61013 -8.41273 -6.13172 -4.16188 2.78404 3.25955 3.33595 3.38173 3.51680 3.57893 4.04759 4.38705 4.67536 4.92306 4.98711 5.24133 5.26841 5.33512 5.54884 5.58116 5.65939 5.87688 5.98608 6.00213 6.28141 6.28638 6.67663 6.83357 7.46489 7.56262 7.84640 7.92118 8.22950 8.53840 8.89986 9.49091 10.98483 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.069308 B = 0.005555 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.897240 B = 5038.848360 C = 5218.456435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.159 4.159 3 C 0.514 3.486 4 O -0.548 6.548 5 N -0.716 5.716 6 C 0.120 3.880 7 C 0.012 3.988 8 C -0.522 4.522 9 H 0.060 0.940 10 C 0.059 3.941 11 N -0.894 5.894 12 Si 0.897 3.103 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.283 1.283 16 C 0.057 3.943 17 O -0.379 6.379 18 C 0.062 3.938 19 H 0.068 0.932 20 H 0.073 0.927 21 H 0.069 0.931 22 H 0.398 0.602 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.262 0.738 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.291 -12.846 -4.626 13.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.163 4.163 3 C 0.298 3.702 4 O -0.426 6.426 5 N -0.366 5.366 6 C -0.002 4.002 7 C -0.025 4.025 8 C -0.561 4.561 9 H 0.078 0.922 10 C -0.143 4.143 11 N -0.533 5.533 12 Si 0.724 3.276 13 H -0.196 1.196 14 H -0.209 1.209 15 H -0.209 1.209 16 C -0.020 4.020 17 O -0.298 6.298 18 C -0.015 4.015 19 H 0.087 0.913 20 H 0.092 0.908 21 H 0.088 0.912 22 H 0.232 0.768 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.762 -12.815 -5.040 13.792 hybrid contribution -0.057 1.172 0.455 1.258 sum -0.819 -11.643 -4.586 12.541 Atomic orbital electron populations 1.21585 0.90287 1.03248 1.03338 1.24067 0.99034 0.93969 0.99215 1.20280 0.82872 0.85995 0.81008 1.90670 1.31333 1.80663 1.39954 1.46370 1.40076 1.13188 1.36943 1.21763 0.97842 0.79383 1.01259 1.19331 0.96170 0.94242 0.92786 1.21085 1.20635 0.95585 1.18747 0.92196 1.24994 0.94944 0.99085 0.95238 1.69957 1.27768 1.34708 1.20873 0.86456 0.79125 0.83995 0.77991 1.19575 1.20901 1.20903 1.23956 1.00834 0.85383 0.91863 1.89659 1.95819 1.27422 1.16901 1.23966 1.01638 0.84418 0.91477 0.91257 0.90846 0.91187 0.76817 0.92478 0.92508 0.95925 0.95921 0.92860 0.89649 0.88243 0.88759 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 9.05 37.16 0.34 -0.94 16 2 C -0.16 -1.98 1.31 -154.58 -0.20 -2.18 16 3 C 0.51 8.47 6.95 -10.98 -0.08 8.39 16 4 O -0.55 -11.04 15.89 5.56 0.09 -10.95 16 5 N -0.72 -12.13 5.44 -60.29 -0.33 -12.46 16 6 C 0.12 2.50 5.61 -4.04 -0.02 2.48 16 7 C 0.01 0.30 5.09 -27.88 -0.14 0.15 16 8 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 9 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 10 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 11 N -0.89 -25.86 13.29 55.43 0.74 -25.13 16 12 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 13 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 C 0.06 0.65 8.32 37.61 0.31 0.96 16 17 O -0.38 -4.90 12.38 -35.23 -0.44 -5.34 16 18 C 0.06 0.75 8.15 37.61 0.31 1.06 16 19 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 20 H 0.07 0.65 8.06 -51.93 -0.42 0.23 16 21 H 0.07 0.66 7.03 -51.93 -0.36 0.30 16 22 H 0.40 5.82 7.36 -40.82 -0.30 5.52 16 23 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 24 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 29 H 0.10 0.91 8.10 -51.93 -0.42 0.49 16 30 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 31 H 0.10 1.27 7.40 -51.93 -0.38 0.88 16 LS Contribution 267.81 15.07 4.04 4.04 Total: -1.00 -31.24 267.81 -5.21 -36.45 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -4.38 Total: 0.39 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 0.10 Total: -3.17 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.41 Total: -37.59 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.35 Total: -16.28 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.24 -5.21 -36.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388741277.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.077 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds