Wall clock time and date at job start Sun Mar 29 2020 22:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 113.00226 * 2 1 4 4 O 1.21279 * 119.99926 * 228.17663 * 3 2 1 5 5 N 1.34775 * 119.99773 * 48.17263 * 3 2 1 6 6 C 1.46496 * 119.99642 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.46995 * 180.02562 * 6 5 3 8 8 C 1.50698 * 109.47184 * 180.02562 * 7 6 5 9 9 H 1.08005 * 119.99819 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00046 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00192 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99979 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47309 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47510 * 119.99847 * 12 10 8 15 15 H 1.48506 * 109.47246 * 239.99882 * 12 10 8 16 16 C 1.54035 * 113.92558 * 131.93416 * 2 1 3 17 17 O 1.44178 * 85.51937 * 91.65700 * 16 2 1 18 18 C 1.44177 * 93.34118 * 24.19450 * 17 16 2 19 19 H 1.09006 * 109.47044 * 69.66374 * 1 2 3 20 20 H 1.09000 * 109.47533 * 189.66630 * 1 2 3 21 21 H 1.09000 * 109.46935 * 309.67088 * 1 2 3 22 22 H 0.96998 * 120.00166 * 0.02562 * 5 3 2 23 23 H 1.09001 * 109.47464 * 60.00642 * 6 5 3 24 24 H 1.09001 * 109.47459 * 300.00357 * 6 5 3 25 25 H 1.09001 * 109.47002 * 299.99701 * 7 6 5 26 26 H 1.08993 * 109.46955 * 60.00138 * 7 6 5 27 27 H 0.96996 * 120.00505 * 179.97438 * 11 10 8 28 28 H 1.09000 * 113.86352 * 205.80511 * 16 2 1 29 29 H 1.08995 * 113.86266 * 337.51298 * 16 2 1 30 30 H 1.08997 * 113.86931 * 221.66339 * 18 17 16 31 31 H 1.08993 * 113.98675 * 89.96614 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1189 1.3872 0.0000 4 8 3.0005 1.6717 -0.7827 5 7 1.6657 2.3116 0.8698 6 6 2.2378 3.6603 0.8694 7 6 1.5521 4.5054 1.9448 8 6 2.1401 5.8930 1.9440 9 1 2.9248 6.1465 1.2465 10 6 1.6772 6.8384 2.8344 11 7 0.7221 6.5295 3.6840 12 14 2.4066 8.5581 2.8338 13 1 3.4588 8.6492 1.7898 14 1 1.3381 9.5490 2.5481 15 1 3.0033 8.8431 4.1635 16 6 2.1547 -0.9409 1.0474 17 8 2.1470 -1.9297 -0.0019 18 6 2.1520 -0.9398 -1.0501 19 1 -0.3633 0.3572 -0.9637 20 1 -0.3634 -1.0130 0.1725 21 1 -0.3633 0.6560 0.7910 22 1 0.9608 2.0840 1.4960 23 1 2.0842 4.1198 -0.1070 24 1 3.3057 3.6020 1.0796 25 1 0.4841 4.5638 1.7349 26 1 1.7060 4.0458 2.9210 27 1 0.3966 7.1945 4.3107 28 1 3.1538 -0.6443 1.3665 29 1 1.4916 -1.1763 1.8799 30 1 1.4868 -1.1741 -1.8812 31 1 3.1493 -0.6416 -1.3732 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388741277.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:22 Heat of formation + Delta-G solvation = -88.302274 kcal Electronic energy + Delta-G solvation = -14084.231261 eV Core-core repulsion = 11558.537505 eV Total energy + Delta-G solvation = -2525.693756 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.19451 -39.81406 -36.63313 -34.90562 -33.32840 -31.24873 -27.66057 -27.36672 -26.82911 -23.69186 -22.55341 -20.20393 -18.68757 -18.44955 -17.28181 -17.13296 -16.59325 -16.47527 -16.17223 -15.53096 -14.86004 -14.46085 -14.32265 -13.75314 -13.42147 -13.20386 -13.02481 -12.95311 -12.55005 -12.43015 -12.25503 -11.88454 -11.65093 -11.44084 -10.90859 -10.62033 -10.55213 -10.06983 -8.25341 -6.35692 1.40496 1.41941 1.48253 1.54594 2.18705 2.43387 2.57858 3.05848 3.09765 3.68967 3.83347 4.05508 4.33179 4.45744 4.46676 4.52108 4.74539 4.78327 4.79222 4.83484 4.96543 5.04793 5.20725 5.26296 5.46855 5.56663 5.77276 6.14934 6.55296 6.77673 7.18680 7.33985 8.86658 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.069308 B = 0.005555 C = 0.005364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.897240 B = 5038.848360 C = 5218.456435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.152 4.152 3 C 0.514 3.486 4 O -0.587 6.587 5 N -0.711 5.711 6 C 0.138 3.862 7 C 0.023 3.977 8 C -0.547 4.547 9 H 0.057 0.943 10 C 0.009 3.991 11 N -0.926 5.926 12 Si 0.964 3.036 13 H -0.266 1.266 14 H -0.276 1.276 15 H -0.277 1.277 16 C 0.058 3.942 17 O -0.388 6.388 18 C 0.060 3.940 19 H 0.071 0.929 20 H 0.092 0.908 21 H 0.075 0.925 22 H 0.411 0.589 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.266 0.734 28 H 0.079 0.921 29 H 0.128 0.872 30 H 0.117 0.883 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.748 -13.282 -4.607 14.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.155 4.155 3 C 0.301 3.699 4 O -0.468 6.468 5 N -0.361 5.361 6 C 0.015 3.985 7 C -0.015 4.015 8 C -0.585 4.585 9 H 0.076 0.924 10 C -0.190 4.190 11 N -0.566 5.566 12 Si 0.789 3.211 13 H -0.191 1.191 14 H -0.202 1.202 15 H -0.202 1.202 16 C -0.019 4.019 17 O -0.307 6.307 18 C -0.017 4.017 19 H 0.090 0.910 20 H 0.111 0.889 21 H 0.094 0.906 22 H 0.247 0.753 23 H 0.065 0.935 24 H 0.064 0.936 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.146 0.854 30 H 0.135 0.865 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.236 -13.276 -5.013 14.245 hybrid contribution 0.091 1.270 0.445 1.348 sum -1.145 -12.007 -4.569 12.898 Atomic orbital electron populations 1.21636 0.88056 1.04673 1.03816 1.24156 1.00587 0.90663 1.00142 1.21023 0.82026 0.87200 0.79650 1.90653 1.33104 1.81630 1.41380 1.46184 1.40395 1.11857 1.37662 1.21255 0.96936 0.81009 0.99321 1.19139 0.95447 0.93786 0.93123 1.21494 1.20890 0.97245 1.18919 0.92429 1.25841 0.95256 1.03149 0.94769 1.70050 1.28836 1.36186 1.21493 0.85412 0.78489 0.79023 0.78212 1.19061 1.20196 1.20218 1.24118 1.01118 0.84425 0.92225 1.89657 1.95813 1.27835 1.17394 1.24033 1.01395 0.84146 0.92101 0.90992 0.88896 0.90609 0.75268 0.93534 0.93578 0.97166 0.97173 0.92504 0.90321 0.85390 0.86486 0.90148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.15 9.05 71.98 0.65 -1.50 16 2 C -0.15 -3.49 1.31 -52.22 -0.07 -3.56 16 3 C 0.51 16.57 6.95 87.66 0.61 17.18 16 4 O -0.59 -23.71 15.89 -3.03 -0.05 -23.76 16 5 N -0.71 -23.65 5.44 -463.06 -2.52 -26.17 16 6 C 0.14 5.84 5.61 86.38 0.48 6.32 16 7 C 0.02 1.11 5.09 29.85 0.15 1.26 16 8 C -0.55 -30.22 9.11 25.60 0.23 -29.98 16 9 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 10 C 0.01 0.48 5.46 84.65 0.46 0.94 16 11 N -0.93 -53.55 13.29 21.45 0.28 -53.27 16 12 Si 0.96 43.15 29.54 68.60 2.03 45.18 16 13 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 14 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 15 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 16 C 0.06 1.20 8.32 72.27 0.60 1.80 16 17 O -0.39 -9.19 12.38 -148.98 -1.84 -11.04 16 18 C 0.06 1.37 8.15 72.28 0.59 1.96 16 19 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 20 H 0.09 1.29 8.06 -2.39 -0.02 1.27 16 21 H 0.08 1.23 7.03 -2.39 -0.02 1.21 16 22 H 0.41 11.54 7.36 -92.71 -0.68 10.86 16 23 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 28 H 0.08 1.73 8.09 -2.39 -0.02 1.71 16 29 H 0.13 1.92 8.10 -2.39 -0.02 1.90 16 30 H 0.12 2.11 8.10 -2.39 -0.02 2.09 16 31 H 0.08 2.09 7.40 -2.39 -0.02 2.08 16 Total: -1.00 -66.11 267.81 2.05 -64.06 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 0.44 Total: 10.57 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: 3.72 Total: -5.57 kcal Atomic # 7 Polarization: -77.21 SS G_CDS: -2.24 Total: -79.44 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -1.89 Total: -34.79 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -66.11 2.05 -64.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388741277.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.243 kcal (2) G-P(sol) polarization free energy of solvation -66.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds