Wall clock time and date at job start Sun Mar 29 2020 22:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42908 * 109.46807 * 2 1 4 4 C 1.52997 * 109.47582 * 239.99766 * 2 1 3 5 5 C 1.50704 * 109.47147 * 60.00186 * 4 2 1 6 6 O 1.21294 * 119.99655 * 359.97438 * 5 4 2 7 7 N 1.34769 * 120.00430 * 180.02562 * 5 4 2 8 8 C 1.37098 * 120.00345 * 180.02562 * 7 5 4 9 9 H 1.07997 * 119.99876 * 359.97438 * 8 7 5 10 10 C 1.38953 * 120.00044 * 179.97438 * 8 7 5 11 11 N 1.31408 * 120.00026 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99995 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47197 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47227 * 119.99907 * 12 10 8 15 15 H 1.48503 * 109.47286 * 240.00067 * 12 10 8 16 16 C 1.53003 * 109.47107 * 119.99644 * 2 1 3 17 17 C 1.53001 * 117.51964 * 231.28841 * 16 2 1 18 18 C 1.52999 * 60.00190 * 107.47982 * 17 16 2 19 19 H 1.08996 * 109.47501 * 299.99752 * 1 2 3 20 20 H 1.09004 * 109.47169 * 60.00511 * 1 2 3 21 21 H 1.09005 * 109.46926 * 179.97438 * 1 2 3 22 22 H 0.96700 * 113.99867 * 179.97438 * 3 2 1 23 23 H 1.09000 * 109.47179 * 179.97438 * 4 2 1 24 24 H 1.08996 * 109.47327 * 300.00426 * 4 2 1 25 25 H 0.97001 * 119.99820 * 359.97438 * 7 5 4 26 26 H 0.97002 * 119.99816 * 180.02562 * 11 10 8 27 27 H 1.09002 * 115.54973 * 85.58625 * 16 2 1 28 28 H 1.09001 * 117.49733 * 214.97413 * 17 16 2 29 29 H 1.08995 * 117.49577 * 359.97438 * 17 16 2 30 30 H 1.09004 * 117.50150 * 252.51496 * 18 17 16 31 31 H 1.09004 * 117.51638 * 107.47550 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0109 -2.4797 6 8 0.8401 0.9750 -2.3684 7 7 1.8630 -0.4716 -3.7037 8 6 1.4066 0.1750 -4.8232 9 1 0.7860 1.0533 -4.7242 10 6 1.7423 -0.2998 -6.0852 11 7 2.4978 -1.3682 -6.2057 12 14 1.1198 0.5808 -7.6105 13 1 0.2942 1.7472 -7.2064 14 1 2.2748 1.0475 -8.4187 15 1 0.2948 -0.3526 -8.4189 16 6 2.0400 -0.7212 1.2493 17 6 3.0757 0.0040 2.1109 18 6 1.6373 -0.1482 2.6097 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 2.9702 1.4238 0.0004 23 1 3.1301 -0.7208 -1.2493 24 1 1.6767 -1.7489 -1.2492 25 1 2.4207 -1.2603 -3.7927 26 1 2.7325 -1.6993 -7.0867 27 1 2.1253 -1.8046 1.1648 28 1 3.8425 -0.6023 2.5932 29 1 3.3942 0.9949 1.7876 30 1 1.0093 0.7428 2.6145 31 1 1.4574 -0.8547 3.4200 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388839588.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:02 Heat of formation + Delta-G solvation = -91.265954 kcal Electronic energy + Delta-G solvation = -14481.512132 eV Core-core repulsion = 11955.689861 eV Total energy + Delta-G solvation = -2525.822271 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.84298 -39.18472 -36.12894 -35.63364 -33.29824 -32.77859 -29.17455 -26.65861 -24.40780 -23.09294 -21.09067 -20.71197 -19.86543 -18.04631 -17.31476 -16.77603 -16.35356 -16.07381 -15.59932 -15.23850 -14.65753 -14.16830 -13.70118 -13.42238 -13.13037 -13.03338 -12.70880 -12.55413 -12.39117 -12.22273 -12.11409 -11.82765 -11.43715 -11.31387 -10.95547 -10.73982 -10.06725 -9.93456 -8.45046 -5.92905 1.36652 1.41144 1.55496 2.11980 2.30759 2.89615 3.15375 3.22463 3.54156 3.82151 3.93360 4.07681 4.20514 4.35943 4.50128 4.60316 4.72419 4.83288 4.89797 4.99797 5.04129 5.18876 5.32482 5.35114 5.41936 5.58404 6.03701 6.63965 6.97043 7.16694 7.61340 8.19220 8.72972 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.070341 B = 0.006690 C = 0.006467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.962987 B = 4184.568571 C = 4328.464944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.184 3.816 3 O -0.562 6.562 4 C -0.148 4.148 5 C 0.442 3.558 6 O -0.609 6.609 7 N -0.580 5.580 8 C -0.331 4.331 9 H 0.076 0.924 10 C -0.015 4.015 11 N -0.923 5.923 12 Si 0.991 3.009 13 H -0.275 1.275 14 H -0.271 1.271 15 H -0.271 1.271 16 C -0.188 4.188 17 C -0.171 4.171 18 C -0.168 4.168 19 H 0.058 0.942 20 H 0.054 0.946 21 H 0.074 0.926 22 H 0.375 0.625 23 H 0.101 0.899 24 H 0.106 0.894 25 H 0.394 0.606 26 H 0.276 0.724 27 H 0.124 0.876 28 H 0.112 0.888 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.329 -2.561 13.071 13.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.143 3.857 3 O -0.368 6.368 4 C -0.188 4.188 5 C 0.230 3.770 6 O -0.494 6.494 7 N -0.218 5.218 8 C -0.460 4.460 9 H 0.094 0.906 10 C -0.214 4.214 11 N -0.565 5.565 12 Si 0.815 3.185 13 H -0.200 1.200 14 H -0.196 1.196 15 H -0.196 1.196 16 C -0.206 4.206 17 C -0.207 4.207 18 C -0.205 4.205 19 H 0.077 0.923 20 H 0.073 0.927 21 H 0.093 0.907 22 H 0.223 0.777 23 H 0.119 0.881 24 H 0.124 0.876 25 H 0.228 0.772 26 H 0.086 0.914 27 H 0.142 0.858 28 H 0.130 0.870 29 H 0.114 0.886 30 H 0.100 0.900 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.288 -1.874 12.979 13.176 hybrid contribution 0.579 -0.178 -1.075 1.234 sum 1.867 -2.052 11.903 12.222 Atomic orbital electron populations 1.21887 0.93647 1.02111 1.02551 1.20280 0.94242 0.81021 0.90196 1.86668 1.26535 1.26850 1.96787 1.22249 1.02916 1.01128 0.92539 1.20836 0.84295 0.86680 0.85157 1.90482 1.42579 1.29623 1.86755 1.42019 1.46996 1.28053 1.04726 1.19691 1.30293 1.11014 0.85037 0.90558 1.26009 0.96841 0.97126 1.01456 1.69679 1.37299 1.23677 1.25844 0.84892 0.78180 0.78031 0.77356 1.19968 1.19603 1.19588 1.23009 1.05932 1.00156 0.91503 1.23055 0.92654 1.02241 1.02777 1.22905 0.98238 1.03004 0.96345 0.92304 0.92684 0.90750 0.77712 0.88051 0.87570 0.77209 0.91413 0.85792 0.86976 0.88614 0.89959 0.87202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.98 8.36 71.98 0.60 -4.37 16 2 C 0.18 5.75 0.79 -10.79 -0.01 5.74 16 3 O -0.56 -19.67 11.04 -131.53 -1.45 -21.13 16 4 C -0.15 -4.99 4.93 29.85 0.15 -4.84 16 5 C 0.44 21.16 7.34 87.66 0.64 21.81 16 6 O -0.61 -33.85 12.53 14.38 0.18 -33.67 16 7 N -0.58 -30.27 5.29 -306.99 -1.62 -31.89 16 8 C -0.33 -19.16 9.68 84.04 0.81 -18.34 16 9 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 10 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 11 N -0.92 -50.64 13.05 21.66 0.28 -50.36 16 12 Si 0.99 43.78 29.55 68.60 2.03 45.81 16 13 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 14 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 15 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 16 C -0.19 -4.23 5.15 -10.79 -0.06 -4.29 16 17 C -0.17 -3.24 9.74 30.59 0.30 -2.94 16 18 C -0.17 -3.42 9.67 30.60 0.30 -3.12 16 19 H 0.06 1.85 7.29 -2.39 -0.02 1.83 16 20 H 0.05 2.41 5.51 -2.39 -0.01 2.40 16 21 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 22 H 0.37 10.47 7.56 -74.06 -0.56 9.91 16 23 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 24 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 25 H 0.39 19.58 7.90 -92.71 -0.73 18.85 16 26 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 27 H 0.12 2.40 8.11 -2.39 -0.02 2.38 16 28 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.10 1.89 6.38 -2.39 -0.02 1.88 16 30 H 0.08 1.94 7.61 -2.39 -0.02 1.92 16 31 H 0.11 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -68.60 260.48 2.48 -66.13 By element: Atomic # 1 Polarization: 35.98 SS G_CDS: -0.14 Total: 35.84 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 3.20 Total: -10.72 kcal Atomic # 7 Polarization: -80.91 SS G_CDS: -1.34 Total: -82.25 kcal Atomic # 8 Polarization: -53.53 SS G_CDS: -1.27 Total: -54.80 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -68.60 2.48 -66.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388839588.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.139 kcal (2) G-P(sol) polarization free energy of solvation -68.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds