Wall clock time and date at job start Sun Mar 29 2020 22:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47009 * 2 1 4 4 H 1.09000 * 109.47368 * 304.99781 * 3 2 1 5 5 C 1.50705 * 109.46688 * 185.00015 * 3 2 1 6 6 H 1.08002 * 119.99802 * 239.99764 * 5 3 2 7 7 C 1.37879 * 120.00259 * 60.00582 * 5 3 2 8 8 N 1.31512 * 119.99508 * 359.97438 * 7 5 3 9 9 Si 1.86791 * 120.00239 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47217 * 59.99781 * 9 7 5 11 11 H 1.48497 * 109.47460 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47356 * 300.00097 * 9 7 5 13 13 N 1.46500 * 109.47162 * 65.00494 * 3 2 1 14 14 C 1.34779 * 119.99709 * 274.99879 * 13 3 2 15 15 O 1.21278 * 120.00165 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99756 * 179.97438 * 14 13 3 17 17 C 1.54037 * 113.81371 * 81.49168 * 16 14 13 18 18 O 1.44453 * 85.42226 * 91.80793 * 17 16 14 19 19 C 1.44175 * 93.38118 * 24.08939 * 18 17 16 20 20 H 1.08997 * 109.47109 * 299.99650 * 1 2 3 21 21 H 1.09004 * 109.47282 * 59.99777 * 1 2 3 22 22 H 1.08997 * 109.47453 * 179.97438 * 1 2 3 23 23 H 1.09010 * 109.46987 * 240.00654 * 2 1 3 24 24 H 1.08994 * 109.47581 * 120.00693 * 2 1 3 25 25 H 0.97001 * 119.99799 * 179.97438 * 8 7 5 26 26 H 0.97005 * 119.99857 * 94.99064 * 13 3 2 27 27 H 1.09002 * 113.00108 * 309.66663 * 16 14 13 28 28 H 1.08996 * 113.86647 * 205.91215 * 17 16 14 29 29 H 1.09000 * 113.86636 * 337.62164 * 17 16 14 30 30 H 1.09000 * 113.86303 * 221.77269 * 19 18 17 31 31 H 1.08998 * 113.98471 * 90.07076 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3368 -2.1729 9 14 6.0048 0.8812 -1.3819 10 1 6.5974 0.1471 -0.2350 11 1 6.3978 0.2167 -2.6504 12 1 6.4995 2.2814 -1.3821 13 7 1.6525 2.0975 1.2519 14 6 0.4351 2.6644 1.3670 15 8 -0.3396 2.6319 0.4346 16 6 0.0363 3.3376 2.6550 17 6 0.5744 4.7738 2.7986 18 8 -0.6740 5.1782 2.1948 19 6 -1.3621 3.9822 2.6128 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8898 25 1 3.8292 -0.0610 -2.9499 26 1 2.2720 2.1230 1.9978 27 1 0.2072 2.7137 3.5323 28 1 0.6904 5.0999 3.8321 29 1 1.4504 4.9801 2.1837 30 1 -2.0185 3.5619 1.8508 31 1 -1.8395 4.0640 3.5893 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388884177.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:02 Heat of formation + Delta-G solvation = -56.243392 kcal Electronic energy + Delta-G solvation = -14686.377843 eV Core-core repulsion = 12162.074264 eV Total energy + Delta-G solvation = -2524.303579 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.59558 -38.13428 -34.99649 -32.41691 -31.13739 -29.63648 -26.96575 -26.36801 -23.39201 -22.13135 -19.69210 -19.13250 -17.27102 -16.46653 -15.99438 -15.74680 -15.19059 -14.77200 -14.21568 -13.92823 -12.93144 -12.73187 -12.62878 -11.90847 -11.54105 -11.26722 -11.07472 -11.00422 -10.83780 -10.54622 -10.34373 -10.19449 -9.73688 -9.64666 -9.08033 -8.97837 -8.51081 -7.84680 -6.13397 -4.23167 3.19882 3.24538 3.30096 3.31035 3.72458 4.05897 4.35281 4.44283 5.17120 5.18722 5.24066 5.25080 5.52160 5.72375 5.98691 6.06826 6.23073 6.37430 6.43652 6.64225 7.01784 7.18095 7.34935 7.43297 7.60141 7.71503 7.88615 8.16631 8.64189 8.75923 9.10996 9.44174 10.91917 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.041655 B = 0.008548 C = 0.007525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.034877 B = 3274.838706 C = 3719.990995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.705 5.705 14 C 0.519 3.481 15 O -0.539 6.539 16 C -0.190 4.190 17 C 0.050 3.950 18 O -0.377 6.377 19 C 0.055 3.945 20 H 0.037 0.963 21 H 0.050 0.950 22 H 0.023 0.977 23 H 0.099 0.901 24 H 0.031 0.969 25 H 0.265 0.735 26 H 0.388 0.612 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.604 3.332 10.328 11.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.353 5.353 14 C 0.303 3.697 15 O -0.417 6.417 16 C -0.211 4.211 17 C -0.028 4.028 18 O -0.295 6.295 19 C -0.022 4.022 20 H 0.056 0.944 21 H 0.069 0.931 22 H 0.042 0.958 23 H 0.118 0.882 24 H 0.050 0.950 25 H 0.075 0.925 26 H 0.220 0.780 27 H 0.116 0.884 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.122 0.878 31 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.205 3.417 9.278 10.744 hybrid contribution 1.421 -0.268 0.459 1.517 sum -2.784 3.149 9.737 10.606 Atomic orbital electron populations 1.21842 0.98387 0.98053 1.01201 1.21935 0.92587 0.99796 1.02304 1.18805 0.94231 0.89181 0.80954 0.93288 1.21188 0.90668 1.39184 1.06341 0.92147 1.24889 0.98631 0.94790 0.95373 1.69883 1.35241 1.37469 1.09320 0.86508 0.84816 0.78312 0.77459 1.20184 1.21104 1.20184 1.46451 1.14426 1.55781 1.18607 1.19551 0.83075 0.79180 0.87889 1.90672 1.51521 1.59559 1.39931 1.24338 0.98603 0.98810 0.99386 1.23873 0.89914 0.90068 0.98896 1.89759 1.23323 1.42168 1.74278 1.23796 0.94360 0.83391 1.00633 0.94391 0.93117 0.95807 0.88243 0.95039 0.92475 0.77984 0.88376 0.89576 0.88660 0.87813 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 8.51 37.16 0.32 -2.75 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.75 2.24 -69.08 -0.15 6.60 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 5 C -0.54 -14.02 8.73 -34.44 -0.30 -14.32 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.65 11.29 55.43 0.63 -24.02 16 9 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 13 N -0.71 -14.36 5.02 -54.93 -0.28 -14.64 16 14 C 0.52 10.19 5.88 -10.98 -0.06 10.13 16 15 O -0.54 -12.66 13.02 5.56 0.07 -12.58 16 16 C -0.19 -2.71 4.43 -90.69 -0.40 -3.11 16 17 C 0.05 0.66 8.79 37.64 0.33 0.99 16 18 O -0.38 -6.20 12.41 -35.23 -0.44 -6.64 16 19 C 0.06 0.77 8.60 37.64 0.32 1.09 16 20 H 0.04 0.81 5.64 -51.93 -0.29 0.52 16 21 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.10 2.66 5.95 -51.92 -0.31 2.36 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.39 6.78 8.54 -40.82 -0.35 6.43 16 27 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.10 1.31 8.09 -51.93 -0.42 0.89 16 30 H 0.10 1.59 7.37 -51.93 -0.38 1.21 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 258.29 15.07 3.89 3.89 Total: -1.00 -30.66 258.29 -5.54 -36.21 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -4.21 Total: 5.23 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -0.19 Total: -2.91 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.35 Total: -38.66 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.36 Total: -19.22 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -30.66 -5.54 -36.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388884177.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.037 kcal (2) G-P(sol) polarization free energy of solvation -30.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds