Wall clock time and date at job start Sun Mar 29 2020 22:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47009 * 2 1 4 4 H 1.09000 * 109.47368 * 304.99781 * 3 2 1 5 5 C 1.50705 * 109.46688 * 185.00015 * 3 2 1 6 6 H 1.08002 * 119.99802 * 239.99764 * 5 3 2 7 7 C 1.37879 * 120.00259 * 60.00582 * 5 3 2 8 8 N 1.31512 * 119.99508 * 359.97438 * 7 5 3 9 9 Si 1.86791 * 120.00239 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47217 * 59.99781 * 9 7 5 11 11 H 1.48497 * 109.47460 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47356 * 300.00097 * 9 7 5 13 13 N 1.46500 * 109.47162 * 65.00494 * 3 2 1 14 14 C 1.34779 * 119.99709 * 274.99879 * 13 3 2 15 15 O 1.21278 * 120.00165 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99756 * 179.97438 * 14 13 3 17 17 C 1.54037 * 113.81371 * 81.49168 * 16 14 13 18 18 O 1.44453 * 85.42226 * 91.80793 * 17 16 14 19 19 C 1.44175 * 93.38118 * 24.08939 * 18 17 16 20 20 H 1.08997 * 109.47109 * 299.99650 * 1 2 3 21 21 H 1.09004 * 109.47282 * 59.99777 * 1 2 3 22 22 H 1.08997 * 109.47453 * 179.97438 * 1 2 3 23 23 H 1.09010 * 109.46987 * 240.00654 * 2 1 3 24 24 H 1.08994 * 109.47581 * 120.00693 * 2 1 3 25 25 H 0.97001 * 119.99799 * 179.97438 * 8 7 5 26 26 H 0.97005 * 119.99857 * 94.99064 * 13 3 2 27 27 H 1.09002 * 113.00108 * 309.66663 * 16 14 13 28 28 H 1.08996 * 113.86647 * 205.91215 * 17 16 14 29 29 H 1.09000 * 113.86636 * 337.62164 * 17 16 14 30 30 H 1.09000 * 113.86303 * 221.77269 * 19 18 17 31 31 H 1.08998 * 113.98471 * 90.07076 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3368 -2.1729 9 14 6.0048 0.8812 -1.3819 10 1 6.5974 0.1471 -0.2350 11 1 6.3978 0.2167 -2.6504 12 1 6.4995 2.2814 -1.3821 13 7 1.6525 2.0975 1.2519 14 6 0.4351 2.6644 1.3670 15 8 -0.3396 2.6319 0.4346 16 6 0.0363 3.3376 2.6550 17 6 0.5744 4.7738 2.7986 18 8 -0.6740 5.1782 2.1948 19 6 -1.3621 3.9822 2.6128 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8898 25 1 3.8292 -0.0610 -2.9499 26 1 2.2720 2.1230 1.9978 27 1 0.2072 2.7137 3.5323 28 1 0.6904 5.0999 3.8321 29 1 1.4504 4.9801 2.1837 30 1 -2.0185 3.5619 1.8508 31 1 -1.8395 4.0640 3.5893 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388884177.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:02 Heat of formation + Delta-G solvation = -79.324055 kcal Electronic energy + Delta-G solvation = -14687.378695 eV Core-core repulsion = 12162.074264 eV Total energy + Delta-G solvation = -2525.304431 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.85317 -39.68163 -36.85875 -34.31856 -32.94791 -30.96711 -28.86557 -27.41451 -25.24415 -23.67368 -21.51519 -20.69856 -18.79638 -17.85526 -17.44184 -17.27948 -16.66495 -16.31572 -15.87887 -15.57395 -14.62651 -14.48868 -13.96807 -13.52972 -13.31451 -13.16838 -12.91407 -12.66127 -12.20477 -12.19397 -12.07770 -11.65675 -11.54052 -11.08262 -10.96414 -10.57508 -10.44760 -9.64414 -8.16442 -6.34238 1.44628 1.46490 1.54262 1.73730 2.32305 2.51799 2.82625 3.12660 3.29322 3.91806 4.21938 4.38287 4.39639 4.47911 4.56193 4.66572 4.74709 4.92303 5.00609 5.07179 5.21801 5.25173 5.42695 5.55412 5.61909 5.78758 5.92138 6.16397 6.73910 6.97901 7.33079 7.58258 8.88748 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.041655 B = 0.008548 C = 0.007525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.034877 B = 3274.838706 C = 3719.990995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.007 1.007 5 C -0.549 4.549 6 H 0.073 0.927 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.971 3.029 10 H -0.263 1.263 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.701 5.701 14 C 0.511 3.489 15 O -0.585 6.585 16 C -0.184 4.184 17 C 0.057 3.943 18 O -0.417 6.417 19 C 0.058 3.942 20 H 0.045 0.955 21 H 0.022 0.978 22 H 0.047 0.953 23 H 0.071 0.929 24 H 0.043 0.957 25 H 0.265 0.735 26 H 0.405 0.595 27 H 0.142 0.858 28 H 0.136 0.864 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.804 3.582 13.040 13.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.173 3.827 4 H 0.011 0.989 5 C -0.587 4.587 6 H 0.091 0.909 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.796 3.204 10 H -0.187 1.187 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.350 5.350 14 C 0.298 3.702 15 O -0.466 6.466 16 C -0.205 4.205 17 C -0.019 4.019 18 O -0.336 6.336 19 C -0.019 4.019 20 H 0.064 0.936 21 H 0.041 0.959 22 H 0.066 0.934 23 H 0.089 0.911 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.240 0.760 27 H 0.159 0.841 28 H 0.153 0.847 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.397 3.678 12.039 13.039 hybrid contribution 1.123 -0.314 -0.396 1.232 sum -2.273 3.364 11.643 12.331 Atomic orbital electron populations 1.21682 0.97025 0.99194 1.00201 1.21777 0.93714 0.99064 1.01388 1.18373 0.93697 0.89230 0.81376 0.98882 1.21559 0.91371 1.38994 1.06781 0.90873 1.25797 1.03403 0.94389 0.95031 1.70048 1.37186 1.38309 1.09855 0.85417 0.79011 0.78425 0.77596 1.18750 1.21281 1.19720 1.46204 1.15435 1.55760 1.17581 1.20540 0.81955 0.78268 0.89472 1.90657 1.52701 1.61015 1.42261 1.24254 0.99241 0.99796 0.97211 1.24134 0.88317 0.88486 1.01004 1.89733 1.25032 1.43345 1.75539 1.23999 0.93726 0.82075 1.02053 0.93601 0.95874 0.93433 0.91100 0.93778 0.92611 0.75999 0.84052 0.84673 0.90054 0.90400 0.85232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 8.51 71.98 0.61 -4.96 16 2 C -0.12 -5.92 5.45 30.59 0.17 -5.75 16 3 C 0.28 14.18 2.24 44.25 0.10 14.28 16 4 H -0.01 -0.42 7.58 -2.39 -0.02 -0.43 16 5 C -0.55 -28.83 8.73 25.60 0.22 -28.61 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 7 C 0.01 0.75 5.29 84.66 0.45 1.19 16 8 N -0.92 -52.60 11.29 21.45 0.24 -52.36 16 9 Si 0.97 41.83 29.54 68.60 2.03 43.86 16 10 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 11 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 13 N -0.70 -28.22 5.02 -446.09 -2.24 -30.46 16 14 C 0.51 19.83 5.88 87.66 0.52 20.34 16 15 O -0.59 -28.33 13.02 -3.02 -0.04 -28.37 16 16 C -0.18 -4.71 4.43 -10.84 -0.05 -4.75 16 17 C 0.06 1.32 8.79 72.30 0.64 1.96 16 18 O -0.42 -13.01 12.41 -148.98 -1.85 -14.86 16 19 C 0.06 1.46 8.60 72.30 0.62 2.08 16 20 H 0.04 1.96 5.64 -2.39 -0.01 1.95 16 21 H 0.02 1.13 7.85 -2.39 -0.02 1.11 16 22 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.07 3.92 5.95 -2.38 -0.01 3.90 16 24 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 26 H 0.40 13.41 8.54 -92.70 -0.79 12.62 16 27 H 0.14 2.44 8.14 -2.39 -0.02 2.43 16 28 H 0.14 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.08 2.08 8.09 -2.39 -0.02 2.06 16 30 H 0.08 2.36 7.37 -2.39 -0.02 2.34 16 31 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -69.65 258.29 1.75 -67.90 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.34 Total: 18.51 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 3.27 Total: -4.21 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -2.00 Total: -82.82 kcal Atomic # 8 Polarization: -41.34 SS G_CDS: -1.89 Total: -43.23 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -69.65 1.75 -67.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388884177.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.428 kcal (2) G-P(sol) polarization free energy of solvation -69.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds