Wall clock time and date at job start Sun Mar 29 2020 21:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46907 * 109.46903 * 2 1 4 4 C 1.47887 * 111.01481 * 69.12508 * 3 2 1 5 5 C 1.54908 * 104.77420 * 146.33028 * 4 3 2 6 6 C 1.55138 * 101.68619 * 322.97931 * 5 4 3 7 7 H 1.09003 * 110.70516 * 277.25131 * 6 5 4 8 8 N 1.46903 * 110.70723 * 154.02336 * 6 5 4 9 9 C 1.46896 * 111.00344 * 86.44948 * 8 6 5 10 10 C 1.53001 * 109.46871 * 180.02562 * 9 8 6 11 11 C 1.50705 * 109.46491 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00688 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99296 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00515 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99779 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46797 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47283 * 119.99279 * 15 13 11 18 18 H 1.48494 * 109.47131 * 239.99923 * 15 13 11 19 19 C 1.47444 * 110.99660 * 190.00196 * 3 2 1 20 20 H 1.09001 * 109.47404 * 300.00262 * 1 2 3 21 21 H 1.09000 * 109.47110 * 59.99847 * 1 2 3 22 22 H 1.09003 * 109.47241 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47195 * 240.00445 * 2 1 3 24 24 H 1.08994 * 109.47178 * 119.99726 * 2 1 3 25 25 H 1.08993 * 110.35657 * 27.51601 * 4 3 2 26 26 H 1.09005 * 110.40536 * 265.16436 * 4 3 2 27 27 H 1.09002 * 110.99023 * 204.86730 * 5 4 3 28 28 H 1.08995 * 110.99233 * 81.08878 * 5 4 3 29 29 H 1.00905 * 110.99850 * 210.40855 * 8 6 5 30 30 H 1.09000 * 109.46847 * 300.00427 * 9 8 6 31 31 H 1.09001 * 109.47082 * 60.00291 * 9 8 6 32 32 H 1.08999 * 109.46798 * 299.99742 * 10 9 8 33 33 H 1.08992 * 109.47076 * 59.99990 * 10 9 8 34 34 H 0.96998 * 120.00651 * 180.02562 * 14 13 11 35 35 H 1.08998 * 109.89066 * 117.34098 * 19 3 2 36 36 H 1.08993 * 110.02675 * 356.21988 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7326 2.0490 1.2899 5 6 2.9255 3.0118 1.5127 6 6 4.1091 2.1809 0.9509 7 1 4.4751 1.4773 1.6986 8 7 5.1909 3.0624 0.4918 9 6 6.0958 3.4049 1.5970 10 6 7.2063 4.3224 1.0813 11 6 8.1350 4.6732 2.2151 12 1 7.9514 4.2815 3.2046 13 6 9.2186 5.4954 1.9893 14 7 9.4420 5.9729 0.7845 15 14 10.3703 5.9297 3.3945 16 1 9.9028 5.2693 4.6397 17 1 11.7428 5.4637 3.0718 18 1 10.3803 7.4018 3.5892 19 6 3.4738 1.4313 -0.2391 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8901 24 1 1.8933 -0.5138 0.8900 25 1 1.6837 1.3132 2.0925 26 1 0.7992 2.6088 1.2298 27 1 3.0647 3.2223 2.5731 28 1 2.7934 3.9345 0.9477 29 1 5.6975 2.6443 -0.2741 30 1 5.5359 3.9171 2.3796 31 1 6.5358 2.4936 2.0021 32 1 7.7662 3.8106 0.2986 33 1 6.7660 5.2336 0.6765 34 1 10.2046 6.5510 0.6255 35 1 3.6803 1.9654 -1.1665 36 1 3.8750 0.4196 -0.2967 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389306732.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:36 Heat of formation + Delta-G solvation = -8.798858 kcal Electronic energy + Delta-G solvation = -14035.768635 eV Core-core repulsion = 11747.074162 eV Total energy + Delta-G solvation = -2288.694473 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.17648 -35.64990 -33.26834 -32.02337 -29.46271 -29.15012 -26.66599 -23.78007 -23.05164 -20.85196 -20.30695 -20.25458 -16.41849 -15.96669 -15.67401 -14.90011 -14.86678 -14.38280 -13.61776 -13.52357 -13.07865 -12.73433 -12.56301 -12.25654 -11.72022 -11.55390 -11.29827 -11.23863 -11.03717 -10.97482 -10.73194 -10.63448 -10.49515 -9.97175 -9.37887 -9.12819 -8.35587 -8.34897 -7.84902 -5.99461 -4.02094 3.31302 3.38588 3.42579 3.89777 4.43210 4.65732 4.66628 4.88540 5.02833 5.12293 5.32164 5.32907 5.36053 5.36500 5.57000 5.61662 5.76127 5.79720 5.93942 6.00605 6.07458 6.13667 6.32401 6.34660 6.50159 6.92808 6.98559 7.04545 7.50095 7.72996 7.83167 7.95723 8.08793 8.43850 9.05369 9.61719 11.11998 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.088648 B = 0.004694 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 315.781931 B = 5963.653292 C = 6083.401676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.044 3.956 3 N -0.527 5.527 4 C 0.043 3.957 5 C -0.118 4.118 6 C 0.065 3.935 7 H 0.042 0.958 8 N -0.679 5.679 9 C 0.067 3.933 10 C 0.025 3.975 11 C -0.521 4.521 12 H 0.054 0.946 13 C 0.057 3.943 14 N -0.893 5.893 15 Si 0.892 3.108 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.283 1.283 19 C 0.042 3.958 20 H 0.053 0.947 21 H 0.062 0.938 22 H 0.055 0.945 23 H 0.071 0.929 24 H 0.031 0.969 25 H 0.042 0.958 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.337 0.663 30 H 0.058 0.942 31 H 0.014 0.986 32 H 0.014 0.986 33 H 0.026 0.974 34 H 0.260 0.740 35 H 0.088 0.912 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.745 -10.722 -0.528 18.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 N -0.252 5.252 4 C -0.085 4.085 5 C -0.156 4.156 6 C -0.047 4.047 7 H 0.060 0.940 8 N -0.310 5.310 9 C -0.061 4.061 10 C -0.013 4.013 11 C -0.560 4.560 12 H 0.072 0.928 13 C -0.144 4.144 14 N -0.532 5.532 15 Si 0.720 3.280 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.086 4.086 20 H 0.072 0.928 21 H 0.081 0.919 22 H 0.074 0.926 23 H 0.090 0.910 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.155 0.845 30 H 0.076 0.924 31 H 0.032 0.968 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -15.258 -9.796 -0.964 18.157 hybrid contribution 1.653 -1.038 1.528 2.478 sum -13.605 -10.834 0.564 17.401 Atomic orbital electron populations 1.21748 0.94916 1.01218 1.02505 1.22293 0.96239 0.89380 1.00496 1.63604 1.13783 1.15570 1.32224 1.23070 0.99364 0.96583 0.89496 1.22741 0.92784 0.99066 1.01052 1.22717 0.93261 0.93190 0.95499 0.94009 1.60653 1.14278 1.44878 1.11194 1.22192 0.93722 0.98033 0.92197 1.19077 0.91300 0.94576 0.96330 1.21214 1.09840 1.29430 0.95532 0.92755 1.25007 0.97790 0.95992 0.95594 1.69979 1.29119 1.33689 1.20422 0.86534 0.80736 0.78201 0.82508 1.19792 1.21027 1.20949 1.22967 0.86861 0.99190 0.99569 0.92795 0.91853 0.92582 0.91012 0.95028 0.93980 0.90344 0.91316 0.89514 0.84481 0.92362 0.96797 0.96803 0.95566 0.93030 0.89423 0.93178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.96 37.16 0.37 -0.90 16 2 C 0.04 0.45 5.29 -3.82 -0.02 0.43 16 3 N -0.53 -6.52 5.16 -231.21 -1.19 -7.72 16 4 C 0.04 0.51 5.79 -2.27 -0.01 0.50 16 5 C -0.12 -1.66 6.70 -24.59 -0.16 -1.82 16 6 C 0.06 0.98 3.23 -65.89 -0.21 0.76 16 7 H 0.04 0.65 7.90 -51.93 -0.41 0.24 16 8 N -0.68 -12.29 6.30 -104.80 -0.66 -12.95 16 9 C 0.07 1.43 5.48 -3.83 -0.02 1.41 16 10 C 0.02 0.65 5.23 -27.88 -0.15 0.50 16 11 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 12 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -27.13 13.29 55.43 0.74 -26.39 16 15 Si 0.89 21.81 29.54 -169.99 -5.02 16.78 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 C 0.04 0.56 6.38 -2.83 -0.02 0.54 16 20 H 0.05 0.47 7.49 -51.93 -0.39 0.08 16 21 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.07 0.69 8.03 -51.93 -0.42 0.27 16 24 H 0.03 0.32 7.85 -51.93 -0.41 -0.09 16 25 H 0.04 0.47 7.62 -51.93 -0.40 0.08 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 29 H 0.34 5.85 8.45 -39.29 -0.33 5.52 16 30 H 0.06 1.26 8.13 -51.93 -0.42 0.83 16 31 H 0.01 0.29 8.09 -51.93 -0.42 -0.13 16 32 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 35 H 0.09 1.21 7.97 -51.93 -0.41 0.80 16 36 H 0.05 0.60 7.56 -51.93 -0.39 0.21 16 LS Contribution 290.38 15.07 4.38 4.38 Total: -1.00 -30.02 290.38 -8.90 -38.92 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -6.50 Total: -0.74 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -0.64 Total: -12.28 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -1.12 Total: -47.06 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.02 -8.90 -38.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389306732.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.119 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds