Wall clock time and date at job start Sun Mar 29 2020 21:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46907 * 109.46903 * 2 1 4 4 C 1.47887 * 111.01481 * 69.12508 * 3 2 1 5 5 C 1.54908 * 104.77420 * 146.33028 * 4 3 2 6 6 C 1.55138 * 101.68619 * 322.97931 * 5 4 3 7 7 H 1.09003 * 110.70516 * 277.25131 * 6 5 4 8 8 N 1.46903 * 110.70723 * 154.02336 * 6 5 4 9 9 C 1.46896 * 111.00344 * 86.44948 * 8 6 5 10 10 C 1.53001 * 109.46871 * 180.02562 * 9 8 6 11 11 C 1.50705 * 109.46491 * 180.02562 * 10 9 8 12 12 H 1.07997 * 120.00688 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99296 * 180.02562 * 11 10 9 14 14 N 1.31510 * 120.00515 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99779 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46797 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47283 * 119.99279 * 15 13 11 18 18 H 1.48494 * 109.47131 * 239.99923 * 15 13 11 19 19 C 1.47444 * 110.99660 * 190.00196 * 3 2 1 20 20 H 1.09001 * 109.47404 * 300.00262 * 1 2 3 21 21 H 1.09000 * 109.47110 * 59.99847 * 1 2 3 22 22 H 1.09003 * 109.47241 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47195 * 240.00445 * 2 1 3 24 24 H 1.08994 * 109.47178 * 119.99726 * 2 1 3 25 25 H 1.08993 * 110.35657 * 27.51601 * 4 3 2 26 26 H 1.09005 * 110.40536 * 265.16436 * 4 3 2 27 27 H 1.09002 * 110.99023 * 204.86730 * 5 4 3 28 28 H 1.08995 * 110.99233 * 81.08878 * 5 4 3 29 29 H 1.00905 * 110.99850 * 210.40855 * 8 6 5 30 30 H 1.09000 * 109.46847 * 300.00427 * 9 8 6 31 31 H 1.09001 * 109.47082 * 60.00291 * 9 8 6 32 32 H 1.08999 * 109.46798 * 299.99742 * 10 9 8 33 33 H 1.08992 * 109.47076 * 59.99990 * 10 9 8 34 34 H 0.96998 * 120.00651 * 180.02562 * 14 13 11 35 35 H 1.08998 * 109.89066 * 117.34098 * 19 3 2 36 36 H 1.08993 * 110.02675 * 356.21988 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7326 2.0490 1.2899 5 6 2.9255 3.0118 1.5127 6 6 4.1091 2.1809 0.9509 7 1 4.4751 1.4773 1.6986 8 7 5.1909 3.0624 0.4918 9 6 6.0958 3.4049 1.5970 10 6 7.2063 4.3224 1.0813 11 6 8.1350 4.6732 2.2151 12 1 7.9514 4.2815 3.2046 13 6 9.2186 5.4954 1.9893 14 7 9.4420 5.9729 0.7845 15 14 10.3703 5.9297 3.3945 16 1 9.9028 5.2693 4.6397 17 1 11.7428 5.4637 3.0718 18 1 10.3803 7.4018 3.5892 19 6 3.4738 1.4313 -0.2391 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8901 24 1 1.8933 -0.5138 0.8900 25 1 1.6837 1.3132 2.0925 26 1 0.7992 2.6088 1.2298 27 1 3.0647 3.2223 2.5731 28 1 2.7934 3.9345 0.9477 29 1 5.6975 2.6443 -0.2741 30 1 5.5359 3.9171 2.3796 31 1 6.5358 2.4936 2.0021 32 1 7.7662 3.8106 0.2986 33 1 6.7660 5.2336 0.6765 34 1 10.2046 6.5510 0.6255 35 1 3.6803 1.9654 -1.1665 36 1 3.8750 0.4196 -0.2967 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389306732.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:36 Heat of formation + Delta-G solvation = -29.938555 kcal Electronic energy + Delta-G solvation = -14036.685321 eV Core-core repulsion = 11747.074162 eV Total energy + Delta-G solvation = -2289.611159 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.24529 -37.12889 -35.12209 -33.39921 -31.10757 -30.15637 -28.10177 -25.68573 -23.94445 -22.48322 -21.50711 -21.47326 -18.53953 -17.00262 -16.97704 -16.53406 -16.21480 -15.72059 -14.98414 -14.85211 -14.37981 -14.06729 -13.96281 -13.51170 -13.26120 -12.89644 -12.74343 -12.47442 -12.34129 -12.26822 -12.22707 -11.92702 -11.74594 -11.65354 -11.39885 -11.21723 -10.58103 -9.35412 -9.28886 -8.21304 -6.33086 1.39952 1.40621 1.53851 2.39758 2.93503 3.12115 3.32537 3.59082 3.85976 4.11099 4.22157 4.32221 4.36452 4.43897 4.53639 4.58892 4.63253 4.69022 4.89830 4.94746 4.98515 5.01797 5.04713 5.12613 5.25553 5.37116 5.44684 5.65586 5.77959 5.96618 6.11145 6.16607 6.27470 6.50859 6.84209 7.36349 8.91093 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.088648 B = 0.004694 C = 0.004602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 315.781931 B = 5963.653292 C = 6083.401676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.041 3.959 3 N -0.538 5.538 4 C 0.051 3.949 5 C -0.119 4.119 6 C 0.063 3.937 7 H 0.043 0.957 8 N -0.684 5.684 9 C 0.087 3.913 10 C 0.031 3.969 11 C -0.545 4.545 12 H 0.060 0.940 13 C 0.000 4.000 14 N -0.931 5.931 15 Si 0.968 3.032 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.277 1.277 19 C 0.049 3.951 20 H 0.053 0.947 21 H 0.057 0.943 22 H 0.072 0.928 23 H 0.077 0.923 24 H 0.035 0.965 25 H 0.054 0.946 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.340 0.660 30 H 0.056 0.944 31 H 0.017 0.983 32 H -0.008 1.008 33 H -0.006 1.006 34 H 0.264 0.736 35 H 0.078 0.922 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.385 -11.771 0.582 19.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.086 4.086 3 N -0.263 5.263 4 C -0.077 4.077 5 C -0.157 4.157 6 C -0.048 4.048 7 H 0.061 0.939 8 N -0.316 5.316 9 C -0.042 4.042 10 C -0.006 4.006 11 C -0.583 4.583 12 H 0.078 0.922 13 C -0.198 4.198 14 N -0.571 5.571 15 Si 0.792 3.208 16 H -0.186 1.186 17 H -0.202 1.202 18 H -0.203 1.203 19 C -0.079 4.079 20 H 0.072 0.928 21 H 0.076 0.924 22 H 0.091 0.909 23 H 0.095 0.905 24 H 0.053 0.947 25 H 0.072 0.928 26 H 0.107 0.893 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.159 0.841 30 H 0.075 0.925 31 H 0.035 0.965 32 H 0.011 0.989 33 H 0.013 0.987 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.922 -10.862 0.145 19.275 hybrid contribution 1.811 -0.723 1.128 2.253 sum -14.111 -11.585 1.273 18.302 Atomic orbital electron populations 1.21720 0.93686 1.02295 1.02245 1.22392 0.97236 0.88079 1.00935 1.63626 1.12946 1.17166 1.32527 1.23030 0.98620 0.96322 0.89723 1.22719 0.93465 0.98795 1.00751 1.22800 0.92405 0.93091 0.96532 0.93870 1.60560 1.14215 1.46517 1.10308 1.21784 0.92687 0.96967 0.92755 1.18928 0.92344 0.94006 0.95355 1.21633 1.10623 1.29825 0.96260 0.92208 1.25989 0.99621 0.95697 0.98465 1.70110 1.29959 1.34304 1.22771 0.85355 0.78242 0.78060 0.79104 1.18584 1.20241 1.20308 1.22853 0.87524 0.99416 0.98094 0.92763 0.92378 0.90880 0.90473 0.94671 0.92785 0.89341 0.91190 0.91225 0.84118 0.92534 0.96451 0.98932 0.98714 0.92693 0.90377 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.96 71.98 0.72 -1.39 16 2 C 0.04 0.75 5.29 86.30 0.46 1.20 16 3 N -0.54 -12.31 5.16 -885.42 -4.57 -16.88 16 4 C 0.05 1.11 5.79 86.77 0.50 1.61 16 5 C -0.12 -3.23 6.70 31.98 0.21 -3.02 16 6 C 0.06 1.83 3.23 46.10 0.15 1.98 16 7 H 0.04 1.28 7.90 -2.39 -0.02 1.26 16 8 N -0.68 -24.86 6.30 -485.49 -3.06 -27.92 16 9 C 0.09 3.74 5.48 86.30 0.47 4.22 16 10 C 0.03 1.69 5.23 29.85 0.16 1.85 16 11 C -0.54 -31.56 9.11 25.60 0.23 -31.33 16 12 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 13 C 0.00 0.02 5.46 84.66 0.46 0.48 16 14 N -0.93 -57.42 13.29 21.45 0.28 -57.14 16 15 Si 0.97 44.58 29.54 68.60 2.03 46.60 16 16 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 19 C 0.05 1.23 6.38 86.65 0.55 1.79 16 20 H 0.05 0.80 7.49 -2.39 -0.02 0.78 16 21 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 22 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.08 1.31 8.03 -2.38 -0.02 1.29 16 24 H 0.04 0.62 7.85 -2.39 -0.02 0.60 16 25 H 0.05 1.07 7.62 -2.39 -0.02 1.05 16 26 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.34 11.92 8.45 -89.69 -0.76 11.16 16 30 H 0.06 2.44 8.13 -2.39 -0.02 2.42 16 31 H 0.02 0.73 8.09 -2.39 -0.02 0.71 16 32 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 33 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 34 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 35 H 0.08 2.10 7.97 -2.39 -0.02 2.08 16 36 H 0.06 1.41 7.56 -2.39 -0.02 1.39 16 Total: -1.00 -63.87 290.38 -1.14 -65.01 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.27 Total: 12.93 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: 3.92 Total: -22.61 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -7.34 Total: -101.94 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -63.87 -1.14 -65.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389306732.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.070 kcal (2) G-P(sol) polarization free energy of solvation -63.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds