Wall clock time and date at job start Sun Mar 29 2020 21:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46897 * 109.47395 * 2 1 4 4 C 1.48538 * 111.00123 * 307.40108 * 3 2 1 5 5 C 1.54933 * 103.22579 * 200.28130 * 4 3 2 6 6 C 1.54593 * 102.92591 * 37.41127 * 5 4 3 7 7 H 1.08998 * 110.30989 * 96.95784 * 6 5 4 8 8 N 1.46897 * 110.31124 * 219.12802 * 6 5 4 9 9 C 1.46896 * 111.00347 * 270.71771 * 8 6 5 10 10 C 1.53000 * 109.47769 * 179.97438 * 9 8 6 11 11 C 1.50693 * 109.47240 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00482 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99717 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00543 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99945 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46935 * 89.99977 * 15 13 11 17 17 H 1.48503 * 109.47249 * 209.99949 * 15 13 11 18 18 H 1.48494 * 109.47378 * 330.00198 * 15 13 11 19 19 C 1.47899 * 111.00068 * 190.00265 * 3 2 1 20 20 H 1.09000 * 109.47068 * 59.99554 * 1 2 3 21 21 H 1.08997 * 109.47471 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46673 * 300.00106 * 1 2 3 23 23 H 1.09002 * 109.46752 * 240.00442 * 2 1 3 24 24 H 1.09000 * 109.47068 * 120.00446 * 2 1 3 25 25 H 1.09007 * 110.66246 * 318.71191 * 4 3 2 26 26 H 1.08993 * 110.66671 * 81.67342 * 4 3 2 27 27 H 1.09007 * 110.72333 * 279.05054 * 5 4 3 28 28 H 1.09004 * 110.72411 * 155.77248 * 5 4 3 29 29 H 1.00907 * 110.99841 * 34.66759 * 8 6 5 30 30 H 1.09003 * 109.47059 * 300.00154 * 9 8 6 31 31 H 1.09005 * 109.47160 * 59.99764 * 9 8 6 32 32 H 1.08996 * 109.46747 * 300.00149 * 10 9 8 33 33 H 1.09005 * 109.46860 * 59.99718 * 10 9 8 34 34 H 0.97000 * 120.00626 * 180.02562 * 14 13 11 35 35 H 1.09004 * 109.91646 * 26.49394 * 19 3 2 36 36 H 1.09001 * 110.08341 * 265.29071 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.4031 2.1676 -1.1016 5 6 2.3782 3.3585 -1.2793 6 6 3.7624 2.7090 -1.0513 7 1 4.2236 2.4561 -2.0060 8 7 4.6313 3.6150 -0.2882 9 6 5.3821 4.5038 -1.1849 10 6 6.2732 5.4307 -0.3557 11 6 7.0439 6.3420 -1.2757 12 1 6.9118 6.2673 -2.3450 13 6 7.9178 7.2712 -0.7524 14 7 8.0792 7.3620 0.5497 15 14 8.8737 8.4005 -1.8928 16 1 8.0908 9.6393 -2.1331 17 1 10.1742 8.7503 -1.2671 18 1 9.1159 7.7096 -3.1847 19 6 3.4784 1.4313 -0.2398 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 1.3517 1.5731 -2.0139 26 1 0.4114 2.5183 -0.8161 27 1 2.1860 4.1291 -0.5326 28 1 2.3060 3.7692 -2.2864 29 1 4.0984 4.1460 0.3842 30 1 6.0016 3.9062 -1.8537 31 1 4.6846 5.1009 -1.7724 32 1 5.6534 6.0282 0.3127 33 1 6.9708 4.8340 0.2321 34 1 8.6937 8.0159 0.9179 35 1 3.7895 0.5542 -0.8074 36 1 4.0129 1.4679 0.7095 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389306734.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:39 Heat of formation + Delta-G solvation = -7.438159 kcal Electronic energy + Delta-G solvation = -14060.822898 eV Core-core repulsion = 11772.187430 eV Total energy + Delta-G solvation = -2288.635468 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.21268 -35.69485 -33.29297 -31.93609 -29.27618 -29.25828 -26.59213 -23.74815 -23.17018 -20.69881 -20.54623 -20.14817 -16.39500 -16.09552 -15.72800 -14.88624 -14.57220 -14.29081 -14.04455 -13.28649 -12.81719 -12.75238 -12.48045 -12.17439 -11.82484 -11.58287 -11.32808 -11.17312 -11.07370 -11.03798 -10.91655 -10.61727 -10.48660 -9.98599 -9.34050 -9.12118 -8.41552 -8.33478 -7.75220 -5.97741 -4.00397 3.33144 3.39283 3.42640 3.97173 4.44303 4.62513 4.74559 4.86655 5.03029 5.08759 5.24452 5.34265 5.38012 5.41203 5.54522 5.64437 5.72289 5.81129 5.90675 5.95580 6.02519 6.16715 6.22159 6.36833 6.47875 6.88587 7.00361 7.03972 7.54043 7.76473 7.85878 8.00016 8.11633 8.45861 9.06975 9.63252 11.13688 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.089989 B = 0.004720 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 311.074069 B = 5931.058710 C = 6045.025702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.042 3.958 3 N -0.518 5.518 4 C 0.038 3.962 5 C -0.153 4.153 6 C 0.079 3.921 7 H 0.077 0.923 8 N -0.682 5.682 9 C 0.066 3.934 10 C 0.025 3.975 11 C -0.522 4.522 12 H 0.054 0.946 13 C 0.058 3.942 14 N -0.893 5.893 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.043 3.957 20 H 0.054 0.946 21 H 0.057 0.943 22 H 0.063 0.937 23 H 0.032 0.968 24 H 0.075 0.925 25 H 0.041 0.959 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.341 0.659 30 H 0.056 0.944 31 H 0.015 0.985 32 H 0.014 0.986 33 H 0.025 0.975 34 H 0.260 0.740 35 H 0.041 0.959 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.472 -12.264 -2.777 18.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.087 4.087 3 N -0.243 5.243 4 C -0.090 4.090 5 C -0.193 4.193 6 C -0.033 4.033 7 H 0.096 0.904 8 N -0.312 5.312 9 C -0.062 4.062 10 C -0.013 4.013 11 C -0.560 4.560 12 H 0.072 0.928 13 C -0.144 4.144 14 N -0.532 5.532 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.085 4.085 20 H 0.073 0.927 21 H 0.076 0.924 22 H 0.082 0.918 23 H 0.050 0.950 24 H 0.093 0.907 25 H 0.059 0.941 26 H 0.097 0.903 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.159 0.841 30 H 0.075 0.925 31 H 0.033 0.967 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.968 -12.421 -2.071 18.076 hybrid contribution 0.054 0.888 -1.683 1.904 sum -12.914 -11.533 -3.755 17.716 Atomic orbital electron populations 1.21846 0.95099 1.01553 1.02454 1.22255 0.95796 0.89879 1.00749 1.64849 1.05086 1.11346 1.43044 1.23151 0.98613 0.94682 0.92589 1.23278 0.96132 0.97861 1.02050 1.22388 0.91320 0.93303 0.96300 0.90432 1.60645 1.28951 1.24000 1.17621 1.22176 0.95445 0.93543 0.95038 1.19071 0.94084 0.93047 0.95091 1.21177 1.23864 1.17901 0.93101 0.92808 1.25004 0.96930 0.97429 0.95008 1.69972 1.36938 1.35582 1.10735 0.86592 0.79429 0.81033 0.80912 1.20714 1.21190 1.19906 1.22988 0.87848 0.96492 1.01202 0.92700 0.92433 0.91820 0.95010 0.90681 0.94107 0.90349 0.90489 0.91273 0.84064 0.92521 0.96680 0.96783 0.95649 0.92991 0.94035 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.57 37.16 0.36 -0.95 16 2 C 0.04 0.43 5.75 -3.82 -0.02 0.40 16 3 N -0.52 -6.46 5.40 -230.45 -1.24 -7.70 16 4 C 0.04 0.44 5.11 -1.90 -0.01 0.43 16 5 C -0.15 -2.02 6.72 -24.87 -0.17 -2.19 16 6 C 0.08 1.17 3.31 -66.36 -0.22 0.95 16 7 H 0.08 1.17 7.82 -51.93 -0.41 0.76 16 8 N -0.68 -12.40 6.20 -105.29 -0.65 -13.05 16 9 C 0.07 1.41 5.48 -3.83 -0.02 1.39 16 10 C 0.02 0.65 5.23 -27.89 -0.15 0.50 16 11 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 12 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -27.21 13.29 55.43 0.74 -26.48 16 15 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 C 0.04 0.58 6.50 -2.75 -0.02 0.57 16 20 H 0.05 0.46 6.79 -51.93 -0.35 0.11 16 21 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.03 0.32 7.81 -51.93 -0.41 -0.09 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.44 8.00 -51.93 -0.42 0.03 16 26 H 0.08 0.84 7.65 -51.93 -0.40 0.44 16 27 H 0.08 1.07 7.56 -51.92 -0.39 0.68 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.34 6.15 8.10 -39.29 -0.32 5.83 16 30 H 0.06 1.21 8.07 -51.93 -0.42 0.79 16 31 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.04 0.53 7.57 -51.93 -0.39 0.13 16 36 H 0.09 1.38 7.93 -51.93 -0.41 0.97 16 LS Contribution 288.32 15.07 4.34 4.34 Total: -1.00 -29.88 288.32 -8.91 -38.79 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.41 Total: -0.11 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -0.66 Total: -12.62 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -1.16 Total: -47.23 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.88 -8.91 -38.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389306734.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.352 kcal (2) G-P(sol) polarization free energy of solvation -29.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds