Wall clock time and date at job start Sun Mar 29 2020 21:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46897 * 109.47395 * 2 1 4 4 C 1.48538 * 111.00123 * 307.40108 * 3 2 1 5 5 C 1.54933 * 103.22579 * 200.28130 * 4 3 2 6 6 C 1.54593 * 102.92591 * 37.41127 * 5 4 3 7 7 H 1.08998 * 110.30989 * 96.95784 * 6 5 4 8 8 N 1.46897 * 110.31124 * 219.12802 * 6 5 4 9 9 C 1.46896 * 111.00347 * 270.71771 * 8 6 5 10 10 C 1.53000 * 109.47769 * 179.97438 * 9 8 6 11 11 C 1.50693 * 109.47240 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00482 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99717 * 179.97438 * 11 10 9 14 14 N 1.31513 * 120.00543 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99945 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46935 * 89.99977 * 15 13 11 17 17 H 1.48503 * 109.47249 * 209.99949 * 15 13 11 18 18 H 1.48494 * 109.47378 * 330.00198 * 15 13 11 19 19 C 1.47899 * 111.00068 * 190.00265 * 3 2 1 20 20 H 1.09000 * 109.47068 * 59.99554 * 1 2 3 21 21 H 1.08997 * 109.47471 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46673 * 300.00106 * 1 2 3 23 23 H 1.09002 * 109.46752 * 240.00442 * 2 1 3 24 24 H 1.09000 * 109.47068 * 120.00446 * 2 1 3 25 25 H 1.09007 * 110.66246 * 318.71191 * 4 3 2 26 26 H 1.08993 * 110.66671 * 81.67342 * 4 3 2 27 27 H 1.09007 * 110.72333 * 279.05054 * 5 4 3 28 28 H 1.09004 * 110.72411 * 155.77248 * 5 4 3 29 29 H 1.00907 * 110.99841 * 34.66759 * 8 6 5 30 30 H 1.09003 * 109.47059 * 300.00154 * 9 8 6 31 31 H 1.09005 * 109.47160 * 59.99764 * 9 8 6 32 32 H 1.08996 * 109.46747 * 300.00149 * 10 9 8 33 33 H 1.09005 * 109.46860 * 59.99718 * 10 9 8 34 34 H 0.97000 * 120.00626 * 180.02562 * 14 13 11 35 35 H 1.09004 * 109.91646 * 26.49394 * 19 3 2 36 36 H 1.09001 * 110.08341 * 265.29071 * 19 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.4031 2.1676 -1.1016 5 6 2.3782 3.3585 -1.2793 6 6 3.7624 2.7090 -1.0513 7 1 4.2236 2.4561 -2.0060 8 7 4.6313 3.6150 -0.2882 9 6 5.3821 4.5038 -1.1849 10 6 6.2732 5.4307 -0.3557 11 6 7.0439 6.3420 -1.2757 12 1 6.9118 6.2673 -2.3450 13 6 7.9178 7.2712 -0.7524 14 7 8.0792 7.3620 0.5497 15 14 8.8737 8.4005 -1.8928 16 1 8.0908 9.6393 -2.1331 17 1 10.1742 8.7503 -1.2671 18 1 9.1159 7.7096 -3.1847 19 6 3.4784 1.4313 -0.2398 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 1.3517 1.5731 -2.0139 26 1 0.4114 2.5183 -0.8161 27 1 2.1860 4.1291 -0.5326 28 1 2.3060 3.7692 -2.2864 29 1 4.0984 4.1460 0.3842 30 1 6.0016 3.9062 -1.8537 31 1 4.6846 5.1009 -1.7724 32 1 5.6534 6.0282 0.3127 33 1 6.9708 4.8340 0.2321 34 1 8.6937 8.0159 0.9179 35 1 3.7895 0.5542 -0.8074 36 1 4.0129 1.4679 0.7095 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389306734.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:39 Heat of formation + Delta-G solvation = -28.646778 kcal Electronic energy + Delta-G solvation = -14061.742573 eV Core-core repulsion = 11772.187430 eV Total energy + Delta-G solvation = -2289.555143 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.27549 -37.13666 -35.15174 -33.36264 -30.92827 -30.21941 -28.01521 -25.65045 -24.04932 -22.50366 -21.54404 -21.36671 -18.52470 -17.17466 -16.87388 -16.51158 -16.10615 -15.51896 -15.26667 -14.82254 -14.30277 -13.83038 -13.62399 -13.60416 -13.28657 -12.93508 -12.76793 -12.59861 -12.39617 -12.26566 -12.17126 -11.91956 -11.86295 -11.69266 -11.38451 -11.18237 -10.56485 -9.35614 -9.22520 -8.19989 -6.31854 1.40597 1.42432 1.53584 2.40807 3.03523 3.13341 3.31450 3.72491 3.79176 4.14270 4.23607 4.30977 4.32788 4.47841 4.58105 4.62811 4.63821 4.69305 4.86813 4.91675 4.96984 5.02825 5.07153 5.12699 5.19416 5.31551 5.45651 5.67589 5.79187 5.92110 6.13264 6.17228 6.31501 6.53768 6.85634 7.37540 8.92273 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.089989 B = 0.004720 C = 0.004631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 311.074069 B = 5931.058710 C = 6045.025702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.039 3.961 3 N -0.532 5.532 4 C 0.045 3.955 5 C -0.150 4.150 6 C 0.076 3.924 7 H 0.079 0.921 8 N -0.688 5.688 9 C 0.087 3.913 10 C 0.031 3.969 11 C -0.545 4.545 12 H 0.061 0.939 13 C 0.000 4.000 14 N -0.932 5.932 15 Si 0.968 3.032 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.263 1.263 19 C 0.049 3.951 20 H 0.058 0.942 21 H 0.073 0.927 22 H 0.057 0.943 23 H 0.038 0.962 24 H 0.075 0.925 25 H 0.053 0.947 26 H 0.090 0.910 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.340 0.660 30 H 0.057 0.943 31 H 0.020 0.980 32 H -0.010 1.010 33 H -0.007 1.007 34 H 0.264 0.736 35 H 0.053 0.947 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.310 -12.700 -4.277 19.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.089 4.089 3 N -0.257 5.257 4 C -0.083 4.083 5 C -0.190 4.190 6 C -0.035 4.035 7 H 0.097 0.903 8 N -0.319 5.319 9 C -0.042 4.042 10 C -0.007 4.007 11 C -0.583 4.583 12 H 0.079 0.921 13 C -0.198 4.198 14 N -0.572 5.572 15 Si 0.792 3.208 16 H -0.197 1.197 17 H -0.207 1.207 18 H -0.187 1.187 19 C -0.079 4.079 20 H 0.077 0.923 21 H 0.092 0.908 22 H 0.076 0.924 23 H 0.056 0.944 24 H 0.093 0.907 25 H 0.072 0.928 26 H 0.108 0.892 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.158 0.842 30 H 0.075 0.925 31 H 0.038 0.962 32 H 0.009 0.991 33 H 0.012 0.988 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.829 -12.879 -3.579 19.233 hybrid contribution 0.284 0.974 -1.164 1.544 sum -13.545 -11.905 -4.743 18.646 Atomic orbital electron populations 1.21812 0.93686 1.02645 1.02304 1.22337 0.96949 0.88581 1.01036 1.64833 1.04237 1.12948 1.43684 1.23140 0.98453 0.93833 0.92883 1.23213 0.95371 0.98261 1.02151 1.22471 0.91706 0.93238 0.96120 0.90314 1.60563 1.30176 1.23503 1.17611 1.21775 0.95012 0.93080 0.94361 1.18930 0.93826 0.93112 0.94823 1.21613 1.24420 1.18546 0.93761 0.92088 1.25998 0.97975 0.99154 0.96694 1.70111 1.37749 1.36511 1.12857 0.85403 0.77745 0.78772 0.78839 1.19676 1.20726 1.18669 1.22833 0.88841 0.96054 1.00175 0.92338 0.90782 0.92424 0.94425 0.90692 0.92836 0.89205 0.91533 0.90497 0.84164 0.92498 0.96178 0.99126 0.98835 0.92727 0.92923 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.57 71.98 0.69 -1.47 16 2 C 0.04 0.72 5.75 86.30 0.50 1.21 16 3 N -0.53 -12.38 5.40 -883.00 -4.76 -17.14 16 4 C 0.04 0.93 5.11 86.65 0.44 1.37 16 5 C -0.15 -3.74 6.72 31.80 0.21 -3.53 16 6 C 0.08 2.18 3.31 45.79 0.15 2.34 16 7 H 0.08 2.26 7.82 -2.39 -0.02 2.24 16 8 N -0.69 -25.17 6.20 -487.04 -3.02 -28.20 16 9 C 0.09 3.71 5.48 86.30 0.47 4.18 16 10 C 0.03 1.67 5.23 29.85 0.16 1.82 16 11 C -0.54 -31.58 9.11 25.60 0.23 -31.35 16 12 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 13 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 14 N -0.93 -57.75 13.29 21.45 0.28 -57.47 16 15 Si 0.97 44.63 29.54 68.60 2.03 46.65 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 19 C 0.05 1.29 6.50 86.45 0.56 1.85 16 20 H 0.06 0.82 6.79 -2.39 -0.02 0.80 16 21 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 22 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.04 0.66 7.81 -2.39 -0.02 0.64 16 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.05 1.00 8.00 -2.38 -0.02 0.98 16 26 H 0.09 1.69 7.65 -2.39 -0.02 1.67 16 27 H 0.07 1.80 7.56 -2.38 -0.02 1.79 16 28 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 29 H 0.34 12.50 8.10 -89.69 -0.73 11.77 16 30 H 0.06 2.42 8.07 -2.39 -0.02 2.40 16 31 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 32 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 33 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 34 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 35 H 0.05 1.25 7.57 -2.39 -0.02 1.23 16 36 H 0.08 2.24 7.93 -2.39 -0.02 2.22 16 Total: -1.00 -63.83 288.32 -1.30 -65.13 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.30 Total: 14.15 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: 3.88 Total: -23.13 kcal Atomic # 7 Polarization: -95.30 SS G_CDS: -7.50 Total: -102.80 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -63.83 -1.30 -65.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389306734.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.482 kcal (2) G-P(sol) polarization free energy of solvation -63.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds