Wall clock time and date at job start Sun Mar 29 2020 21:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47097 * 2 1 4 4 C 1.47905 * 111.00013 * 69.87410 * 3 2 1 5 5 C 1.53994 * 107.05809 * 145.84715 * 4 3 2 6 6 C 1.54594 * 105.13864 * 358.77085 * 5 4 3 7 7 H 1.09007 * 110.72003 * 96.58292 * 6 5 4 8 8 N 1.46897 * 110.72526 * 219.68302 * 6 5 4 9 9 C 1.46899 * 111.00355 * 273.55282 * 8 6 5 10 10 H 1.09002 * 109.47043 * 324.99919 * 9 8 6 11 11 C 1.53002 * 109.47394 * 84.99974 * 9 8 6 12 12 C 1.50703 * 109.47107 * 204.99940 * 9 8 6 13 13 H 1.07996 * 119.99751 * 359.97438 * 12 9 8 14 14 C 1.37877 * 120.00001 * 180.02562 * 12 9 8 15 15 N 1.31517 * 120.00094 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99955 * 180.02562 * 14 12 9 17 17 H 1.48498 * 109.47171 * 89.99544 * 16 14 12 18 18 H 1.48500 * 109.46632 * 209.99795 * 16 14 12 19 19 H 1.48494 * 109.47053 * 329.99231 * 16 14 12 20 20 C 1.48534 * 111.00084 * 187.27080 * 3 2 1 21 21 H 1.09003 * 109.46981 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47450 * 299.99942 * 1 2 3 23 23 H 1.08998 * 109.47001 * 59.99992 * 1 2 3 24 24 H 1.08998 * 109.47450 * 240.00058 * 2 1 3 25 25 H 1.08998 * 109.47001 * 120.00008 * 2 1 3 26 26 H 1.08992 * 109.91600 * 26.49108 * 4 3 2 27 27 H 1.09004 * 110.07816 * 265.29144 * 4 3 2 28 28 H 1.09002 * 110.30317 * 239.86121 * 5 4 3 29 29 H 1.08992 * 110.39280 * 117.73477 * 5 4 3 30 30 H 1.00898 * 111.00020 * 149.59115 * 8 6 5 31 31 H 1.08996 * 109.47407 * 180.02562 * 11 9 8 32 32 H 1.09000 * 109.46986 * 300.00133 * 11 9 8 33 33 H 1.09002 * 109.47075 * 59.99404 * 11 9 8 34 34 H 0.97000 * 120.00333 * 179.97438 * 15 14 12 35 35 H 1.09000 * 110.67096 * 81.84500 * 20 3 2 36 36 H 1.08999 * 110.66807 * 318.70976 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7484 2.0431 1.2965 5 6 2.9180 3.0077 1.5669 6 6 3.8743 2.8295 0.3654 7 1 3.6956 3.5979 -0.3869 8 7 5.2749 2.8535 0.8077 9 6 5.7835 4.2302 0.8710 10 1 5.3392 4.8189 0.0684 11 6 5.4152 4.8485 2.2212 12 6 7.2825 4.2195 0.7156 13 1 7.8050 3.2836 0.5835 14 6 7.9869 5.4044 0.7431 15 7 7.3506 6.5441 0.9045 16 14 9.8448 5.3912 0.5498 17 1 10.1936 5.5052 -0.8891 18 1 10.4279 6.5372 1.2928 19 1 10.3899 4.1209 1.0921 20 6 3.4940 1.4283 -0.1755 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6929 1.2956 2.0878 27 1 0.8124 2.5994 1.2452 28 1 3.4226 2.7394 2.4951 29 1 2.5590 4.0356 1.6156 30 1 5.8526 2.2816 0.2101 31 1 5.7922 5.8701 2.2680 32 1 4.3310 4.8562 2.3336 33 1 5.8594 4.2597 3.0237 34 1 7.8462 7.3777 0.9243 35 1 3.7589 1.3377 -1.2289 36 1 3.9745 0.6459 0.4118 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389427484.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:48 Heat of formation + Delta-G solvation = -1.018837 kcal Electronic energy + Delta-G solvation = -14547.876308 eV Core-core repulsion = 12259.519202 eV Total energy + Delta-G solvation = -2288.357106 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.89217 -35.62920 -33.12272 -31.48178 -29.12042 -28.57837 -26.07403 -24.97045 -22.81696 -20.64988 -20.20336 -19.33041 -16.47433 -15.94363 -15.56572 -14.77779 -14.26440 -13.93400 -13.62146 -13.24712 -12.82908 -12.61022 -12.27996 -11.61665 -11.44136 -11.37422 -11.09034 -10.96308 -10.93474 -10.73293 -10.64028 -10.41352 -10.05951 -9.98364 -9.75887 -8.78240 -8.45167 -8.28830 -7.30698 -6.01166 -4.07813 3.30012 3.36655 3.40434 4.09854 4.41646 4.92376 5.01202 5.15537 5.27108 5.33649 5.40507 5.48486 5.50123 5.69500 5.74663 5.91417 5.92646 6.04995 6.12623 6.25223 6.35847 6.54814 6.65161 6.93140 7.04595 7.17917 7.21317 7.27755 7.54964 7.79646 7.92162 8.29205 8.40938 8.68927 9.02953 9.58120 11.04988 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.070563 B = 0.006142 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.711227 B = 4557.562586 C = 4807.849510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.042 3.958 3 N -0.519 5.519 4 C 0.039 3.961 5 C -0.119 4.119 6 C 0.086 3.914 7 H 0.049 0.951 8 N -0.682 5.682 9 C 0.212 3.788 10 H 0.001 0.999 11 C -0.126 4.126 12 C -0.519 4.519 13 H 0.059 0.941 14 C 0.062 3.938 15 N -0.890 5.890 16 Si 0.896 3.104 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.274 1.274 20 C 0.035 3.965 21 H 0.054 0.946 22 H 0.053 0.947 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.033 0.967 26 H 0.040 0.960 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.331 0.669 31 H 0.078 0.922 32 H 0.010 0.990 33 H 0.029 0.971 34 H 0.261 0.739 35 H 0.075 0.925 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.084 -9.455 -0.702 13.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.087 4.087 3 N -0.244 5.244 4 C -0.090 4.090 5 C -0.157 4.157 6 C -0.025 4.025 7 H 0.067 0.933 8 N -0.313 5.313 9 C 0.105 3.895 10 H 0.019 0.981 11 C -0.184 4.184 12 C -0.558 4.558 13 H 0.077 0.923 14 C -0.140 4.140 15 N -0.528 5.528 16 Si 0.724 3.276 17 H -0.208 1.208 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.093 4.093 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.080 0.920 24 H 0.089 0.911 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.149 0.851 31 H 0.097 0.903 32 H 0.029 0.971 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.480 -9.014 -0.441 13.830 hybrid contribution 1.495 -0.149 -0.340 1.541 sum -8.984 -9.163 -0.780 12.856 Atomic orbital electron populations 1.21740 0.95058 1.01099 1.02424 1.22223 0.96070 0.89772 1.00600 1.64716 1.12844 1.15291 1.31532 1.22883 0.99377 0.96994 0.89706 1.22513 0.94659 0.98712 0.99857 1.22366 0.91009 0.94494 0.94621 0.93319 1.60804 1.00073 1.15454 1.55014 1.19149 0.93987 0.82657 0.93709 0.98100 1.21773 0.95999 1.02662 0.98010 1.21279 0.91709 0.92958 1.49820 0.92286 1.24918 0.98532 0.95480 0.95061 1.69902 1.35400 0.97604 1.49937 0.86530 0.85404 0.77641 0.78014 1.20765 1.21217 1.19883 1.23342 0.87334 0.97952 1.00679 0.92661 0.92822 0.91980 0.91094 0.94877 0.94198 0.91022 0.90407 0.91655 0.85095 0.90315 0.97125 0.95207 0.92951 0.90619 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.97 37.16 0.37 -1.09 16 2 C 0.04 0.50 5.48 -3.82 -0.02 0.48 16 3 N -0.52 -7.50 5.27 -230.45 -1.21 -8.71 16 4 C 0.04 0.55 5.79 -2.75 -0.02 0.54 16 5 C -0.12 -2.01 4.98 -25.37 -0.13 -2.14 16 6 C 0.09 1.60 3.35 -65.85 -0.22 1.38 16 7 H 0.05 1.00 7.53 -51.92 -0.39 0.61 16 8 N -0.68 -14.62 6.14 -99.01 -0.61 -15.22 16 9 C 0.21 5.42 2.60 -68.86 -0.18 5.24 16 10 H 0.00 0.04 7.49 -51.93 -0.39 -0.35 16 11 C -0.13 -3.16 8.99 37.16 0.33 -2.82 16 12 C -0.52 -14.32 8.59 -34.44 -0.30 -14.61 16 13 H 0.06 1.60 7.62 -52.49 -0.40 1.20 16 14 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 15 N -0.89 -25.62 11.32 55.43 0.63 -24.99 16 16 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.04 0.55 5.97 -1.90 -0.01 0.53 16 21 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.05 0.54 7.52 -51.93 -0.39 0.15 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 25 H 0.03 0.39 7.82 -51.93 -0.41 -0.01 16 26 H 0.04 0.54 7.57 -51.93 -0.39 0.14 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.40 8.02 -51.93 -0.42 0.99 16 29 H 0.06 1.13 7.54 -51.93 -0.39 0.73 16 30 H 0.33 6.91 7.99 -39.29 -0.31 6.60 16 31 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 32 H 0.01 0.22 5.95 -51.93 -0.31 -0.08 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.05 0.80 8.02 -51.93 -0.42 0.38 16 LS Contribution 280.87 15.07 4.23 4.23 Total: -1.00 -28.30 280.87 -8.44 -36.74 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -6.20 Total: 2.50 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: -0.26 Total: -10.87 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -1.19 Total: -48.92 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.30 -8.44 -36.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389427484.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.722 kcal (2) G-P(sol) polarization free energy of solvation -28.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds