Wall clock time and date at job start Sun Mar 29 2020 21:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47097 * 2 1 4 4 C 1.47905 * 111.00013 * 69.87410 * 3 2 1 5 5 C 1.53994 * 107.05809 * 145.84715 * 4 3 2 6 6 C 1.54594 * 105.13864 * 358.77085 * 5 4 3 7 7 H 1.09007 * 110.72003 * 96.58292 * 6 5 4 8 8 N 1.46897 * 110.72526 * 219.68302 * 6 5 4 9 9 C 1.46899 * 111.00355 * 273.55282 * 8 6 5 10 10 H 1.09002 * 109.47043 * 324.99919 * 9 8 6 11 11 C 1.53002 * 109.47394 * 84.99974 * 9 8 6 12 12 C 1.50703 * 109.47107 * 204.99940 * 9 8 6 13 13 H 1.07996 * 119.99751 * 359.97438 * 12 9 8 14 14 C 1.37877 * 120.00001 * 180.02562 * 12 9 8 15 15 N 1.31517 * 120.00094 * 359.97438 * 14 12 9 16 16 Si 1.86803 * 119.99955 * 180.02562 * 14 12 9 17 17 H 1.48498 * 109.47171 * 89.99544 * 16 14 12 18 18 H 1.48500 * 109.46632 * 209.99795 * 16 14 12 19 19 H 1.48494 * 109.47053 * 329.99231 * 16 14 12 20 20 C 1.48534 * 111.00084 * 187.27080 * 3 2 1 21 21 H 1.09003 * 109.46981 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47450 * 299.99942 * 1 2 3 23 23 H 1.08998 * 109.47001 * 59.99992 * 1 2 3 24 24 H 1.08998 * 109.47450 * 240.00058 * 2 1 3 25 25 H 1.08998 * 109.47001 * 120.00008 * 2 1 3 26 26 H 1.08992 * 109.91600 * 26.49108 * 4 3 2 27 27 H 1.09004 * 110.07816 * 265.29144 * 4 3 2 28 28 H 1.09002 * 110.30317 * 239.86121 * 5 4 3 29 29 H 1.08992 * 110.39280 * 117.73477 * 5 4 3 30 30 H 1.00898 * 111.00020 * 149.59115 * 8 6 5 31 31 H 1.08996 * 109.47407 * 180.02562 * 11 9 8 32 32 H 1.09000 * 109.46986 * 300.00133 * 11 9 8 33 33 H 1.09002 * 109.47075 * 59.99404 * 11 9 8 34 34 H 0.97000 * 120.00333 * 179.97438 * 15 14 12 35 35 H 1.09000 * 110.67096 * 81.84500 * 20 3 2 36 36 H 1.08999 * 110.66807 * 318.70976 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7484 2.0431 1.2965 5 6 2.9180 3.0077 1.5669 6 6 3.8743 2.8295 0.3654 7 1 3.6956 3.5979 -0.3869 8 7 5.2749 2.8535 0.8077 9 6 5.7835 4.2302 0.8710 10 1 5.3392 4.8189 0.0684 11 6 5.4152 4.8485 2.2212 12 6 7.2825 4.2195 0.7156 13 1 7.8050 3.2836 0.5835 14 6 7.9869 5.4044 0.7431 15 7 7.3506 6.5441 0.9045 16 14 9.8448 5.3912 0.5498 17 1 10.1936 5.5052 -0.8891 18 1 10.4279 6.5372 1.2928 19 1 10.3899 4.1209 1.0921 20 6 3.4940 1.4283 -0.1755 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6929 1.2956 2.0878 27 1 0.8124 2.5994 1.2452 28 1 3.4226 2.7394 2.4951 29 1 2.5590 4.0356 1.6156 30 1 5.8526 2.2816 0.2101 31 1 5.7922 5.8701 2.2680 32 1 4.3310 4.8562 2.3336 33 1 5.8594 4.2597 3.0237 34 1 7.8462 7.3777 0.9243 35 1 3.7589 1.3377 -1.2289 36 1 3.9745 0.6459 0.4118 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389427484.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:48 Heat of formation + Delta-G solvation = -20.776880 kcal Electronic energy + Delta-G solvation = -14548.733081 eV Core-core repulsion = 12259.519202 eV Total energy + Delta-G solvation = -2289.213879 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.18596 -37.33568 -34.81012 -33.02586 -30.65440 -29.93117 -27.71856 -26.94722 -23.86952 -22.10818 -21.87115 -20.80783 -18.50337 -17.22088 -16.84106 -16.74857 -15.58259 -15.35478 -15.12168 -14.84511 -14.23135 -14.02077 -13.59520 -13.18150 -12.98149 -12.80433 -12.71934 -12.47905 -12.39207 -12.27706 -12.13329 -12.06320 -11.77700 -11.66281 -11.39000 -10.84059 -10.56047 -9.40206 -9.13032 -8.13234 -6.28029 1.42190 1.43226 1.54041 2.41292 2.95418 3.15412 3.67477 3.74012 3.83305 4.17578 4.27257 4.34303 4.43589 4.60148 4.64921 4.70060 4.84265 4.93224 4.95693 4.98316 5.06201 5.11350 5.20647 5.23621 5.25428 5.36965 5.49880 5.67105 5.83789 5.91888 6.13158 6.22529 6.47107 6.77428 6.99567 7.42618 8.92374 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.070563 B = 0.006142 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 396.711227 B = 4557.562586 C = 4807.849510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.039 3.961 3 N -0.528 5.528 4 C 0.047 3.953 5 C -0.116 4.116 6 C 0.080 3.920 7 H 0.025 0.975 8 N -0.676 5.676 9 C 0.218 3.782 10 H -0.035 1.035 11 C -0.113 4.113 12 C -0.539 4.539 13 H 0.060 0.940 14 C 0.012 3.988 15 N -0.919 5.919 16 Si 0.964 3.036 17 H -0.275 1.275 18 H -0.283 1.283 19 H -0.267 1.267 20 C 0.047 3.953 21 H 0.075 0.925 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.078 0.922 25 H 0.037 0.963 26 H 0.053 0.947 27 H 0.084 0.916 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.334 0.666 31 H 0.053 0.947 32 H 0.029 0.971 33 H 0.025 0.975 34 H 0.262 0.738 35 H 0.081 0.919 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.391 -10.970 -0.702 15.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.089 4.089 3 N -0.253 5.253 4 C -0.081 4.081 5 C -0.155 4.155 6 C -0.031 4.031 7 H 0.043 0.957 8 N -0.307 5.307 9 C 0.110 3.890 10 H -0.017 1.017 11 C -0.172 4.172 12 C -0.578 4.578 13 H 0.078 0.922 14 C -0.187 4.187 15 N -0.558 5.558 16 Si 0.790 3.210 17 H -0.201 1.201 18 H -0.209 1.209 19 H -0.192 1.192 20 C -0.081 4.081 21 H 0.093 0.907 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.097 0.903 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.152 0.848 31 H 0.072 0.928 32 H 0.047 0.953 33 H 0.045 0.955 34 H 0.071 0.929 35 H 0.100 0.900 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.805 -10.551 -0.442 15.108 hybrid contribution 1.533 0.312 -0.354 1.604 sum -9.272 -10.239 -0.796 13.836 Atomic orbital electron populations 1.21712 0.93561 1.02390 1.02178 1.22340 0.97267 0.88105 1.01171 1.64754 1.11679 1.17257 1.31596 1.22824 0.98417 0.96720 0.90160 1.22444 0.95314 0.99208 0.98545 1.22418 0.89569 0.96059 0.95044 0.95659 1.60735 1.01590 1.13018 1.55393 1.18937 0.93257 0.84266 0.92578 1.01717 1.21588 0.97056 1.00904 0.97619 1.21614 0.92863 0.93214 1.50083 0.92164 1.25756 1.03249 0.95073 0.94606 1.70036 1.37165 0.98154 1.50432 0.85462 0.79653 0.77794 0.78136 1.20095 1.20880 1.19167 1.23186 0.88422 0.95656 1.00867 0.90652 0.92862 0.92415 0.90321 0.94495 0.92858 0.89790 0.91385 0.92454 0.84839 0.92828 0.95252 0.95543 0.92851 0.90036 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.97 71.98 0.72 -1.70 16 2 C 0.04 0.82 5.48 86.30 0.47 1.29 16 3 N -0.53 -14.17 5.27 -883.02 -4.65 -18.82 16 4 C 0.05 1.24 5.79 86.45 0.50 1.74 16 5 C -0.12 -3.88 4.98 31.47 0.16 -3.72 16 6 C 0.08 2.97 3.35 46.12 0.15 3.13 16 7 H 0.03 1.07 7.53 -2.38 -0.02 1.05 16 8 N -0.68 -29.15 6.14 -467.15 -2.87 -32.02 16 9 C 0.22 11.38 2.60 44.17 0.11 11.49 16 10 H -0.03 -2.03 7.49 -2.39 -0.02 -2.04 16 11 C -0.11 -5.77 8.99 71.98 0.65 -5.12 16 12 C -0.54 -30.02 8.59 25.60 0.22 -29.80 16 13 H 0.06 3.26 7.62 -2.91 -0.02 3.24 16 14 C 0.01 0.69 5.30 84.65 0.45 1.14 16 15 N -0.92 -53.70 11.32 21.45 0.24 -53.46 16 16 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 17 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 20 C 0.05 1.40 5.97 86.65 0.52 1.92 16 21 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.05 0.92 7.52 -2.39 -0.02 0.90 16 23 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.08 1.53 8.11 -2.39 -0.02 1.51 16 25 H 0.04 0.76 7.82 -2.39 -0.02 0.74 16 26 H 0.05 1.29 7.57 -2.39 -0.02 1.27 16 27 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.07 2.40 8.02 -2.39 -0.02 2.38 16 29 H 0.06 1.97 7.54 -2.39 -0.02 1.95 16 30 H 0.33 13.93 7.99 -89.70 -0.72 13.21 16 31 H 0.05 2.99 6.07 -2.39 -0.01 2.98 16 32 H 0.03 1.33 5.95 -2.39 -0.01 1.31 16 33 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 35 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.06 1.62 8.02 -2.39 -0.02 1.60 16 Total: -1.00 -60.09 280.87 -0.98 -61.07 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.32 Total: 17.09 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 3.95 Total: -19.63 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -7.28 Total: -104.30 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -60.09 -0.98 -61.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389427484.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.296 kcal (2) G-P(sol) polarization free energy of solvation -60.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds