Wall clock time and date at job start Sun Mar 29 2020 21:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46895 * 110.99861 * 2 1 4 4 C 1.50695 * 109.47392 * 66.04694 * 3 2 1 5 5 H 1.08002 * 120.00028 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00236 * 179.97438 * 4 3 2 7 7 N 1.31518 * 120.00021 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00146 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.47348 * 90.00473 * 8 6 4 10 10 H 1.48502 * 109.47071 * 210.00640 * 8 6 4 11 11 H 1.48507 * 109.46959 * 330.00187 * 8 6 4 12 12 C 1.46905 * 110.99885 * 236.04286 * 2 1 3 13 13 C 1.50699 * 109.47298 * 293.95861 * 12 2 1 14 14 C 1.35337 * 123.76799 * 94.99710 * 13 12 2 15 15 S 1.72118 * 104.15428 * 179.97438 * 14 13 12 16 16 N 1.56515 * 95.88471 * 0.02562 * 15 14 13 17 17 N 1.27573 * 109.22052 * 359.97438 * 16 15 14 18 18 H 1.08999 * 109.47076 * 183.95441 * 1 2 3 19 19 H 1.09001 * 109.47005 * 303.95359 * 1 2 3 20 20 H 1.08997 * 109.46799 * 63.95271 * 1 2 3 21 21 H 1.09003 * 109.47028 * 186.04313 * 3 2 1 22 22 H 1.09004 * 109.47288 * 306.04030 * 3 2 1 23 23 H 0.97000 * 119.99996 * 179.97438 * 7 6 4 24 24 H 1.08997 * 109.47069 * 173.95672 * 12 2 1 25 25 H 1.09001 * 109.46721 * 53.95600 * 12 2 1 26 26 H 1.07998 * 127.92351 * 359.94507 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0740 1.5115 2.0484 6 6 2.0277 3.3491 1.5288 7 7 2.7129 4.0016 0.6153 8 14 1.5827 4.1869 3.1380 9 1 2.6587 3.9501 4.1336 10 1 1.4312 5.6466 2.9108 11 1 0.3042 3.6302 3.6489 12 6 1.9955 -0.7661 -1.1376 13 6 1.6369 -2.2205 -0.9729 14 6 0.5472 -2.7947 -1.5336 15 16 0.6295 -4.4376 -1.0268 16 7 1.9483 -4.2840 -0.1981 17 7 2.3493 -3.0749 -0.2671 18 1 -0.3633 -1.0252 0.0709 19 1 -0.3633 0.5740 0.8525 20 1 -0.3633 0.4513 -0.9233 21 1 3.0798 1.3444 -0.1082 22 1 1.5612 1.9273 -0.8310 23 1 2.9874 4.9177 0.7773 24 1 3.0798 -0.6612 -1.1756 25 1 1.5611 -0.3873 -2.0628 26 1 -0.2025 -2.3289 -2.1559 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393376633.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:53 Heat of formation + Delta-G solvation = 76.852283 kcal Electronic energy + Delta-G solvation = -11860.622321 eV Core-core repulsion = 9681.302731 eV Total energy + Delta-G solvation = -2179.319590 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.73914 -36.65471 -32.91891 -31.76785 -27.67628 -27.20948 -26.28369 -23.86446 -21.13732 -20.47757 -18.09462 -16.39552 -15.76520 -15.57014 -14.77087 -14.28456 -13.95493 -13.85304 -12.71636 -12.22026 -11.97696 -11.90082 -11.32449 -11.11296 -10.95155 -10.66219 -10.54825 -9.97496 -9.93046 -9.75010 -9.53385 -9.24869 -8.45136 -7.35527 -6.04681 -4.05929 0.35755 1.22319 1.82370 2.42449 3.32392 3.38235 3.41668 4.24622 4.42384 4.91005 5.06950 5.16977 5.31872 5.62603 5.84262 6.00918 6.11238 6.23585 6.65503 7.20484 7.25012 7.74780 7.96691 8.03338 8.11568 8.47423 9.00933 9.58230 11.06251 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.068798 B = 0.006377 C = 0.006283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.893224 B = 4389.605824 C = 4455.510913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.534 5.534 3 C 0.194 3.806 4 C -0.508 4.508 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.131 3.869 13 C 0.054 3.946 14 C -0.290 4.290 15 S 0.387 5.613 16 N -0.289 5.289 17 N -0.217 5.217 18 H 0.041 0.959 19 H 0.078 0.922 20 H 0.014 0.986 21 H 0.034 0.966 22 H -0.006 1.006 23 H 0.262 0.738 24 H 0.092 0.908 25 H 0.049 0.951 26 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.212 -12.715 -6.317 15.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.258 5.258 3 C 0.070 3.930 4 C -0.546 4.546 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 C -0.001 4.001 13 C -0.091 4.091 14 C -0.448 4.448 15 S 0.522 5.478 16 N -0.268 5.268 17 N -0.086 5.086 18 H 0.059 0.941 19 H 0.096 0.904 20 H 0.033 0.967 21 H 0.052 0.948 22 H 0.012 0.988 23 H 0.071 0.929 24 H 0.111 0.889 25 H 0.067 0.933 26 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -5.453 -14.449 -5.114 16.268 hybrid contribution -0.703 2.476 -0.436 2.610 sum -6.156 -11.973 -5.550 14.562 Atomic orbital electron populations 1.22277 0.88806 0.99395 1.00899 1.62076 1.07057 1.18028 1.38676 1.19776 0.95670 0.80645 0.96954 1.21128 1.34975 0.96897 1.01623 0.91837 1.24976 0.95249 0.97296 0.97022 1.69954 1.38315 1.11521 1.34019 0.86478 0.78892 0.78352 0.83570 1.20564 1.21309 1.19883 1.20527 1.01785 0.83950 0.93816 1.22490 0.91871 0.99588 0.95136 1.28117 1.05104 1.00929 1.10614 1.81255 1.23618 1.08630 1.34317 1.78994 1.11310 1.15196 1.21310 1.71188 1.26799 0.94737 1.15848 0.94061 0.90360 0.96742 0.94804 0.98774 0.92871 0.88924 0.93292 0.78927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.10 60.07 0.55 1.21 15 2 N -0.53 -11.55 4.74 -245.82 -1.17 -12.71 15 3 C 0.19 4.99 4.72 -4.98 -0.02 4.97 15 4 C -0.51 -14.24 8.46 -34.44 -0.29 -14.53 15 5 H 0.06 1.78 7.12 -52.49 -0.37 1.41 15 6 C 0.06 1.58 5.46 -17.82 -0.10 1.48 15 7 N -0.90 -26.51 13.29 55.43 0.74 -25.77 15 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 15 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 15 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 12 C 0.13 2.35 5.45 -4.97 -0.03 2.32 15 13 C 0.05 0.88 5.68 -83.66 -0.48 0.40 15 14 C -0.29 -3.58 10.19 29.70 0.30 -3.27 15 15 S 0.39 4.34 23.40 -107.50 -2.52 1.83 15 16 N -0.29 -4.60 12.54 60.35 0.76 -3.85 15 17 N -0.22 -3.93 11.68 32.45 0.38 -3.55 15 18 H 0.04 0.69 6.49 -51.93 -0.34 0.35 15 19 H 0.08 1.62 6.76 -51.93 -0.35 1.27 15 20 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 15 21 H 0.03 0.93 7.93 -51.93 -0.41 0.52 15 22 H -0.01 -0.15 8.12 -51.93 -0.42 -0.57 15 23 H 0.26 7.30 8.31 -40.82 -0.34 6.96 15 24 H 0.09 1.69 7.93 -51.93 -0.41 1.28 15 25 H 0.05 0.78 8.10 -51.93 -0.42 0.36 15 26 H 0.19 1.79 8.06 -52.49 -0.42 1.37 15 LS Contribution 242.53 15.07 3.65 3.65 Total: -1.00 -31.26 242.53 -5.95 -37.21 By element: Atomic # 1 Polarization: -3.34 SS G_CDS: -2.71 Total: -6.04 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -0.07 Total: -7.42 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 0.71 Total: -45.88 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -2.52 Total: 1.83 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -31.26 -5.95 -37.21 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393376633.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.059 kcal (2) G-P(sol) polarization free energy of solvation -31.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds