Wall clock time and date at job start Sun Mar 29 2020 22:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86806 * 119.99901 * 2 1 4 4 H 1.48498 * 109.47042 * 270.00147 * 3 2 1 5 5 H 1.48500 * 109.47192 * 30.00304 * 3 2 1 6 6 H 1.48503 * 109.46937 * 150.00293 * 3 2 1 7 7 C 1.40044 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00178 * 179.97438 * 7 2 1 9 9 C 1.46372 * 120.00303 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99450 * 359.97438 * 9 7 2 11 11 N 1.34775 * 120.00132 * 180.02562 * 9 7 2 12 12 C 1.47425 * 125.65032 * 354.98119 * 11 9 7 13 13 C 1.54907 * 104.83112 * 204.09712 * 12 11 9 14 14 C 1.55164 * 101.58220 * 322.99086 * 13 12 11 15 15 C 1.47028 * 125.64461 * 174.94363 * 11 9 7 16 16 H 1.08997 * 109.88182 * 59.55783 * 15 11 9 17 17 C 1.52994 * 109.88261 * 298.38836 * 15 11 9 18 18 C 1.52998 * 109.47218 * 176.87509 * 17 15 11 19 19 O 1.42900 * 109.47336 * 185.13465 * 18 17 15 20 20 H 0.97003 * 119.99839 * 359.97438 * 1 2 3 21 21 H 1.08993 * 110.36227 * 85.25828 * 12 11 9 22 22 H 1.09000 * 110.45448 * 322.98042 * 12 11 9 23 23 H 1.08997 * 111.00360 * 204.91919 * 13 12 11 24 24 H 1.09002 * 111.04188 * 81.07590 * 13 12 11 25 25 H 1.08995 * 110.72205 * 153.87145 * 14 13 12 26 26 H 1.09006 * 110.71795 * 277.14212 * 14 13 12 27 27 H 1.09004 * 109.47386 * 296.87540 * 17 15 11 28 28 H 1.09002 * 109.47288 * 56.87469 * 17 15 11 29 29 H 1.09002 * 109.47209 * 305.13140 * 18 17 15 30 30 H 1.09000 * 109.47598 * 65.13161 * 18 17 15 31 31 H 0.96698 * 114.00291 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4382 2.6527 0.7001 6 1 3.5383 1.4402 0.7000 7 6 2.0069 -1.2128 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0017 10 8 0.0582 -2.4804 -0.0017 11 7 1.9490 -3.6476 -0.0017 12 6 3.4122 -3.7950 -0.1054 13 6 3.6280 -5.2199 -0.6734 14 6 2.4964 -6.0118 0.0338 15 6 1.3467 -4.9848 0.1026 16 1 0.6559 -5.1457 -0.7251 17 6 0.6073 -5.1200 1.4351 18 6 -0.0807 -6.4850 1.5005 19 8 -0.8683 -6.5650 2.6902 20 1 -0.4850 0.8401 0.0004 21 1 3.8731 -3.7048 0.8781 22 1 3.8229 -3.0491 -0.7860 23 1 4.6083 -5.6070 -0.3955 24 1 3.4971 -5.2339 -1.7555 25 1 2.2042 -6.8789 -0.5585 26 1 2.8045 -6.3134 1.0350 27 1 1.3189 -5.0321 2.2561 28 1 -0.1411 -4.3317 1.5171 29 1 -0.7243 -6.6096 0.6297 30 1 0.6735 -7.2719 1.5105 31 1 -1.3345 -7.4053 2.7975 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393578281.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:17 Heat of formation + Delta-G solvation = -96.085729 kcal Electronic energy + Delta-G solvation = -14604.606750 eV Core-core repulsion = 12078.575478 eV Total energy + Delta-G solvation = -2526.031272 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.80535 -36.60658 -35.57814 -32.49594 -31.72663 -30.27414 -26.77871 -25.99649 -22.95627 -21.52518 -20.43989 -18.71260 -17.15233 -16.42687 -15.75787 -15.23367 -14.86824 -14.19208 -13.64124 -13.24454 -12.90209 -12.66616 -12.50803 -11.85849 -11.64884 -11.22186 -11.14372 -10.86553 -10.73626 -10.61361 -10.33769 -10.27414 -10.18098 -10.09398 -9.63002 -8.83253 -7.57970 -7.17282 -6.17398 -4.62218 3.15048 3.21717 3.25317 4.08226 4.35411 4.58374 4.78114 5.08170 5.19635 5.30408 5.47071 5.53368 5.79599 5.81879 5.86819 5.93019 6.07616 6.11124 6.23549 6.39506 6.52166 6.66651 6.79967 6.98408 7.45347 7.46022 7.84855 8.14168 8.44929 9.03925 9.53035 10.60208 10.79360 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034592 B = 0.009217 C = 0.007661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.233393 B = 3037.210449 C = 3653.800970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.086 3.914 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.572 3.428 10 O -0.573 6.573 11 N -0.641 5.641 12 C 0.118 3.882 13 C -0.135 4.135 14 C -0.130 4.130 15 C 0.150 3.850 16 H 0.058 0.942 17 C -0.128 4.128 18 C 0.081 3.919 19 O -0.574 6.574 20 H 0.268 0.732 21 H 0.046 0.954 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.040 0.960 31 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.518 -10.617 0.346 11.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.576 4.576 8 H 0.087 0.913 9 C 0.378 3.622 10 O -0.455 6.455 11 N -0.380 5.380 12 C -0.006 4.006 13 C -0.174 4.174 14 C -0.168 4.168 15 C 0.045 3.955 16 H 0.076 0.924 17 C -0.167 4.167 18 C 0.003 3.997 19 O -0.378 6.378 20 H 0.079 0.921 21 H 0.064 0.936 22 H 0.087 0.913 23 H 0.089 0.911 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 4.849 -9.788 0.421 10.931 hybrid contribution 0.340 0.181 -0.096 0.397 sum 5.189 -9.607 0.325 10.924 Atomic orbital electron populations 1.70023 1.07037 1.27281 1.35267 1.25730 0.94635 1.00289 0.92668 0.86372 0.80176 0.81412 0.78811 1.19736 1.20432 1.18897 1.20907 0.93583 0.89039 1.54084 0.91302 1.18020 0.86707 0.81189 0.76254 1.90606 1.13830 1.85909 1.55151 1.48777 1.05149 1.04400 1.79716 1.21874 0.84229 0.95296 0.99231 1.22796 0.98042 0.96291 1.00223 1.22738 0.95931 0.97466 1.00652 1.21027 0.93997 0.84893 0.95601 0.92420 1.21893 1.00501 0.96306 0.97995 1.22201 0.93021 0.98064 0.86378 1.86552 1.66279 1.41062 1.43936 0.92093 0.93586 0.91286 0.91116 0.91264 0.91330 0.91189 0.92015 0.89401 0.93919 0.94196 0.78323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.35 11.83 55.55 0.66 -22.69 16 2 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 3 Si 0.91 20.42 29.56 -169.99 -5.02 15.40 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 7 C -0.54 -15.52 8.97 -35.63 -0.32 -15.84 16 8 H 0.07 1.82 6.78 -52.48 -0.36 1.47 16 9 C 0.57 16.71 7.51 -12.99 -0.10 16.61 16 10 O -0.57 -18.88 14.20 5.19 0.07 -18.81 16 11 N -0.64 -15.03 3.07 -164.67 -0.50 -15.54 16 12 C 0.12 2.21 6.42 -2.53 -0.02 2.20 16 13 C -0.14 -1.94 7.09 -24.58 -0.17 -2.12 16 14 C -0.13 -1.88 5.61 -24.89 -0.14 -2.02 16 15 C 0.15 2.95 2.89 -66.95 -0.19 2.75 16 16 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 17 C -0.13 -2.56 5.03 -26.74 -0.13 -2.69 16 18 C 0.08 1.26 6.79 37.16 0.25 1.52 16 19 O -0.57 -9.04 13.66 -35.23 -0.48 -9.52 16 20 H 0.27 7.40 8.29 -40.82 -0.34 7.06 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.07 1.31 7.36 -51.93 -0.38 0.93 16 23 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.07 0.95 7.79 -51.93 -0.40 0.54 16 27 H 0.06 1.23 8.07 -51.93 -0.42 0.81 16 28 H 0.09 2.19 6.93 -51.93 -0.36 1.83 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.51 7.57 -51.93 -0.39 0.12 16 31 H 0.37 3.66 9.12 45.56 0.42 4.07 16 LS Contribution 260.20 15.07 3.92 3.92 Total: -1.00 -35.70 260.20 -5.85 -41.55 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -3.57 Total: 2.92 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -0.92 Total: 2.77 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: 0.15 Total: -38.23 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.41 Total: -28.33 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -35.70 -5.85 -41.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393578281.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.536 kcal (2) G-P(sol) polarization free energy of solvation -35.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds