Wall clock time and date at job start Sun Mar 29 2020 22:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86806 * 119.99901 * 2 1 4 4 H 1.48498 * 109.47042 * 270.00147 * 3 2 1 5 5 H 1.48500 * 109.47192 * 30.00304 * 3 2 1 6 6 H 1.48503 * 109.46937 * 150.00293 * 3 2 1 7 7 C 1.40044 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08009 * 120.00178 * 179.97438 * 7 2 1 9 9 C 1.46372 * 120.00303 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99450 * 359.97438 * 9 7 2 11 11 N 1.34775 * 120.00132 * 180.02562 * 9 7 2 12 12 C 1.47425 * 125.65032 * 354.98119 * 11 9 7 13 13 C 1.54907 * 104.83112 * 204.09712 * 12 11 9 14 14 C 1.55164 * 101.58220 * 322.99086 * 13 12 11 15 15 C 1.47028 * 125.64461 * 174.94363 * 11 9 7 16 16 H 1.08997 * 109.88182 * 59.55783 * 15 11 9 17 17 C 1.52994 * 109.88261 * 298.38836 * 15 11 9 18 18 C 1.52998 * 109.47218 * 176.87509 * 17 15 11 19 19 O 1.42900 * 109.47336 * 185.13465 * 18 17 15 20 20 H 0.97003 * 119.99839 * 359.97438 * 1 2 3 21 21 H 1.08993 * 110.36227 * 85.25828 * 12 11 9 22 22 H 1.09000 * 110.45448 * 322.98042 * 12 11 9 23 23 H 1.08997 * 111.00360 * 204.91919 * 13 12 11 24 24 H 1.09002 * 111.04188 * 81.07590 * 13 12 11 25 25 H 1.08995 * 110.72205 * 153.87145 * 14 13 12 26 26 H 1.09006 * 110.71795 * 277.14212 * 14 13 12 27 27 H 1.09004 * 109.47386 * 296.87540 * 17 15 11 28 28 H 1.09002 * 109.47288 * 56.87469 * 17 15 11 29 29 H 1.09002 * 109.47209 * 305.13140 * 18 17 15 30 30 H 1.09000 * 109.47598 * 65.13161 * 18 17 15 31 31 H 0.96698 * 114.00291 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0465 -1.4001 5 1 1.4382 2.6527 0.7001 6 1 3.5383 1.4402 0.7000 7 6 2.0069 -1.2128 -0.0005 8 1 3.0870 -1.2129 -0.0010 9 6 1.2751 -2.4805 -0.0017 10 8 0.0582 -2.4804 -0.0017 11 7 1.9490 -3.6476 -0.0017 12 6 3.4122 -3.7950 -0.1054 13 6 3.6280 -5.2199 -0.6734 14 6 2.4964 -6.0118 0.0338 15 6 1.3467 -4.9848 0.1026 16 1 0.6559 -5.1457 -0.7251 17 6 0.6073 -5.1200 1.4351 18 6 -0.0807 -6.4850 1.5005 19 8 -0.8683 -6.5650 2.6902 20 1 -0.4850 0.8401 0.0004 21 1 3.8731 -3.7048 0.8781 22 1 3.8229 -3.0491 -0.7860 23 1 4.6083 -5.6070 -0.3955 24 1 3.4971 -5.2339 -1.7555 25 1 2.2042 -6.8789 -0.5585 26 1 2.8045 -6.3134 1.0350 27 1 1.3189 -5.0321 2.2561 28 1 -0.1411 -4.3317 1.5171 29 1 -0.7243 -6.6096 0.6297 30 1 0.6735 -7.2719 1.5105 31 1 -1.3345 -7.4053 2.7975 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393578281.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:17 Heat of formation + Delta-G solvation = -125.127289 kcal Electronic energy + Delta-G solvation = -14605.866086 eV Core-core repulsion = 12078.575478 eV Total energy + Delta-G solvation = -2527.290609 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.47588 -38.08859 -37.39828 -34.67178 -33.26149 -31.91665 -28.56384 -27.74119 -24.53943 -23.05617 -21.95795 -20.46517 -18.68909 -18.09058 -17.70915 -16.92016 -16.25457 -15.95478 -15.27857 -14.83422 -14.48767 -14.29417 -13.96814 -13.60885 -13.26103 -13.00677 -12.88502 -12.62610 -12.48685 -12.08451 -11.95371 -11.86567 -11.62034 -11.53499 -10.95934 -10.87966 -9.83087 -9.08970 -8.31040 -6.87142 1.36586 1.38980 1.54162 2.21484 2.43197 2.81257 3.40553 3.61894 3.75373 3.85652 4.07966 4.24179 4.27898 4.43725 4.51310 4.59967 4.71515 4.94492 4.96708 5.06700 5.10412 5.26493 5.27998 5.33079 5.44494 5.69604 6.05532 6.44479 6.84408 6.93981 7.49588 8.46066 8.66012 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034592 B = 0.009217 C = 0.007661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.233393 B = 3037.210449 C = 3653.800970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.026 3.974 3 Si 0.999 3.001 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.249 1.249 7 C -0.568 4.568 8 H 0.086 0.914 9 C 0.552 3.448 10 O -0.629 6.629 11 N -0.652 5.652 12 C 0.106 3.894 13 C -0.120 4.120 14 C -0.114 4.114 15 C 0.140 3.860 16 H 0.038 0.962 17 C -0.123 4.123 18 C 0.091 3.909 19 O -0.599 6.599 20 H 0.274 0.726 21 H 0.053 0.947 22 H 0.060 0.940 23 H 0.113 0.887 24 H 0.073 0.927 25 H 0.104 0.896 26 H 0.089 0.911 27 H 0.056 0.944 28 H 0.021 0.979 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.157 -12.040 0.237 14.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.189 4.189 3 Si 0.818 3.182 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.172 1.172 7 C -0.604 4.604 8 H 0.104 0.896 9 C 0.358 3.642 10 O -0.516 6.516 11 N -0.389 5.389 12 C -0.017 4.017 13 C -0.158 4.158 14 C -0.151 4.151 15 C 0.035 3.965 16 H 0.056 0.944 17 C -0.162 4.162 18 C 0.013 3.987 19 O -0.408 6.408 20 H 0.084 0.916 21 H 0.071 0.929 22 H 0.078 0.922 23 H 0.131 0.869 24 H 0.091 0.909 25 H 0.123 0.877 26 H 0.107 0.893 27 H 0.075 0.925 28 H 0.040 0.960 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 7.532 -11.289 0.312 13.575 hybrid contribution -0.506 0.544 -0.036 0.744 sum 7.026 -10.745 0.277 12.841 Atomic orbital electron populations 1.70207 1.09590 1.28912 1.36564 1.27044 0.95567 1.05070 0.91226 0.85009 0.78743 0.74910 0.79570 1.18312 1.19734 1.17186 1.21427 0.94568 0.89852 1.54570 0.89606 1.18390 0.86379 0.83355 0.76053 1.90547 1.16136 1.87404 1.57491 1.48627 1.07554 1.04583 1.78106 1.22189 0.81132 0.98514 0.99913 1.22779 1.00064 0.92669 1.00242 1.22731 0.93199 0.96636 1.02574 1.21318 0.95935 0.84701 0.94534 0.94420 1.21780 0.99048 0.97238 0.98149 1.22082 0.93980 0.96104 0.86541 1.86482 1.66875 1.43561 1.43897 0.91604 0.92865 0.92167 0.86912 0.90858 0.87745 0.89293 0.92484 0.95976 0.93526 0.89773 0.75219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.41 11.83 21.83 0.26 -52.15 16 2 C 0.03 1.48 5.50 85.30 0.47 1.95 16 3 Si 1.00 42.34 29.56 68.60 2.03 44.37 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 7 C -0.57 -33.67 8.97 24.83 0.22 -33.45 16 8 H 0.09 4.59 6.78 -2.91 -0.02 4.57 16 9 C 0.55 33.93 7.51 86.36 0.65 34.58 16 10 O -0.63 -44.41 14.20 -4.33 -0.06 -44.47 16 11 N -0.65 -31.28 3.07 -793.11 -2.43 -33.71 16 12 C 0.11 3.82 6.42 86.85 0.56 4.38 16 13 C -0.12 -2.96 7.09 31.99 0.23 -2.73 16 14 C -0.11 -2.85 5.61 31.78 0.18 -2.67 16 15 C 0.14 5.48 2.89 45.34 0.13 5.61 16 16 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 17 C -0.12 -5.04 5.03 30.59 0.15 -4.88 16 18 C 0.09 2.68 6.79 71.98 0.49 3.17 16 19 O -0.60 -18.27 13.66 -148.98 -2.03 -20.30 16 20 H 0.27 15.77 8.29 -92.71 -0.77 15.00 16 21 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 22 H 0.06 2.25 7.36 -2.39 -0.02 2.23 16 23 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.09 1.95 7.79 -2.38 -0.02 1.93 16 27 H 0.06 2.30 8.07 -2.39 -0.02 2.28 16 28 H 0.02 1.16 6.93 -2.39 -0.02 1.15 16 29 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 1.79 7.57 -2.39 -0.02 1.77 16 31 H 0.40 7.03 9.12 -74.06 -0.68 6.35 16 Total: -1.00 -85.09 260.20 1.29 -83.81 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.45 Total: 16.51 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 3.08 Total: 5.96 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -2.17 Total: -85.86 kcal Atomic # 8 Polarization: -62.68 SS G_CDS: -2.10 Total: -64.78 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -85.09 1.29 -83.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393578281.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.321 kcal (2) G-P(sol) polarization free energy of solvation -85.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds