Wall clock time and date at job start Sun Mar 29 2020 21:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86802 * 119.99781 * 2 1 4 4 H 1.48510 * 109.46543 * 269.99770 * 3 2 1 5 5 H 1.48491 * 109.47377 * 29.99605 * 3 2 1 6 6 H 1.48497 * 109.47239 * 149.99827 * 3 2 1 7 7 C 1.40044 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00023 * 179.97438 * 7 2 1 9 9 C 1.46375 * 120.00205 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99774 * 359.72039 * 9 7 2 11 11 N 1.34776 * 120.00160 * 179.97438 * 9 7 2 12 12 C 1.46504 * 119.99794 * 179.72258 * 11 9 7 13 13 C 1.53006 * 109.46797 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.46940 * 183.68550 * 13 12 11 15 15 C 1.52999 * 115.55029 * 295.87454 * 14 13 12 16 16 O 1.42908 * 109.46836 * 300.17774 * 15 14 13 17 17 C 1.53000 * 117.49960 * 150.20203 * 14 13 12 18 18 C 1.53001 * 117.49781 * 81.54296 * 14 13 12 19 19 H 0.97000 * 120.00447 * 359.97438 * 1 2 3 20 20 H 0.96995 * 119.99971 * 359.73213 * 11 9 7 21 21 H 1.09003 * 109.47346 * 300.00257 * 12 11 9 22 22 H 1.08994 * 109.47146 * 60.00604 * 12 11 9 23 23 H 1.09004 * 109.47070 * 303.68406 * 13 12 11 24 24 H 1.08998 * 109.47029 * 63.68626 * 13 12 11 25 25 H 1.08998 * 109.47130 * 60.17578 * 15 14 13 26 26 H 1.09000 * 109.46963 * 180.17993 * 15 14 13 27 27 H 0.96700 * 113.99837 * 180.02562 * 16 15 14 28 28 H 1.08997 * 117.49481 * 359.97438 * 17 14 13 29 29 H 1.08990 * 117.50007 * 145.02129 * 17 14 13 30 30 H 1.09003 * 117.49835 * 214.98387 * 18 14 13 31 31 H 1.08997 * 117.50115 * 359.97438 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4881 2.0464 -1.4002 5 1 1.4381 2.6527 0.6999 6 1 3.5382 1.4403 0.7001 7 6 2.0069 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0052 11 7 1.9491 -3.6476 0.0005 12 6 1.2166 -4.9164 0.0067 13 6 2.2109 -6.0793 0.0060 14 6 1.4479 -7.4027 -0.0803 15 6 0.5414 -7.7206 1.1105 16 8 1.3260 -7.7818 2.3033 17 6 2.1454 -8.5766 -0.7705 18 6 0.9833 -7.8613 -1.4641 19 1 -0.4851 0.8400 0.0004 20 1 2.9190 -3.6476 -0.0034 21 1 0.5936 -4.9720 0.8994 22 1 0.5863 -4.9763 -0.8805 23 1 2.8770 -5.9873 -0.8520 24 1 2.7968 -6.0570 0.9249 25 1 -0.2129 -6.9403 1.2114 26 1 0.0516 -8.6807 0.9481 27 1 0.8154 -7.9804 3.1002 28 1 3.1476 -8.4060 -1.1634 29 1 1.9582 -9.5754 -0.3765 30 1 0.0320 -8.3898 -1.5260 31 1 1.2209 -7.2200 -2.3129 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395887378.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:13 Heat of formation + Delta-G solvation = -77.006255 kcal Electronic energy + Delta-G solvation = -13989.490774 eV Core-core repulsion = 11464.286850 eV Total energy + Delta-G solvation = -2525.203924 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.81740 -37.06646 -35.75113 -33.46305 -32.25970 -29.43262 -26.76511 -25.98099 -22.94384 -22.15000 -19.59838 -18.88402 -17.30065 -16.98936 -15.65389 -15.29226 -15.12889 -14.27342 -13.93506 -13.74074 -13.51276 -12.74217 -12.36344 -12.10963 -11.56929 -11.38796 -11.24185 -11.06966 -10.88243 -10.60552 -10.39381 -10.27899 -10.17095 -9.94533 -9.53215 -8.80670 -7.55219 -7.40525 -6.13605 -4.58788 3.17156 3.23615 3.27455 3.64962 4.14769 4.32637 4.64555 4.66605 4.83268 4.92277 5.20511 5.29370 5.42332 5.63940 5.65439 5.78653 5.89277 5.93357 5.97744 6.05042 6.13230 6.30829 6.71751 6.74407 7.48004 7.65469 8.00509 8.18820 8.39434 9.07384 9.61835 10.65865 10.85029 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.057145 B = 0.005840 C = 0.005767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.866392 B = 4793.145545 C = 4854.151132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.554 3.446 10 O -0.583 6.583 11 N -0.769 5.769 12 C 0.138 3.862 13 C -0.087 4.087 14 C -0.117 4.117 15 C 0.112 3.888 16 O -0.567 6.567 17 C -0.170 4.170 18 C -0.168 4.168 19 H 0.267 0.733 20 H 0.379 0.621 21 H 0.045 0.955 22 H 0.045 0.955 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.056 0.944 26 H 0.042 0.958 27 H 0.377 0.623 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.401 -13.654 0.380 14.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.085 0.915 9 C 0.358 3.642 10 O -0.466 6.466 11 N -0.424 5.424 12 C 0.013 3.987 13 C -0.125 4.125 14 C -0.118 4.118 15 C 0.034 3.966 16 O -0.372 6.372 17 C -0.207 4.207 18 C -0.205 4.205 19 H 0.078 0.922 20 H 0.210 0.790 21 H 0.064 0.936 22 H 0.063 0.937 23 H 0.082 0.918 24 H 0.093 0.907 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.223 0.777 28 H 0.112 0.888 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.782 -13.410 -0.041 13.696 hybrid contribution 0.411 0.608 0.341 0.809 sum 3.194 -12.803 0.300 13.199 Atomic orbital electron populations 1.70026 1.07068 1.27154 1.35640 1.25708 0.94601 1.00264 0.92630 0.86380 0.80160 0.81445 0.78784 1.19773 1.20484 1.18925 1.20906 0.93579 0.89494 1.54375 0.91466 1.18214 0.87204 0.82511 0.76285 1.90587 1.14132 1.86972 1.54899 1.46125 1.08524 1.05079 1.82689 1.20790 0.94003 0.83572 1.00324 1.21246 0.97589 0.91279 1.02384 1.21285 1.02063 0.95980 0.92465 1.21628 0.92031 0.99031 0.83884 1.86490 1.38641 1.94738 1.17353 1.23017 0.97393 0.96409 1.03896 1.23042 0.98804 1.03497 0.95111 0.92183 0.78974 0.93638 0.93656 0.91831 0.90734 0.92534 0.93994 0.77692 0.88761 0.89019 0.88826 0.88128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.65 11.83 55.55 0.66 -22.99 16 2 C 0.09 2.50 5.50 -17.37 -0.10 2.40 16 3 Si 0.91 20.53 29.56 -169.99 -5.02 15.51 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.55 -15.92 9.54 -35.63 -0.34 -16.26 16 8 H 0.07 1.79 7.85 -52.48 -0.41 1.38 16 9 C 0.55 16.42 7.75 -12.99 -0.10 16.32 16 10 O -0.58 -19.54 15.02 5.20 0.08 -19.46 16 11 N -0.77 -18.14 5.55 -61.72 -0.34 -18.49 16 12 C 0.14 2.81 5.42 -4.04 -0.02 2.79 16 13 C -0.09 -1.37 5.10 -26.73 -0.14 -1.51 16 14 C -0.12 -1.58 1.82 -154.51 -0.28 -1.86 16 15 C 0.11 1.41 6.62 37.16 0.25 1.66 16 16 O -0.57 -7.30 13.38 -35.23 -0.47 -7.77 16 17 C -0.17 -1.93 9.94 -26.69 -0.27 -2.19 16 18 C -0.17 -1.97 9.97 -26.69 -0.27 -2.24 16 19 H 0.27 7.42 8.29 -40.82 -0.34 7.08 16 20 H 0.38 7.87 8.45 -40.82 -0.35 7.53 16 21 H 0.05 0.99 7.25 -51.93 -0.38 0.62 16 22 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 23 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 24 H 0.07 1.22 7.98 -51.93 -0.41 0.80 16 25 H 0.06 0.76 7.25 -51.93 -0.38 0.39 16 26 H 0.04 0.44 8.11 -51.93 -0.42 0.02 16 27 H 0.38 3.08 9.12 45.56 0.42 3.50 16 28 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 271.42 15.07 4.09 4.09 Total: -1.00 -36.08 271.42 -5.87 -41.95 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -3.60 Total: 8.05 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -1.26 Total: -0.89 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.31 Total: -41.48 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.39 Total: -27.24 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -36.08 -5.87 -41.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395887378.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.051 kcal (2) G-P(sol) polarization free energy of solvation -36.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds