Wall clock time and date at job start Sun Mar 29 2020 21:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86802 * 119.99781 * 2 1 4 4 H 1.48510 * 109.46543 * 269.99770 * 3 2 1 5 5 H 1.48491 * 109.47377 * 29.99605 * 3 2 1 6 6 H 1.48497 * 109.47239 * 149.99827 * 3 2 1 7 7 C 1.40044 * 120.00185 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00023 * 179.97438 * 7 2 1 9 9 C 1.46375 * 120.00205 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99774 * 359.72039 * 9 7 2 11 11 N 1.34776 * 120.00160 * 179.97438 * 9 7 2 12 12 C 1.46504 * 119.99794 * 179.72258 * 11 9 7 13 13 C 1.53006 * 109.46797 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.46940 * 183.68550 * 13 12 11 15 15 C 1.52999 * 115.55029 * 295.87454 * 14 13 12 16 16 O 1.42908 * 109.46836 * 300.17774 * 15 14 13 17 17 C 1.53000 * 117.49960 * 150.20203 * 14 13 12 18 18 C 1.53001 * 117.49781 * 81.54296 * 14 13 12 19 19 H 0.97000 * 120.00447 * 359.97438 * 1 2 3 20 20 H 0.96995 * 119.99971 * 359.73213 * 11 9 7 21 21 H 1.09003 * 109.47346 * 300.00257 * 12 11 9 22 22 H 1.08994 * 109.47146 * 60.00604 * 12 11 9 23 23 H 1.09004 * 109.47070 * 303.68406 * 13 12 11 24 24 H 1.08998 * 109.47029 * 63.68626 * 13 12 11 25 25 H 1.08998 * 109.47130 * 60.17578 * 15 14 13 26 26 H 1.09000 * 109.46963 * 180.17993 * 15 14 13 27 27 H 0.96700 * 113.99837 * 180.02562 * 16 15 14 28 28 H 1.08997 * 117.49481 * 359.97438 * 17 14 13 29 29 H 1.08990 * 117.50007 * 145.02129 * 17 14 13 30 30 H 1.09003 * 117.49835 * 214.98387 * 18 14 13 31 31 H 1.08997 * 117.50115 * 359.97438 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4881 2.0464 -1.4002 5 1 1.4381 2.6527 0.6999 6 1 3.5382 1.4403 0.7001 7 6 2.0069 -1.2128 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0052 11 7 1.9491 -3.6476 0.0005 12 6 1.2166 -4.9164 0.0067 13 6 2.2109 -6.0793 0.0060 14 6 1.4479 -7.4027 -0.0803 15 6 0.5414 -7.7206 1.1105 16 8 1.3260 -7.7818 2.3033 17 6 2.1454 -8.5766 -0.7705 18 6 0.9833 -7.8613 -1.4641 19 1 -0.4851 0.8400 0.0004 20 1 2.9190 -3.6476 -0.0034 21 1 0.5936 -4.9720 0.8994 22 1 0.5863 -4.9763 -0.8805 23 1 2.8770 -5.9873 -0.8520 24 1 2.7968 -6.0570 0.9249 25 1 -0.2129 -6.9403 1.2114 26 1 0.0516 -8.6807 0.9481 27 1 0.8154 -7.9804 3.1002 28 1 3.1476 -8.4060 -1.1634 29 1 1.9582 -9.5754 -0.3765 30 1 0.0320 -8.3898 -1.5260 31 1 1.2209 -7.2200 -2.3129 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395887378.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:13 Heat of formation + Delta-G solvation = -106.198449 kcal Electronic energy + Delta-G solvation = -13990.756642 eV Core-core repulsion = 11464.286850 eV Total energy + Delta-G solvation = -2526.469793 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.00633 -39.08644 -36.75558 -35.38238 -34.47025 -31.10849 -28.37396 -27.50606 -24.45151 -23.19534 -21.69199 -20.10983 -19.02183 -18.21837 -17.46242 -16.67675 -16.57028 -15.99560 -15.76121 -15.27869 -14.53314 -14.36528 -14.07429 -13.73449 -13.10482 -12.98038 -12.79867 -12.63103 -12.42415 -12.33428 -12.02407 -11.87874 -11.27551 -10.99132 -10.93213 -10.57617 -9.88392 -9.49205 -8.29940 -6.87133 1.40194 1.42230 1.57761 2.24986 2.46190 2.69122 3.13351 3.41836 3.60304 3.76853 3.89828 4.04831 4.19393 4.39200 4.40951 4.58821 4.62522 4.77572 4.82296 5.02275 5.07391 5.22463 5.23441 5.26644 5.31048 5.86735 6.22679 6.26915 6.85471 6.90332 7.54237 8.47936 8.66525 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.057145 B = 0.005840 C = 0.005767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.866392 B = 4793.145545 C = 4854.151132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.027 3.973 3 Si 1.002 2.998 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.249 1.249 7 C -0.575 4.575 8 H 0.088 0.912 9 C 0.534 3.466 10 O -0.634 6.634 11 N -0.758 5.758 12 C 0.144 3.856 13 C -0.071 4.071 14 C -0.146 4.146 15 C 0.113 3.887 16 O -0.585 6.585 17 C -0.149 4.149 18 C -0.166 4.166 19 H 0.275 0.725 20 H 0.395 0.605 21 H 0.025 0.975 22 H 0.030 0.970 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.036 0.964 26 H 0.069 0.931 27 H 0.395 0.605 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.166 -13.997 0.155 14.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.188 4.188 3 Si 0.821 3.179 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.172 1.172 7 C -0.612 4.612 8 H 0.106 0.894 9 C 0.339 3.661 10 O -0.522 6.522 11 N -0.412 5.412 12 C 0.019 3.981 13 C -0.109 4.109 14 C -0.147 4.147 15 C 0.035 3.965 16 O -0.393 6.393 17 C -0.186 4.186 18 C -0.203 4.203 19 H 0.085 0.915 20 H 0.228 0.772 21 H 0.043 0.957 22 H 0.049 0.951 23 H 0.094 0.906 24 H 0.088 0.912 25 H 0.054 0.946 26 H 0.087 0.913 27 H 0.244 0.756 28 H 0.119 0.881 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.590 -13.812 -0.255 14.557 hybrid contribution -0.158 0.640 0.425 0.785 sum 4.432 -13.172 0.171 13.898 Atomic orbital electron populations 1.70194 1.09639 1.29014 1.36474 1.27029 0.95557 1.05092 0.91103 0.84969 0.78703 0.74783 0.79491 1.18467 1.19690 1.17204 1.21461 0.94790 0.90105 1.54813 0.89369 1.18678 0.86891 0.84476 0.76104 1.90538 1.16253 1.88076 1.57352 1.45856 1.09330 1.04941 1.81075 1.20842 0.94782 0.83885 0.98566 1.21063 0.96529 0.90644 1.02618 1.21322 1.03651 0.95752 0.93932 1.21617 0.91465 0.99702 0.83704 1.86435 1.39678 1.94873 1.18350 1.23094 0.97470 0.96072 1.01985 1.23123 1.00007 1.03370 0.93751 0.91509 0.77184 0.95685 0.95146 0.90618 0.91209 0.94558 0.91306 0.75606 0.88071 0.87321 0.87304 0.88687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.68 11.83 21.83 0.26 -51.42 16 2 C 0.03 1.54 5.50 85.30 0.47 2.01 16 3 Si 1.00 41.65 29.56 68.60 2.03 43.68 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 6 H -0.25 -9.60 7.11 99.48 0.71 -8.90 16 7 C -0.58 -33.69 9.54 24.83 0.24 -33.45 16 8 H 0.09 4.61 7.85 -2.91 -0.02 4.59 16 9 C 0.53 32.52 7.75 86.36 0.67 33.19 16 10 O -0.63 -44.36 15.02 -4.31 -0.06 -44.43 16 11 N -0.76 -36.33 5.55 -467.39 -2.59 -38.92 16 12 C 0.14 6.01 5.42 86.38 0.47 6.47 16 13 C -0.07 -2.18 5.10 30.60 0.16 -2.03 16 14 C -0.15 -3.73 1.82 -52.18 -0.09 -3.83 16 15 C 0.11 2.73 6.62 71.98 0.48 3.21 16 16 O -0.59 -14.44 13.38 -148.98 -1.99 -16.43 16 17 C -0.15 -2.96 9.94 30.62 0.30 -2.66 16 18 C -0.17 -3.59 9.97 30.62 0.31 -3.28 16 19 H 0.28 15.54 8.29 -92.71 -0.77 14.77 16 20 H 0.39 16.28 8.45 -92.71 -0.78 15.50 16 21 H 0.02 1.14 7.25 -2.39 -0.02 1.12 16 22 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.08 2.13 8.10 -2.38 -0.02 2.11 16 24 H 0.07 2.22 7.98 -2.39 -0.02 2.20 16 25 H 0.04 1.00 7.25 -2.39 -0.02 0.98 16 26 H 0.07 1.28 8.11 -2.39 -0.02 1.27 16 27 H 0.39 6.06 9.12 -74.06 -0.68 5.39 16 28 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -79.75 271.42 0.30 -79.45 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: -0.32 Total: 28.44 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 2.99 Total: -0.36 kcal Atomic # 7 Polarization: -88.01 SS G_CDS: -2.34 Total: -90.34 kcal Atomic # 8 Polarization: -58.80 SS G_CDS: -2.06 Total: -60.86 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -79.75 0.30 -79.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395887378.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.751 kcal (2) G-P(sol) polarization free energy of solvation -79.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds